#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	NA20898	NA20852	NA20893	NA20895	NA21125	NA20890	NA21114	NA20908	NA21123	NA21097	NA20876	NA21088	NA20894	NA20847	NA20859	NA21093	NA21103	NA20861	NA21086	NA20881	NA20892	NA20899	NA20911	NA20874	NA20854	NA20867	NA20888	NA20886	NA20849	NA21090	NA20850	NA20883	NA21089	NA20853	NA20866	NA20878	NA20846	NA20877	NA21087	NA20851	NA21101	NA20872	NA20856	NA20906	NA20897	NA20901	NA20910	NA20905	NA21100	NA20845	NA20903	NA20887	NA20904	NA21120	NA20868	NA21098	NA20862	NA20870	NA21102	NA20873	NA20871	NA20869	NA21137	NA21099	NA21091	NA20885	NA20884	NA20891	NA20889	NA21095	NA21122	NA20858	NA21121	NA21092	NA20875	NA20896	NA20902	NA20882
1	15019	var_215128	C,T	G	.	MAPQ,PF_FAIL_REPEAT;MISMAPPED_UNPLACEABLE	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	0/0:0,0:0.00:2.59	0/0:0,0:0.00:2.59	0/0:0,0:0.00:2.59	0/0:0,0:0.00:2.59	0/0:0,0:0.00:2.59	0/0:0,0:0.00:2.59	0/0:0,0:0.00:2.59	1/1:0,1:0.70:2.59	0/0:0,0:0.00:2.59	0/0:0,0:0.00:2.59	0/1:1,1:3.88:2.59	0/0:0,0:0.00:2.59	0/0:0,0:0.00:2.59	1/1:0,1:0.69:2.59	0/0:0,0:0.00:2.59	0/0:0,0:0.00:2.59	0/0:0,0:0.00:2.59	0/0:0,0:0.00:2.59	0/0:0,0:0.00:2.59	0/0:0,0:0.00:2.59	0/0:0,0:0.00:2.59	0/0:0,0:0.00:2.59	0/0:0,0:0.00:2.59	0/0:0,0:0.00:2.59	0/0:0,0:0.00:2.59	0/0:0,0:0.00:2.59	0/0:0,0:0.00:2.59	0/0:0,0:0.00:2.59	0/0:0,0:0.00:2.59	0/0:0,0:0.00:2.59	0/0:1,0:0.00:2.59	1/1:0,1:0.69:2.59	0/0:0,0:0.00:2.59	0/0:0,0:0.00:2.59	0/0:0,0:0.00:2.59	0/0:0,0:0.00:2.59	0/0:0,0:0.00:2.59	0/0:0,0:0.00:2.59	0/0:0,0:0.00:2.59	0/0:0,0:0.00:2.59	0/0:0,0:0.00:2.59	0/0:0,0:0.00:2.59	0/0:1,0:0.69:2.59	0/0:0,0:0.00:2.59	0/0:0,0:0.00:2.59	0/1:1,1:3.79:2.59	0/0:0,0:0.00:2.59	0/0:0,0:0.00:2.59	0/0:0,0:0.00:2.59	0/0:0,0:0.00:2.59	0/0:1,0:0.70:2.59	1/1:0,1:0.70:2.59	0/0:0,0:0.00:2.59	0/0:0,0:0.00:2.59	0/0:0,0:0.00:2.59	0/0:0,0:0.00:2.59	0/0:0,0:0.00:2.59	0/0:0,0:0.00:2.59	0/0:0,0:0.00:2.59	0/0:1,0:0.69:2.59	0/0:0,0:0.00:2.59	0/0:1,0:0.69:2.59	0/0:0,0:0.00:2.59	0/0:0,0:0.00:2.59	0/0:0,0:0.00:2.59	0/0:1,0:0.69:2.59	1/1:0,1:0.70:2.59	0/0:0,0:0.00:2.59	0/0:0,0:0.00:2.59	0/0:0,0:0.00:2.59	0/0:0,0:0.00:2.59	0/0:0,0:0.00:2.59	0/0:0,0:0.00:2.59	0/0:0,0:0.00:2.59	0/0:0,0:0.00:2.59	0/0:0,0:0.00:2.59	0/0:0,0:0.00:2.59	0/0:1,0:0.69:2.59
1	15484	var_5175455	T	A,T	.	MAPQ;MISMAPPED_UNPLACEABLE	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	0/0:0,0:0.00:9.76	0/0:0,0:0.00:9.76	0/0:0,0:0.00:9.76	0/0:0,0:0.00:9.76	0/0:0,0:0.00:9.76	0/0:0,0:0.00:9.76	0/0:0,0:0.00:9.76	0/0:0,0:0.00:9.76	0/0:1,0:0.70:9.76	0/0:0,0:0.00:9.76	0/0:0,0:0.00:9.76	0/0:0,0:0.00:9.76	0/0:0,0:0.00:9.76	0/0:0,0:0.00:9.76	0/0:0,0:0.00:9.76	0/0:0,0:0.00:9.76	0/0:0,0:0.00:9.76	0/0:0,0:0.00:9.76	0/0:0,0:0.00:9.76	0/0:6,0:4.16:9.76	0/0:0,0:0.00:9.76	0/0:0,0:0.00:9.76	0/0:0,0:0.00:9.76	0/0:0,0:0.00:9.76	0/0:0,0:0.00:9.76	0/0:0,0:0.00:9.76	0/0:0,0:0.00:9.76	0/0:0,0:0.00:9.76	0/0:0,0:0.00:9.76	1/1:0,5:3.47:9.76	0/0:0,0:0.00:9.76	0/0:0,0:0.00:9.76	0/0:0,0:0.00:9.76	0/0:0,0:0.00:9.76	0/0:0,0:0.00:9.76	0/0:0,0:0.00:9.76	0/0:0,0:0.00:9.76	0/0:0,0:0.00:9.76	1/1:0,1:0.69:9.76	0/0:0,0:0.00:9.76	0/0:0,0:0.00:9.76	1/1:0,6:4.16:9.76	0/0:0,0:0.00:9.76	0/0:0,0:0.00:9.76	0/0:0,0:0.00:9.76	0/0:0,0:0.00:9.76	0/0:0,0:0.00:9.76	0/0:0,0:0.00:9.76	0/0:0,0:0.00:9.76	0/0:0,0:0.00:9.76	1/1:0,3:2.08:9.76	0/0:0,0:0.00:9.76	0/0:0,0:0.00:9.76	0/0:0,0:0.00:9.76	0/0:0,0:0.00:9.76	0/0:0,0:0.00:9.76	0/0:0,0:0.00:9.76	0/0:1,0:0.69:9.76	0/0:0,0:0.00:9.76	0/0:0,0:0.00:9.76	0/0:0,0:0.00:9.76	0/0:0,0:0.00:9.76	1/1:0,1:0.70:9.76	0/0:0,0:0.00:9.76	0/0:0,0:0.00:9.76	0/0:0,0:0.00:9.76	0/0:0,0:0.00:9.76	0/0:0,0:0.00:9.76	0/0:0,0:0.00:9.76	0/0:0,0:0.00:9.76	0/0:0,0:0.00:9.76	0/0:0,0:0.00:9.76	0/0:0,0:0.00:9.76	1/1:0,10:6.93:9.76	1/1:0,1:0.69:9.76	0/0:0,0:0.00:9.76	0/0:0,0:0.00:9.76	0/0:0,0:0.00:9.76
1	19239	var_3420694	C	G,TT,G	.	MAPQ,PF_FAIL_ERROR	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	0/0:5,0:3.46:6.74	0/0:8,0:5.55:6.74	0/0:9,0:6.23:6.74	0/0:4,0:2.77:6.74	0/0:14,0:9.71:6.74	0/0:7,0:4.85:6.74	0/0:6,0:4.16:6.74	0/0:6,0:4.16:6.74	0/0:5,0:3.47:6.74	0/0:3,0:2.08:6.74	0/0:8,0:5.55:6.74	0/0:6,0:4.16:6.74	0/0:7,0:4.85:6.74	0/0:2,0:1.39:6.74	0/0:1,0:0.69:6.74	0/0:12,0:8.31:6.74	0/0:10,0:6.93:6.74	0/0:3,0:2.07:6.74	0/0:9,0:6.24:6.74	0/0:6,0:4.16:6.74	0/0:13,0:9.01:6.74	0/0:5,0:3.47:6.74	0/0:22,0:15.25:6.74	0/0:1,0:0.69:6.74	0/0:10,0:6.93:6.74	0/0:2,0:1.39:6.74	0/0:2,0:1.38:6.74	0/0:12,0:8.32:6.74	0/0:9,0:6.24:6.74	0/0:12,0:8.31:6.74	0/0:6,0:4.16:6.74	0/0:24,0:16.63:6.74	0/0:11,0:7.62:6.74	1/1:0,0:0.00:6.74	0/0:18,0:12.48:6.74	0/0:3,0:2.08:6.74	1/1:0,0:0.00:6.74	0/0:2,0:1.39:6.74	0/0:13,0:9.01:6.74	0/0:1,0:0.69:6.74	0/0:17,0:11.78:6.74	0/0:3,0:2.08:6.74	0/0:8,0:5.54:6.74	0/0:2,0:1.38:6.74	0/0:10,0:6.93:6.74	0/0:3,0:2.08:6.74	0/0:8,0:5.55:6.74	0/0:1,0:0.70:6.74	0/0:15,0:10.39:6.74	0/0:6,0:4.16:6.74	0/0:5,0:3.46:6.74	0/0:6,0:4.16:6.74	0/0:8,0:5.55:6.74	0/0:3,0:2.08:6.74	0/0:11,0:7.63:6.74	0/0:11,0:7.62:6.74	0/0:12,0:8.32:6.74	0/0:17,0:11.79:6.74	0/0:1,0:0.69:6.74	0/0:10,0:6.94:6.74	0/0:16,0:11.09:6.74	0/0:4,0:2.77:6.74	0/0:4,0:2.77:6.74	0/0:5,0:3.47:6.74	0/0:5,0:3.47:6.74	0/0:11,0:7.62:6.74	0/0:1,0:0.70:6.74	0/0:4,0:2.77:6.74	0/0:6,0:4.16:6.74	0/0:2,0:1.39:6.74	0/0:3,0:2.08:6.74	0/0:2,0:1.39:6.74	0/0:3,0:2.08:6.74	0/0:11,0:7.63:6.74	0/0:7,0:4.85:6.74	0/0:6,0:4.15:6.74	0/0:6,0:4.16:6.74	0/0:4,0:2.77:6.74
