Needleman-Wunsch algorithm
Smith-Waterman algorithm
Multiple sequence alignment
Protein Folding(thermodyinamic hypothesis)
HP models and folding funnels
Monte Carlo simulations
Boltzman sampling
Dihedral Angle
Molecular Dynamics Simulations
PDB format
Force-field parameters
Acive site vs binding site
Lock and key model for enzyme
Hydrophilic and hydrophobic forces
Protein architechture:
Primary-, Secondary, Teritary and Quatinary structures of proteins
Ramachandran Plot
Rotamer Library
Threading
Homology model
Intellingent Design vis-a-vis Bioinformatics
Post translational modifications
Knowledge-Based Potential