1	24341	var_5744488	A	T,X	.	MAPQ;MISMAPPED_UNPLACEABLE	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	0/0:5,0:3.46:22.08	0/0:0,0:0.00:22.08	0/0:0,0:0.00:22.08	0/0:0,0:0.00:22.08	0/0:0,0:0.00:22.08	0/0:7,1:4.85:22.08	0/0:2,0:1.39:22.08	0/0:1,0:0.70:22.08	1/1:0,1:0.70:22.08	0/0:0,0:0.00:22.08	0/0:0,0:0.00:22.08	0/0:0,0:0.00:22.08	0/0:0,0:0.00:22.08	0/0:1,0:0.69:22.08	0/0:0,0:0.00:22.08	0/0:6,0:4.86:22.08	0/0:0,0:0.00:22.08	0/0:2,0:1.39:22.08	0/0:0,0:0.00:22.08	0/0:3,0:2.08:22.08	0/1:1,2:3.21:22.08	0/0:1,0:0.69:22.08	0/0:0,0:0.00:22.08	0/0:7,0:4.85:22.08	0/0:0,0:0.00:22.08	0/0:1,0:0.69:22.08	0/0:0,0:0.00:22.08	0/0:13,0:9.01:22.08	0/0:2,0:1.39:22.08	0/0:4,0:2.08:22.08	0/0:5,0:3.46:22.08	0/0:0,0:0.00:22.08	0/0:0,0:0.00:22.08	0/0:0,0:0.00:22.08	0/0:19,0:13.17:22.08	0/0:3,0:2.08:22.08	0/0:1,0:0.70:22.08	0/0:0,0:0.00:22.08	1/1:0,1:0.69:22.08	0/0:0,0:0.00:22.08	1/1:0,4:2.77:22.08	0/0:1,0:0.69:22.08	0/0:0,0:0.00:22.08	0/0:0,0:0.00:22.08	0/0:0,0:0.00:22.08	0/0:7,0:4.86:22.08	0/0:3,0:2.08:22.08	0/0:0,0:0.00:22.08	0/0:4,0:2.77:22.08	0/0:6,0:4.16:22.08	0/0:0,0:0.00:22.08	0/0:0,0:0.00:22.08	0/0:0,0:0.00:22.08	0/0:1,0:0.69:22.08	0/0:0,0:0.00:22.08	0/1:3,2:6.28:22.08	0/0:4,0:2.77:22.08	0/0:0,0:0.00:22.08	0/0:0,0:0.00:22.08	0/0:0,0:0.00:22.08	0/1:4,6:11.33:22.08	0/0:0,0:0.00:22.08	1/1:0,1:0.70:22.08	0/0:7,0:4.85:22.08	0/0:6,0:4.16:22.08	0/0:6,0:4.16:22.08	0/0:2,0:1.39:22.08	0/0:0,0:0.00:22.08	0/0:0,0:0.00:22.08	0/0:0,0:0.00:22.08	0/0:0,0:0.00:22.08	0/0:3,0:2.08:22.08	0/0:0,0:0.00:22.08	0/0:4,0:2.77:22.08	0/0:0,0:0.00:22.08	0/0:0,0:0.00:22.08	0/0:7,0:4.86:22.08	0/0:0,0:0.00:22.08
1	28290	var_5060913	A	T	.	MAPQ;MISMAPPED_UNPLACEABLE	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	1/1:0,4:2.77:7.46	0/0:0,0:0.00:7.46	0/0:0,0:0.00:7.46	1/1:0,1:0.69:7.46	0/0:0,0:0.00:7.46	1/1:0,2:1.39:7.46	1/1:0,6:4.16:7.46	1/1:0,6:3.46:7.46	1/1:0,3:2.08:7.46	1/1:0,1:0.69:7.46	1/1:0,5:4.85:7.46	0/0:0,0:0.00:7.46	0/0:0,0:0.00:7.46	0/0:0,0:0.00:7.46	1/1:0,3:2.08:7.46	1/1:0,2:1.39:7.46	1/1:0,3:2.08:7.46	1/1:0,2:1.39:7.46	0/0:0,0:0.00:7.46	1/1:0,5:3.46:7.46	1/1:0,3:2.08:7.46	1/1:0,3:2.08:7.46	1/1:0,7:4.85:7.46	1/1:0,5:3.47:7.46	0/1:3,4:10.43:7.46	0/0:0,0:0.00:7.46	1/1:0,4:2.77:7.46	0/0:0,0:0.00:7.46	1/1:0,3:2.08:7.46	0/0:0,0:0.00:7.46	1/1:0,3:2.08:7.46	1/1:0,4:2.77:7.46	0/0:0,0:0.00:7.46	1/1:0,5:3.46:7.46	1/1:0,13:7.63:7.46	1/1:0,3:2.08:7.46	1/1:0,2:1.39:7.46	1/1:0,3:2.08:7.46	1/1:1,9:1.35:7.46	0/0:1,0:0.69:7.46	1/1:0,6:4.16:7.46	0/1:2,2:5.98:7.46	1/1:0,2:1.39:7.46	0/0:0,0:0.00:7.46	0/0:0,0:0.00:7.46	0/0:0,0:0.00:7.46	1/1:0,2:1.38:7.46	0/0:0,0:0.00:7.46	1/1:0,10:6.93:7.46	1/1:0,5:3.47:7.46	1/1:0,4:2.77:7.46	1/1:0,4:2.77:7.46	0/0:0,0:0.00:7.46	1/1:0,3:1.38:7.46	0/0:0,0:0.00:7.46	1/1:0,5:3.46:7.46	0/0:0,0:0.00:7.46	0/0:0,0:0.00:7.46	1/1:0,2:1.39:7.46	1/1:0,5:3.46:7.46	1/1:0,2:1.38:7.46	1/1:0,4:2.77:7.46	1/1:0,3:2.08:7.46	0/1:2,1:3.16:7.46	1/1:0,2:1.39:7.46	1/1:0,6:4.16:7.46	1/1:0,2:1.39:7.46	0/0:0,0:0.00:7.46	1/1:0,3:2.08:7.46	0/0:0,0:0.00:7.46	1/1:0,6:4.16:7.46	1/1:0,1:0.69:7.46	1/1:0,3:2.08:7.46	1/1:0,3:2.08:7.46	0/0:0,0:0.00:7.46	1/1:0,8:4.85:7.46	1/1:0,4:2.77:7.46	1/1:0,8:5.54:7.46
1	41100	var_56310	G	A	.	MAPQ	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	0/0:12,0:8.32:9.92	0/0:20,0:11.79:9.92	0/0:17,0:11.79:9.92	0/0:12,0:8.32:9.92	0/0:23,0:15.94:9.92	0/0:16,0:11.09:9.92	0/0:24,1:11.39:9.92	0/0:27,0:18.02:9.92	0/0:10,0:9.01:9.92	0/0:13,0:8.32:9.92	0/0:24,0:16.64:9.92	0/0:7,0:4.86:9.92	0/0:33,0:24.27:9.92	0/0:19,0:12.48:9.92	0/0:35,0:22.87:9.92	0/0:35,0:24.96:9.92	0/0:25,0:16.64:9.92	0/1:10,2:0.59:9.92	0/0:18,0:13.17:9.92	0/0:21,0:13.17:9.92	0/0:29,0:20.10:9.92	0/0:19,0:12.48:9.92	0/0:47,0:33.27:9.92	0/0:30,0:20.10:9.92	0/1:25,9:16.25:9.92	0/0:15,0:10.39:9.92	0/0:17,0:12.48:9.92	0/0:19,0:12.47:9.92	0/0:24,0:16.63:9.92	0/0:32,0:20.10:9.92	0/0:30,0:20.10:9.92	0/0:60,0:42.97:9.92	0/0:22,0:15.24:9.92	0/0:17,0:11.09:9.92	0/0:49,0:33.97:9.92	0/0:34,0:23.57:9.92	0/0:14,0:11.09:9.92	0/0:16,0:10.40:9.92	0/0:46,0:29.80:9.92	0/0:8,0:6.24:9.92	0/0:24,0:15.94:9.92	0/0:18,0:11.78:9.92	0/0:29,2:11.18:9.92	0/0:8,0:5.54:9.92	0/0:30,0:18.71:9.92	0/0:20,0:14.56:9.92	0/0:25,0:15.94:9.92	0/0:11,0:6.93:9.92	0/0:12,0:9.01:9.92	0/0:23,0:15.25:9.92	0/0:21,0:13.86:9.92	0/0:14,0:9.70:9.92	0/0:21,0:13.87:9.92	0/0:16,0:13.17:9.92	0/0:26,0:18.02:9.92	0/0:34,0:21.48:9.92	0/0:35,0:25.65:9.92	0/0:18,0:11.79:9.92	0/0:14,0:10.39:9.92	0/0:35,0:23.56:9.92	0/0:39,0:27.72:9.92	0/0:22,0:15.25:9.92	0/0:19,0:13.86:9.92	0/0:27,0:18.72:9.92	0/0:18,0:10.40:9.92	0/0:44,0:31.19:9.92	0/0:19,0:14.55:9.92	0/0:14,0:9.01:9.92	0/0:19,0:13.17:9.92	0/0:12,0:9.01:9.92	0/0:26,0:15.94:9.92	0/0:12,0:8.32:9.92	0/0:22,0:14.56:9.92	0/0:28,0:21.49:9.92	0/0:17,0:11.78:9.92	0/0:23,0:15.25:9.92	0/0:25,0:15.94:9.92	0/0:16,0:11.09:9.92
1	42011	var_5711804	G	A,T	.	MAPQ	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	0/0:16,0:11.79:13.33	0/0:21,0:14.56:13.33	0/0:27,0:17.33:13.33	0/0:5,0:3.47:13.33	0/0:20,0:13.87:13.33	0/0:19,0:13.17:13.33	0/0:24,2:8.21:13.33	0/0:34,0:22.18:13.33	0/0:19,0:13.17:13.33	0/0:11,0:7.62:13.33	0/0:22,3:3.34:13.33	0/0:8,0:6.24:13.33	0/0:23,0:15.25:13.33	0/0:15,0:9.71:13.33	0/0:26,0:16.63:13.33	0/0:23,0:15.25:13.33	0/0:18,0:13.17:13.33	0/0:13,0:9.02:13.33	0/0:24,3:4.81:13.33	0/1:14,5:9.22:13.33	0/0:17,0:12.48:13.33	0/0:22,0:15.25:13.33	0/0:41,0:28.42:13.33	0/0:19,0:13.17:13.33	0/0:17,0:11.09:13.33	0/0:13,0:8.31:13.33	0/0:9,0:6.23:13.33	0/0:17,0:13.86:13.33	0/0:22,0:16.63:13.33	0/0:23,0:14.56:13.33	0/0:20,0:13.86:13.33	0/0:64,0:42.28:13.33	0/0:23,0:16.64:13.33	0/0:24,0:15.94:13.33	0/0:46,0:32.58:13.33	0/0:24,0:18.71:13.33	0/0:13,0:8.32:13.33	0/0:13,0:9.01:13.33	0/0:44,0:29.11:13.33	0/0:10,0:6.93:13.33	0/0:22,0:13.86:13.33	0/0:15,0:10.40:13.33	0/0:27,0:18.71:13.33	0/0:4,0:2.77:13.33	0/0:19,0:13.87:13.33	0/0:25,0:17.33:13.33	0/0:16,0:11.09:13.33	0/0:10,0:6.93:13.33	0/0:10,0:6.93:13.33	0/0:13,0:9.01:13.33	0/0:14,0:10.39:13.33	0/0:20,0:13.17:13.33	0/0:23,0:17.32:13.33	0/1:11,5:10.08:13.33	0/0:26,0:17.32:13.33	0/0:26,0:19.40:13.33	0/0:25,0:18.02:13.33	0/0:23,0:15.25:13.33	0/0:18,0:11.09:13.33	0/0:38,0:27.73:13.33	0/0:36,0:23.57:13.33	0/0:14,2:3.53:13.33	0/1:9,4:7.20:13.33	0/0:21,0:14.55:13.33	0/0:17,0:11.78:13.33	0/0:34,0:26.34:13.33	0/0:19,0:11.78:13.33	0/0:10,0:8.31:13.33	0/0:9,0:6.24:13.33	0/0:12,1:4.73:13.33	0/0:31,0:20.80:13.33	0/0:7,0:4.86:13.33	0/0:15,0:11.09:13.33	0/0:40,0:27.72:13.33	0/0:22,0:14.55:13.33	0/0:30,0:22.18:13.33	0/0:20,0:13.17:13.33	0/0:17,0:11.79:13.33
1	46137	var_5831731	G	A,G,C,T	.	MAPQ,PF_FAIL_REPEAT	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	0/1:8,4:9.97:5.57	0/0:12,0:8.32:5.57	0/1:5,1:1.38:5.57	0/0:5,0:3.47:5.57	0/0:8,0:5.55:5.57	0/0:7,0:4.85:5.57	0/0:14,0:11.09:5.57	0/0:16,1:6.40:5.57	0/0:19,0:13.17:5.57	0/1:11,2:0.29:5.57	0/0:14,0:9.70:5.57	0/0:6,0:4.16:5.57	0/0:8,0:7.63:5.57	0/0:14,0:9.71:5.57	0/0:18,0:11.09:5.57	0/0:18,0:12.47:5.57	0/0:5,0:4.16:5.57	0/0:14,0:9.02:5.57	0/0:7,0:4.85:5.57	0/1:7,3:6.19:5.57	0/1:7,4:10.36:5.57	0/0:6,0:4.15:5.57	0/1:23,4:2.00:5.57	0/0:27,0:20.10:5.57	0/1:10,4:9.89:5.57	0/1:13,6:9.41:5.57	0/0:9,0:6.23:5.57	0/0:12,0:8.32:5.57	0/0:17,0:11.79:5.57	0/0:8,0:5.54:5.57	0/0:9,0:5.55:5.57	0/0:56,0:38.82:5.57	0/1:10,2:1.82:5.57	0/1:24,8:10.30:5.57	0/0:60,0:42.98:5.57	0/1:10,2:1.72:5.57	0/1:10,3:4.02:5.57	0/1:9,4:7.69:5.57	0/0:16,0:10.40:5.57	0/0:9,1:2.10:5.57	0/1:8,3:7.02:5.57	0/0:7,0:4.85:5.57	0/0:10,0:7.63:5.57	1/1:0,0:0.00:5.57	0/0:17,0:12.47:5.57	0/1:19,4:1.58:5.57	0/0:9,1:1.85:5.57	0/0:6,0:4.16:5.57	0/0:8,0:4.85:5.57	0/0:19,0:13.17:5.57	0/0:10,1:2.43:5.57	0/1:4,2:5.66:5.57	0/0:4,0:2.77:5.57	0/0:10,1:2.43:5.57	0/1:16,6:12.03:5.57	0/0:12,1:4.83:5.57	0/0:14,0:9.71:5.57	0/0:14,0:9.71:5.57	0/0:11,0:7.63:5.57	0/0:12,0:7.62:5.57	0/1:15,3:2.33:5.57	0/1:8,2:2.02:5.57	0/0:12,0:8.32:5.57	0/1:3,1:2.46:5.57	0/0:12,0:8.32:5.57	0/0:12,0:8.31:5.57	0/0:17,0:12.47:5.57	0/0:8,2:0.75:5.57	0/0:16,0:10.40:5.57	0/0:6,0:4.16:5.57	0/1:10,2:0.86:5.57	0/0:12,0:8.32:5.57	0/0:22,0:15.25:5.57	0/0:7,0:4.86:5.57	0/0:14,2:2.41:5.57	0/0:16,0:10.39:5.57	0/0:35,0:23.57:5.57	0/1:6,1:0.15:5.57
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1	46751	var_5851911	T	G	.	MAPQ,PF_FAIL_REPEAT	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	0/0:18,0:13.87:2.93	0/0:17,0:12.48:2.93	0/0:31,0:22.18:2.93	0/0:15,0:9.01:2.93	0/0:27,0:19.40:2.93	0/0:15,0:10.40:2.93	0/0:19,0:13.17:2.93	0/0:32,0:20.10:2.93	0/0:20,0:14.55:2.93	0/0:12,0:8.32:2.93	0/0:28,1:14.84:2.93	0/0:5,0:3.46:2.93	0/0:33,0:22.88:2.93	0/0:21,0:13.17:2.93	0/0:23,0:15.25:2.93	0/0:31,0:20.80:2.93	0/0:16,0:10.40:2.93	0/0:15,0:9.71:2.93	0/0:21,0:14.56:2.93	0/0:31,0:20.79:2.93	0/0:22,0:15.25:2.93	0/0:19,0:13.17:2.93	0/0:53,0:38.82:2.93	0/0:21,0:14.56:2.93	0/0:28,0:18.71:2.93	0/0:26,0:18.03:2.93	0/0:19,0:12.48:2.93	0/0:26,0:18.02:2.93	0/0:21,0:13.86:2.93	0/0:33,0:23.57:2.93	0/0:26,0:19.41:2.93	0/0:50,0:33.97:2.93	0/0:24,0:19.41:2.93	0/0:18,0:11.78:2.93	0/0:55,1:31.26:2.93	0/0:28,0:20.10:2.93	0/0:16,0:10.40:2.93	0/0:13,1:6.12:2.93	0/0:42,0:28.42:2.93	0/0:16,0:11.09:2.93	0/0:35,0:24.95:2.93	0/0:24,0:16.63:2.93	0/0:30,0:22.87:2.93	0/0:9,0:6.93:2.93	0/0:14,0:9.70:2.93	0/0:20,0:12.47:2.93	0/0:20,0:13.86:2.93	0/0:11,1:3.40:2.93	0/0:29,0:19.41:2.93	0/0:19,0:13.87:2.93	0/0:18,0:11.78:2.93	0/0:17,0:11.09:2.93	0/0:13,0:9.01:2.93	0/0:13,0:8.32:2.93	0/0:34,0:24.26:2.93	0/0:32,1:18.69:2.93	0/0:35,0:25.65:2.93	0/0:40,0:27.03:2.93	0/0:26,0:17.33:2.93	0/0:25,0:17.33:2.93	0/0:31,0:21.49:2.93	0/0:14,0:10.40:2.93	0/0:23,0:15.94:2.93	0/0:27,0:19.40:2.93	0/0:16,0:12.48:2.93	0/0:38,0:26.34:2.93	0/0:34,1:20.44:2.93	0/0:12,1:4.22:2.93	0/0:11,0:7.62:2.93	0/0:19,0:13.17:2.93	0/0:23,0:15.25:2.93	0/0:8,0:5.55:2.93	0/0:20,0:13.86:2.93	0/0:38,0:25.64:2.93	0/0:20,0:13.86:2.93	0/0:20,0:14.56:2.93	0/0:30,0:21.48:2.93	0/0:7,0:4.85:2.93
1	47159	var_2177170	T	C	.	MAPQ,PF_FAIL_REPEAT	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	0/0:18,0:12.48:3.92	0/0:16,2:1.19:3.92	0/0:24,0:17.33:3.92	0/0:12,0:8.32:3.92	0/0:24,0:15.94:3.92	0/0:20,0:13.17:3.92	0/0:25,0:16.63:3.92	0/0:33,0:21.49:3.92	0/0:10,0:6.93:3.92	0/0:15,0:10.40:3.92	0/0:18,0:13.17:3.92	0/0:13,0:9.01:3.92	0/0:30,0:20.80:3.92	0/0:16,0:11.09:3.92	0/0:27,0:20.10:3.92	0/0:47,0:31.19:3.92	0/0:18,0:12.47:3.92	0/0:15,0:10.39:3.92	0/0:22,0:14.56:3.92	0/0:25,0:17.33:3.92	0/0:23,0:15.25:3.92	0/0:16,0:11.09:3.92	0/0:44,0:29.81:3.92	0/0:29,0:18.03:3.92	0/0:21,0:15.94:3.92	0/0:20,4:1.07:3.92	0/0:23,0:15.94:3.92	0/0:21,0:14.56:3.92	0/0:20,2:4.77:3.92	0/0:30,0:20.79:3.92	0/0:23,0:15.95:3.92	0/0:56,8:6.65:3.92	0/0:28,0:18.72:3.92	0/0:30,0:20.80:3.92	0/0:47,0:32.58:3.92	0/0:23,0:17.33:3.92	0/0:10,0:7.63:3.92	0/0:13,0:9.70:3.92	0/0:38,0:24.96:3.92	0/0:14,0:9.70:3.92	0/0:26,0:18.02:3.92	0/0:13,0:8.32:3.92	0/0:38,0:26.34:3.92	0/0:6,0:4.16:3.92	0/0:22,0:15.95:3.92	0/0:24,0:13.86:3.92	0/0:22,0:14.55:3.92	0/0:14,0:9.71:3.92	0/0:9,0:6.93:3.92	0/0:20,0:13.87:3.92	0/0:19,0:12.48:3.92	0/0:16,0:11.09:3.92	0/0:16,0:10.39:3.92	0/0:18,0:12.48:3.92	0/0:29,0:23.56:3.92	0/0:33,0:22.87:3.92	0/0:24,0:17.33:3.92	0/0:27,0:20.10:3.92	0/0:9,0:6.94:3.92	0/0:32,0:21.49:3.92	0/0:38,0:25.64:3.92	0/0:16,0:11.09:3.92	0/0:16,0:11.09:3.92	0/0:22,0:15.25:3.92	0/0:18,0:13.86:3.92	0/0:35,0:24.26:3.92	0/0:22,0:17.33:3.92	0/0:18,0:12.48:3.92	0/0:17,0:11.79:3.92	0/0:16,0:11.78:3.92	0/0:32,1:17.59:3.92	0/0:11,0:7.62:3.92	0/0:18,0:11.79:3.92	0/0:40,0:27.72:3.92	0/0:29,0:19.41:3.92	0/0:23,1:11.30:3.92	0/0:20,0:13.17:3.92	0/0:18,0:13.17:3.92
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1	52800	var_3542194	G	A	.	MAPQ,PF_FAIL_REPEAT	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	0/0:15,0:10.40:11.86	0/0:17,0:13.17:11.86	0/0:23,3:3.18:11.86	0/1:7,3:4.93:11.86	0/0:25,0:15.94:11.86	0/0:14,2:4.54:11.86	0/1:10,5:10.38:11.86	0/0:24,1:11.94:11.86	0/0:16,0:9.70:11.86	0/0:22,2:6.64:11.86	0/1:18,3:2.61:11.86	0/0:11,0:7.63:11.86	0/0:23,1:11.12:11.86	0/0:12,0:8.31:11.86	0/0:29,3:5.73:11.86	0/0:43,0:30.50:11.86	0/0:15,0:9.71:11.86	0/0:19,0:12.48:11.86	0/1:11,3:4.21:11.86	0/1:19,5:5.75:11.86	0/0:16,0:11.09:11.86	0/0:18,3:0.91:11.86	0/1:43,9:2.35:11.86	0/0:41,2:18.78:11.86	0/0:35,0:23.57:11.86	0/0:25,0:17.33:11.86	0/0:15,0:11.09:11.86	0/0:22,0:14.56:11.86	0/0:13,0:9.01:11.86	0/1:22,5:1.57:11.86	0/0:23,0:15.25:11.86	0/0:51,5:14.36:11.86	0/0:23,1:11.91:11.86	0/1:12,4:6.93:11.86	0/0:54,0:36.74:11.86	0/0:32,0:20.80:11.86	0/0:20,1:8.23:11.86	0/0:20,0:15.94:11.86	0/0:44,3:17.61:11.86	0/0:14,1:5.57:11.86	0/0:29,0:20.10:11.86	0/0:22,2:8.57:11.86	0/1:24,11:18.74:11.86	0/0:4,0:2.77:11.86	0/1:16,4:5.55:11.86	0/1:13,4:2.65:11.86	0/1:20,6:7.32:11.86	0/1:13,2:0.13:11.86	0/0:15,0:11.09:11.86	0/0:30,0:22.18:11.86	0/0:19,0:13.86:11.86	0/0:18,0:11.78:11.86	0/0:23,0:15.95:11.86	0/0:26,2:9.03:11.86	0/0:28,2:10.67:11.86	0/0:13,0:8.32:11.86	0/0:23,0:16.64:11.86	0/0:17,0:12.48:11.86	0/1:15,4:3.93:11.86	0/0:27,0:18.02:11.86	0/0:36,0:22.87:11.86	0/1:13,4:2.29:11.86	0/0:17,3:0.42:11.86	0/0:24,0:17.32:11.86	0/0:21,2:5.51:11.86	0/1:24,9:17.20:11.86	0/0:26,0:18.03:11.86	0/0:21,0:15.94:11.86	0/0:16,0:11.09:11.86	0/1:18,4:1.48:11.86	0/0:24,0:18.02:11.86	0/0:12,0:8.32:11.86	0/0:10,0:7.63:11.86	0/0:21,0:15.25:11.86	0/0:24,0:14.55:11.86	0/0:19,0:11.79:11.86	0/1:25,5:0.27:11.86	0/0:14,0:9.01:11.86
1	55724	var_5032024	N	G	.	MAPQ,PF_FAIL_REPEAT	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	0/0:13,0:10.40:2.25	0/0:15,0:11.09:2.25	0/0:26,0:17.33:2.25	0/0:12,0:8.32:2.25	0/0:29,0:20.10:2.25	0/0:16,0:10.40:2.25	0/0:27,0:18.71:2.25	0/0:24,0:19.41:2.25	0/0:15,0:10.40:2.25	0/0:10,0:6.24:2.25	0/0:19,0:13.87:2.25	0/0:6,0:4.16:2.25	0/0:18,0:13.86:2.25	0/0:12,0:8.31:2.25	0/0:22,0:13.87:2.25	0/0:44,0:29.81:2.25	0/0:20,0:15.25:2.25	0/0:13,0:9.71:2.25	0/0:19,0:14.56:2.25	0/0:28,0:19.41:2.25	0/0:25,0:18.02:2.25	0/0:20,0:13.17:2.25	0/0:37,0:26.34:2.25	0/0:29,0:20.79:2.25	0/0:22,0:14.56:2.25	0/0:16,0:11.09:2.25	0/0:21,0:14.55:2.25	0/0:20,0:13.86:2.25	0/0:28,0:18.72:2.25	0/0:18,0:13.17:2.25	0/0:21,0:15.25:2.25	0/0:40,1:24.37:2.25	0/0:24,2:6.49:2.25	0/0:26,0:18.71:2.25	0/0:60,0:40.21:2.25	0/0:35,0:23.57:2.25	0/0:16,0:10.40:2.25	0/0:17,0:11.78:2.25	0/0:31,0:20.79:2.25	0/0:20,0:15.25:2.25	0/0:25,0:17.33:2.25	0/0:17,0:11.09:2.25	0/0:36,0:25.65:2.25	0/0:3,0:2.08:2.25	0/0:21,0:13.87:2.25	0/0:25,0:16.63:2.25	0/0:26,0:18.02:2.25	0/0:15,0:10.40:2.25	0/0:21,0:14.56:2.25	0/0:16,0:11.09:2.25	0/1:13,3:0.62:2.25	0/0:12,0:9.70:2.25	0/0:21,0:14.56:2.25	0/0:12,0:9.01:2.25	0/0:38,1:22.32:2.25	0/0:29,0:20.10:2.25	0/0:33,0:22.88:2.25	0/0:22,0:15.25:2.25	0/0:12,0:7.63:2.25	0/0:29,0:20.79:2.25	0/0:41,0:27.72:2.25	0/0:17,0:10.40:2.25	0/0:16,0:11.09:2.25	0/0:27,0:18.72:2.25	0/0:23,0:16.64:2.25	0/0:34,0:23.57:2.25	0/0:21,0:14.55:2.25	0/0:12,0:9.01:2.25	0/0:20,0:14.56:2.25	0/0:12,0:8.32:2.25	0/0:36,0:24.26:2.25	0/0:11,0:8.32:2.25	0/0:23,0:15.25:2.25	0/0:28,0:18.72:2.25	0/0:29,0:20.10:2.25	0/0:27,0:18.71:2.25	0/0:24,0:15.94:2.25	0/0:13,0:9.01:2.25
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1	57292	var_4333481	C	T	.	MAPQ	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	0/0:17,0:13.17:8.63	0/0:13,0:8.32:8.63	0/0:18,0:13.86:8.63	0/0:11,0:7.63:8.63	0/0:24,0:16.64:8.63	0/0:11,0:6.93:8.63	0/0:17,0:11.09:8.63	0/0:21,0:14.56:8.63	0/0:23,0:15.94:8.63	0/1:17,4:0.87:8.63	0/0:29,0:19.41:8.63	0/0:8,1:1.52:8.63	0/0:23,0:15.94:8.63	0/0:15,0:11.09:8.63	0/0:18,0:11.79:8.63	0/0:27,0:18.02:8.63	0/0:13,0:9.02:8.63	0/0:9,0:7.63:8.63	0/0:25,0:17.33:8.63	0/0:22,0:15.25:8.63	0/0:23,3:4.63:8.63	0/0:18,0:13.17:8.63	0/0:48,0:32.58:8.63	0/0:19,0:13.17:8.63	0/0:19,0:13.87:8.63	0/0:17,0:11.09:8.63	0/0:20,0:14.55:8.63	0/0:17,0:11.78:8.63	0/0:19,0:13.17:8.63	0/0:21,0:13.86:8.63	0/0:13,1:4.13:8.63	0/0:46,0:33.97:8.63	0/0:31,0:20.80:8.63	0/0:25,0:16.63:8.63	0/0:70,0:49.21:8.63	0/0:29,0:17.33:8.63	0/0:19,0:13.17:8.63	0/0:19,0:12.48:8.63	0/0:35,0:24.96:8.63	0/0:8,0:5.54:8.63	0/0:28,1:14.62:8.63	0/0:15,0:10.40:8.63	0/0:20,0:15.95:8.63	0/0:4,0:2.77:8.63	0/0:24,0:16.63:8.63	0/0:17,0:12.47:8.63	0/0:19,0:13.86:8.63	0/0:11,0:7.62:8.63	0/0:17,0:12.48:8.63	0/0:24,0:15.95:8.63	0/0:16,0:11.78:8.63	0/0:13,0:8.32:8.63	0/0:18,0:14.56:8.63	0/0:16,0:10.40:8.63	0/0:19,0:12.48:8.63	0/0:25,0:16.64:8.63	0/0:27,0:20.10:8.63	0/0:20,0:13.87:8.63	0/0:18,0:13.17:8.63	0/0:24,0:18.02:8.63	0/0:35,0:23.57:8.63	0/0:18,0:11.78:8.63	0/0:12,0:8.32:8.63	0/0:21,0:14.55:8.63	0/0:13,0:8.32:8.63	0/0:27,0:20.79:8.63	0/0:16,0:11.78:8.63	0/0:19,0:12.48:8.63	0/0:11,0:8.32:8.63	0/0:15,0:11.09:8.63	0/0:35,0:22.88:8.63	0/0:10,0:6.24:8.63	0/1:21,8:10.56:8.63	0/0:34,0:24.26:8.63	0/0:25,0:16.63:8.63	0/0:27,0:18.02:8.63	0/0:22,0:15.94:8.63	0/0:18,0:13.17:8.63
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1	65591	var_4194697	C	T	.	MAPQ,PF_FAIL_REPEAT	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	0/0:7,1:0.18:22.48	0/0:13,1:5.10:22.48	0/1:17,6:10.06:22.48	0/0:6,0:5.54:22.48	0/1:10,3:5.36:22.48	0/0:8,0:5.55:22.48	0/0:17,2:2.66:22.48	0/0:11,0:7.63:22.48	0/1:13,4:5.29:22.48	0/1:16,4:4.34:22.48	0/1:12,5:10.42:22.48	0/0:5,0:3.46:22.48	0/0:16,2:2.13:22.48	0/1:5,2:3.94:22.48	0/1:19,7:11.87:22.48	0/1:19,6:6.55:22.48	0/1:16,3:1.71:22.48	0/0:5,0:3.46:22.48	0/1:13,5:10.29:22.48	0/1:6,3:8.27:22.48	0/0:23,0:15.94:22.48	0/1:13,5:8.46:22.48	0/1:29,8:11.50:22.48	0/1:13,7:10.29:22.48	0/0:18,0:11.79:22.48	0/1:12,3:1.69:22.48	0/1:11,5:9.57:22.48	0/1:18,5:6.96:22.48	0/1:11,5:11.00:22.48	0/1:19,4:2.04:22.48	0/0:9,1:1.35:22.48	0/1:36,8:8.59:22.48	0/1:8,2:3.91:22.48	0/1:19,5:4.38:22.48	0/1:45,15:25.67:22.48	0/0:13,2:0.36:22.48	0/0:14,0:9.01:22.48	0/0:12,1:4.04:22.48	0/1:15,6:10.99:22.48	0/0:7,1:0.72:22.48	0/0:30,4:5.52:22.48	0/1:8,2:1.82:22.48	0/1:19,4:2.88:22.48	0/0:1,0:0.70:22.48	0/1:7,4:10.41:22.48	0/1:13,6:11.30:22.48	0/1:8,2:2.56:22.48	0/1:3,1:2.15:22.48	0/0:16,0:11.09:22.48	0/1:12,7:16.91:22.48	0/0:9,0:6.24:22.48	0/0:7,1:0.29:22.48	0/1:12,5:9.79:22.48	0/0:9,0:6.24:22.48	0/1:14,14:30.47:22.48	0/0:20,2:4.81:22.48	0/1:22,5:3.49:22.48	0/1:17,9:15.40:22.48	0/1:12,3:3.19:22.48	0/0:11,0:6.94:22.48	0/0:26,0:18.02:22.48	0/0:7,0:4.16:22.48	0/1:9,7:15.01:22.48	0/0:25,0:17.32:22.48	0/1:13,8:14.11:22.48	0/1:24,8:15.69:22.48	0/1:9,4:8.64:22.48	0/1:10,6:15.26:22.48	0/1:14,4:4.69:22.48	0/1:9,2:1.63:22.48	0/1:12,5:9.85:22.48	0/0:8,1:1.30:22.48	0/0:14,2:0.08:22.48	0/0:27,4:2.82:22.48	0/0:12,2:0.33:22.48	0/0:11,0:6.93:22.48	0/1:18,6:7.11:22.48	0/1:5,2:4.46:22.48
1	65745	var_4305725	A	G	.	MAPQ,PF_FAIL_REPEAT	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	0/1:6,2:4.50:21.70	0/0:6,0:4.16:21.70	0/1:10,2:2.77:21.70	0/0:5,0:3.47:21.70	0/0:4,0:2.78:21.70	0/0:9,0:6.24:21.70	0/1:10,3:4.95:21.70	0/0:13,0:9.01:21.70	0/0:15,2:1.66:21.70	0/1:9,2:1.67:21.70	0/0:10,0:4.85:21.70	0/0:9,0:6.24:21.70	0/1:8,6:16.84:21.70	0/1:5,3:6.90:21.70	0/0:17,2:3.78:21.70	0/1:21,6:7.94:21.70	0/1:9,2:3.49:21.70	0/0:6,1:0.05:21.70	0/1:15,4:5.28:21.70	0/1:9,7:21.10:21.70	0/0:17,0:11.78:21.70	0/0:10,1:2.48:21.70	0/1:28,11:18.75:21.70	0/1:9,6:16.78:21.70	0/0:9,1:1.24:21.70	0/1:17,3:1.00:21.70	0/1:5,1:0.93:21.70	0/1:8,10:20.10:21.70	0/1:5,6:13.77:21.70	0/0:10,1:1.64:21.70	0/1:8,4:10.82:21.70	0/1:33,7:6.63:21.70	0/1:8,2:3.21:21.70	0/1:6,11:13.43:21.70	0/1:31,12:27.08:21.70	0/0:16,2:2.44:21.70	0/0:8,0:5.55:21.70	0/1:4,2:5.09:21.70	0/1:15,8:18.14:21.70	0/1:4,1:1.36:21.70	0/0:21,2:6.37:21.70	0/1:6,4:6.13:21.70	0/0:22,1:10.44:21.70	0/1:1,2:1.60:21.70	0/1:12,2:0.21:21.70	0/1:11,8:18.31:21.70	0/1:4,3:8.62:21.70	0/1:4,2:4.98:21.70	0/1:12,5:9.86:21.70	0/1:18,4:4.32:21.70	0/0:7,0:4.85:21.70	0/1:6,3:7.73:21.70	0/1:10,4:6.83:21.70	0/0:15,0:10.40:21.70	0/1:12,6:13.41:21.70	0/0:16,2:2.03:21.70	0/0:12,1:3.47:21.70	0/1:13,3:3.37:21.70	0/1:5,1:0.74:21.70	0/0:15,0:11.09:21.70	0/0:39,0:25.64:21.70	0/0:6,0:4.16:21.70	0/1:3,4:7.90:21.70	0/0:10,0:6.94:21.70	0/1:4,2:5.57:21.70	0/1:15,5:12.73:21.70	0/1:15,6:7.38:21.70	0/1:8,2:3.35:21.70	0/1:10,4:7.46:21.70	0/1:6,5:12.47:21.70	0/0:30,5:2.63:21.70	0/1:6,3:9.63:21.70	0/0:15,1:5.93:21.70	0/1:20,8:13.68:21.70	0/0:13,2:1.02:21.70	0/0:13,1:3.68:21.70	0/0:18,0:13.17:21.70	0/1:2,2:6.55:21.70
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1	330018	var_603507	C	G	.	MAPQ,PF_FAIL_REPEAT	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	0/0:94,0:65.16:42.20	0/0:58,0:40.21:42.20	0/0:207,0:143.48:42.20	0/0:31,0:21.49:42.20	0/0:109,0:75.55:42.20	0/0:51,0:35.35:42.20	0/0:37,0:25.65:42.20	0/0:93,0:64.47:42.20	0/0:41,0:28.42:42.20	0/0:26,0:18.02:42.20	0/0:46,0:31.89:42.20	0/0:58,0:40.21:42.20	0/0:112,0:77.63:42.20	0/0:17,0:11.78:42.20	0/0:51,0:35.35:42.20	0/0:126,0:87.33:42.20	0/0:137,0:94.97:42.20	0/0:30,0:20.79:42.20	0/0:108,0:74.86:42.20	0/0:64,0:44.36:42.20	0/0:63,0:43.67:42.20	0/0:53,0:36.74:42.20	0/0:117,0:81.10:42.20	0/0:27,0:18.72:42.20	0/0:167,0:115.76:42.20	0/0:33,0:22.87:42.20	0/0:43,0:29.81:42.20	0/0:84,0:58.23:42.20	0/0:51,0:35.35:42.20	0/0:119,0:82.48:42.20	0/0:131,0:90.80:42.20	0/0:166,0:115.06:42.20	0/0:86,0:59.61:42.20	0/0:52,0:36.04:42.20	0/0:127,0:88.03:42.20	0/0:69,0:47.83:42.20	0/0:38,0:26.34:42.20	0/0:40,0:27.72:42.20	0/0:204,0:141.40:42.20	0/0:40,0:27.72:42.20	0/0:99,0:68.62:42.20	0/0:57,0:39.51:42.20	0/0:107,0:74.17:42.20	0/0:23,0:15.94:42.20	0/0:61,0:42.28:42.20	0/0:27,0:18.71:42.20	0/0:44,0:30.50:42.20	0/0:42,0:29.12:42.20	0/0:98,0:67.93:42.20	0/0:76,0:52.68:42.20	0/0:33,0:22.87:42.20	0/0:70,0:48.52:42.20	0/0:143,0:99.12:42.20	0/0:34,0:23.56:42.20	0/0:99,0:68.62:42.20	0/0:127,0:88.03:42.20	0/0:142,0:98.43:42.20	0/0:127,0:88.03:42.20	0/0:34,0:23.57:42.20	0/0:108,0:74.86:42.20	0/0:97,0:67.24:42.20	0/0:32,0:22.19:42.20	0/0:37,0:25.64:42.20	0/0:109,0:75.55:42.20	0/0:37,0:25.65:42.20	0/0:148,0:102.58:42.20	0/0:41,0:28.42:42.20	0/0:79,0:54.76:42.20	0/0:43,0:29.81:42.20	0/0:47,0:32.58:42.20	0/0:100,0:69.32:42.20	0/0:42,0:29.11:42.20	0/0:32,0:22.18:42.20	0/0:109,0:75.56:42.20	0/0:38,0:26.34:42.20	0/0:88,0:60.99:42.20	0/0:52,0:36.05:42.20	0/0:47,0:32.58:42.20
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1	533563	var_2155954	C	A	.	MAPQ,PF_FAIL_REPEAT	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	0/0:315,0:190.21:96.66	0/0:207,0:143.48:96.66	0/0:683,1:2.58:96.66	0/0:103,1:67.31:96.66	0/0:286,0:198.24:96.66	0/0:167,0:115.76:96.66	0/0:74,0:51.30:96.66	0/0:219,0:151.80:96.66	0/0:81,0:56.14:96.66	0/0:57,0:39.51:96.66	0/0:221,0:153.19:96.66	0/0:189,0:87.16:96.66	0/0:414,0:200.75:96.66	0/0:38,0:26.34:96.66	0/0:251,0:173.98:96.66	0/0:304,0:210.72:96.66	0/0:506,0:162.40:96.66	0/0:130,0:90.11:96.66	0/0:363,0:119.56:96.66	0/0:150,0:103.97:96.66	0/0:289,0:176.86:96.66	0/0:207,0:143.48:96.66	0/0:336,0:232.90:96.66	0/0:212,0:146.95:96.66	0/0:569,0:194.05:96.66	0/0:77,0:53.37:96.66	0/0:125,1:82.24:96.66	0/0:370,0:175.53:96.66	0/0:173,0:119.91:96.66	0/0:193,0:133.77:96.66	0/0:350,0:242.60:96.66	0/0:322,0:223.20:96.66	0/0:373,0:181.61:96.66	0/0:78,0:54.06:96.66	0/0:411,0:284.88:96.66	0/0:231,0:160.11:96.66	0/0:184,0:127.54:96.66	0/0:115,0:79.71:96.66	0/0:506,0:178.07:96.66	0/0:168,0:114.46:96.66	0/0:335,1:213.53:96.66	0/0:249,0:47.46:96.66	0/0:256,0:177.45:96.66	0/0:54,0:34.21:96.66	0/0:135,0:93.58:96.66	0/0:51,0:35.35:96.66	0/0:224,0:148.15:96.66	0/0:97,0:67.24:96.66	0/0:336,0:153.86:96.66	0/0:180,0:124.77:96.66	0/0:126,0:87.33:96.66	0/0:279,0:169.84:96.66	0/0:317,1:153.79:96.66	0/0:40,0:27.72:96.66	0/0:282,0:195.47:96.66	0/0:296,0:205.17:96.66	0/0:284,0:196.85:96.66	0/0:179,0:124.07:96.66	0/0:101,0:70.01:96.66	0/0:277,0:192.00:96.66	0/0:216,0:149.72:96.66	0/0:109,0:75.55:96.66	0/0:77,0:53.37:96.66	0/0:242,0:167.74:96.66	0/0:127,0:88.03:96.66	0/0:680,0:78.80:96.66	0/0:66,0:45.74:96.66	0/0:302,0:209.33:96.66	0/0:87,0:60.31:96.66	0/0:159,0:110.21:96.66	0/0:405,0:109.43:96.66	0/0:145,0:100.51:96.66	0/0:31,0:21.48:96.66	0/0:420,1:167.69:96.66	0/0:176,0:122.00:96.66	0/0:89,0:61.69:96.66	0/0:34,0:23.57:96.66	0/0:69,0:47.83:96.66
1	533836	var_3224063	T	C	.	MAPQ,PF_FAIL_REPEAT	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	0/0:350,0:174.84:103.01	0/0:237,0:164.27:103.01	1/1:755,0:66.30:103.01	0/0:122,0:84.57:103.01	0/0:292,0:202.39:103.01	0/0:189,0:131.00:103.01	0/0:87,0:60.30:103.01	0/0:239,0:165.67:103.01	0/0:95,0:65.85:103.01	0/0:64,0:44.36:103.01	0/0:273,0:173.90:103.01	0/0:198,0:82.25:103.01	0/0:433,0:190.70:103.01	0/0:45,0:31.19:103.01	0/0:299,0:202.03:103.01	0/0:437,0:146.08:103.01	0/0:545,1:129.17:103.01	0/0:133,0:92.19:103.01	0/0:429,0:70.26:103.01	0/0:222,0:153.88:103.01	0/0:309,0:168.64:103.01	0/0:217,0:150.41:103.01	0/0:347,0:240.52:103.01	0/0:235,0:162.89:103.01	0/0:567,0:195.35:103.01	0/0:125,0:86.64:103.01	0/0:129,0:89.42:103.01	0/0:392,0:163.53:103.01	0/0:174,0:120.61:103.01	0/0:255,0:176.75:103.01	0/0:458,0:203.14:103.01	0/0:431,1:293.31:103.01	0/0:377,0:179.58:103.01	0/0:107,0:74.17:103.01	0/0:403,0:279.33:103.01	0/0:279,0:193.39:103.01	0/0:198,0:125.53:103.01	0/0:159,0:110.21:103.01	0/0:709,0:11.80:103.01	0/0:172,0:113.21:103.01	0/0:368,0:206.34:103.01	0/0:270,0:29.87:103.01	0/0:248,0:171.90:103.01	0/0:67,0:28.59:103.01	0/0:165,0:114.37:103.01	0/0:55,0:38.12:103.01	0/0:249,0:138.69:103.01	0/0:174,0:120.60:103.01	0/0:365,0:137.21:103.01	0/0:242,0:167.74:103.01	0/0:122,0:84.56:103.01	0/0:347,0:136.37:103.01	0/0:359,0:135.92:103.01	0/0:50,0:34.66:103.01	0/0:309,0:205.76:103.01	0/0:344,0:238.44:103.01	0/0:371,1:220.91:103.01	0/0:198,1:132.52:103.01	0/0:126,0:87.34:103.01	0/0:291,0:187.56:103.01	0/0:251,0:173.98:103.01	0/0:141,0:97.73:103.01	0/0:97,0:67.23:103.01	0/0:267,0:168.89:103.01	0/0:180,0:124.77:103.01	0/0:760,0:3.98:103.01	0/0:68,0:47.13:103.01	0/0:330,0:223.34:103.01	0/0:104,0:72.09:103.01	0/0:197,0:133.17:103.01	0/0:395,0:116.51:103.01	0/0:164,0:113.68:103.01	0/0:36,0:24.95:103.01	0/0:432,1:160.57:103.01	0/0:227,0:134.32:103.01	0/0:129,0:89.41:103.01	0/0:33,0:22.87:103.01	0/0:92,0:63.77:103.01
1	534034	var_5069837	G	A	.	MAPQ,PF_FAIL_REPEAT	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	1/1:734,5:195.11:139.50	0/0:402,1:110.49:139.50	1/1:1357,1:917.25:139.50	0/0:192,0:97.30:139.50	0/0:498,6:58.42:139.50	0/0:359,1:95.13:139.50	0/0:151,1:100.11:139.50	0/0:402,2:142.69:139.50	0/0:200,0:138.63:139.50	0/0:161,1:107.29:139.50	1/1:715,6:252.41:139.50	1/1:424,0:143.04:139.50	1/1:738,1:71.49:139.50	0/0:142,0:98.43:139.50	1/1:583,2:2.21:139.50	1/1:1172,6:784.25:139.50	1/1:956,2:308.55:139.50	0/0:280,2:33.13:139.50	1/1:815,0:386.30:139.50	0/0:410,2:158.05:139.50	1/1:557,3:35.53:139.50	1/1:583,4:151.54:139.50	1/1:861,10:158.59:139.50	0/0:574,1:81.05:139.50	1/1:1135,2:403.62:139.50	0/0:299,1:38.87:139.50	0/0:237,0:143.33:139.50	1/1:792,4:241.41:139.50	0/0:300,0:156.01:139.50	0/0:526,0:9.86:139.50	1/1:803,1:97.58:139.50	0/0:978,4:208.58:139.50	1/1:636,0:27.25:139.50	0/0:178,1:118.77:139.50	0/0:867,5:315.28:139.50	0/0:439,0:119.91:139.50	0/0:324,1:42.94:139.50	0/0:345,1:34.74:139.50	1/1:1441,1:999.62:139.50	0/0:284,2:37.57:139.50	1/1:643,4:14.42:139.50	1/1:459,3:202.81:139.50	0/0:347,6:195.31:139.50	1/1:123,1:23.69:139.50	0/0:272,0:185.55:139.50	0/0:117,1:76.62:139.50	0/0:386,0:47.59:139.50	0/0:333,3:19.44:139.50	1/1:723,1:224.22:139.50	1/1:800,1:145.43:139.50	0/0:210,0:145.56:139.50	1/1:1003,11:704.01:139.50	1/1:799,6:357.46:139.50	0/0:105,0:72.78:139.50	1/1:665,0:62.90:139.50	0/0:602,2:85.10:139.50	1/1:773,0:91.79:139.50	0/0:390,4:152.97:139.50	0/0:243,1:89.32:139.50	0/0:428,3:98.11:139.50	0/0:441,0:192.38:139.50	0/0:225,0:88.05:139.50	0/0:206,2:94.53:139.50	1/1:518,6:37.31:139.50	0/0:340,0:126.91:139.50	1/1:1293,4:697.04:139.50	0/0:146,1:96.69:139.50	1/1:699,5:70.31:139.50	0/0:205,0:142.10:139.50	1/1:420,4:47.12:139.50	1/1:631,4:125.29:139.50	0/0:257,0:95.18:139.50	0/0:144,3:88.21:139.50	1/1:767,1:148.21:139.50	0/0:301,1:89.19:139.50	0/0:289,3:175.24:139.50	0/0:75,0:51.98:139.50	0/0:201,3:124.19:139.50
1	539281	var_5298932_sub_snp_1	C	G	.	MAPQ	SVLEN=0;SVTYPE=SNP_FROM_COMPLEX	GT:COV:GT_CONF:SITE_CONF	0/0:2,0:1.38:74.03	0/0:6,0:4.16:74.03	0/0:4,0:2.08:74.03	0/0:4,0:3.47:74.03	0/0:9,1:0.40:74.03	0/0:2,0:1.39:74.03	0/0:2,0:1.39:74.03	0/0:8,0:4.85:74.03	0/0:0,0:0.00:74.03	0/0:1,0:0.69:74.03	0/0:0,0:0.00:74.03	0/0:4,0:2.78:74.03	0/0:13,0:8.32:74.03	1/1:0,2:1.38:74.03	0/0:0,0:0.00:74.03	0/0:0,0:0.00:74.03	0/0:7,0:4.85:74.03	0/0:3,0:2.08:74.03	0/0:0,0:0.00:74.03	0/0:0,0:0.00:74.03	0/0:2,0:1.39:74.03	1/1:0,5:3.46:74.03	0/0:4,0:4.16:74.03	0/0:0,0:0.00:74.03	1/1:0,15:10.40:74.03	0/0:0,0:0.00:74.03	0/0:3,0:2.08:74.03	0/0:1,0:0.70:74.03	0/0:4,0:2.77:74.03	0/0:0,0:0.00:74.03	0/0:0,0:0.00:74.03	0/0:0,0:0.00:74.03	0/0:12,0:7.62:74.03	0/0:0,0:0.00:74.03	0/0:11,0:8.32:74.03	0/0:6,0:4.16:74.03	1/1:0,1:0.70:74.03	0/0:0,0:0.00:74.03	0/0:1,0:0.69:74.03	1/1:0,1:0.69:74.03	0/0:7,0:4.85:74.03	0/0:0,0:0.00:74.03	0/0:12,0:7.62:74.03	0/0:0,0:0.00:74.03	1/1:0,7:4.85:74.03	0/0:0,0:0.00:74.03	1/1:0,5:3.47:74.03	0/0:0,0:0.00:74.03	0/0:5,0:3.46:74.03	0/0:0,0:0.00:74.03	0/0:7,0:4.86:74.03	0/0:0,0:0.00:74.03	0/0:2,0:1.39:74.03	0/0:5,0:3.47:74.03	0/0:0,0:0.00:74.03	0/0:2,0:1.39:74.03	0/0:8,0:5.54:74.03	0/0:1,0:0.69:74.03	0/0:0,0:0.00:74.03	0/0:8,0:4.85:74.03	0/0:3,0:2.08:74.03	0/0:0,0:0.00:74.03	0/0:0,0:0.00:74.03	0/0:4,0:2.77:74.03	1/1:0,7:4.86:74.03	1/1:0,3:2.08:74.03	0/0:0,0:0.00:74.03	0/0:3,0:2.08:74.03	0/0:0,0:0.00:74.03	0/0:0,0:0.00:74.03	0/0:6,0:4.16:74.03	0/0:0,0:0.00:74.03	0/0:0,0:0.00:74.03	0/0:7,0:4.86:74.03	0/0:0,0:0.00:74.03	0/0:2,0:1.39:74.03	0/0:6,0:4.16:74.03	0/0:1,0:0.70:74.03
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1	564124	var_423723	C	T	.	MAPQ,PF_FAIL_REPEAT	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	0/0:42,0:31.19:16.67	0/0:34,0:23.57:16.67	0/0:48,0:33.96:16.67	0/0:15,0:10.40:16.67	0/0:36,0:25.65:16.67	0/0:47,0:33.97:16.67	0/0:33,0:22.18:16.67	0/0:35,0:27.73:16.67	0/0:42,0:30.50:16.67	0/0:28,0:20.10:16.67	0/0:46,0:30.49:16.67	0/0:27,0:19.41:16.67	0/0:49,0:33.27:16.67	0/0:26,0:19.41:16.67	0/0:33,0:22.87:16.67	0/0:54,0:37.43:16.67	0/0:54,0:37.43:16.67	0/0:22,2:7.73:16.67	0/0:40,0:29.11:16.67	0/0:59,0:38.12:16.67	0/0:36,0:24.26:16.67	0/0:45,0:31.19:16.67	0/0:63,0:46.44:16.67	0/0:48,0:31.88:16.67	0/0:45,0:31.88:16.67	0/0:19,0:14.56:16.67	0/0:33,0:22.18:16.67	0/0:51,0:36.05:16.67	0/0:22,0:15.94:16.67	0/0:46,0:31.20:16.67	0/0:61,0:44.36:16.67	0/0:70,0:48.52:16.67	0/0:51,3:22.28:16.67	0/0:38,0:25.64:16.67	0/0:93,0:63.77:16.67	0/0:42,0:30.50:16.67	0/0:25,1:11.70:16.67	0/0:30,0:20.10:16.67	0/0:46,8:4.04:16.67	0/0:23,0:15.25:16.67	0/0:52,0:38.12:16.67	0/0:20,0:13.86:16.67	0/0:31,0:20.10:16.67	0/0:9,0:5.54:16.67	0/0:30,0:19.41:16.67	0/0:29,0:20.79:16.67	0/0:28,0:19.41:16.67	0/0:27,0:18.02:16.67	0/0:43,0:31.20:16.67	0/0:45,0:32.58:16.67	0/0:40,1:21.14:16.67	0/0:32,0:22.87:16.67	0/0:32,0:22.87:16.67	0/0:23,0:16.63:16.67	0/0:57,0:38.82:16.67	0/0:50,0:34.66:16.67	0/0:49,0:32.58:16.67	0/0:41,0:29.80:16.67	0/0:28,0:19.41:16.67	0/0:31,0:20.79:16.67	0/0:48,0:36.04:16.67	0/0:21,0:14.55:16.67	0/0:24,0:18.71:16.67	0/0:49,0:32.58:16.67	0/0:31,0:22.18:16.67	0/0:71,5:28.56:16.67	0/0:33,0:22.18:16.67	0/0:45,0:31.19:16.67	0/0:28,0:18.72:16.67	0/0:25,0:19.41:16.67	0/0:48,0:33.96:16.67	0/0:35,0:24.26:16.67	0/0:29,0:19.40:16.67	0/0:53,0:36.74:16.67	0/0:36,0:27.73:16.67	0/0:42,0:28.42:16.67	0/0:22,0:15.25:16.67	0/0:27,0:20.80:16.67
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1	564475	var_3783519	C	G	.	MAPQ,PF_FAIL_REPEAT	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	1/1:1397,0:1224.95:189.47	1/1:1133,0:841.04:189.47	1/1:2978,0:4336.38:189.47	1/1:821,0:765.99:189.47	1/1:2490,0:3571.42:189.47	1/1:1530,0:1778.69:189.47	1/1:1244,0:1090.60:189.47	1/1:1596,0:1583.09:189.47	1/1:1268,0:1377.43:189.47	1/1:1487,0:1946.67:189.47	1/1:1669,0:1940.51:189.47	1/1:945,0:1071.74:189.47	1/1:886,0:240.39:189.47	0/0:7,0:4.85:189.47	1/1:1227,0:892.33:189.47	1/1:971,0:446.22:189.47	1/1:1927,1:1953.18:189.47	1/1:527,0:251.18:189.47	1/1:1237,0:1100.47:189.47	1/1:1704,0:1716.65:189.47	1/1:1306,0:1158.16:189.47	1/1:1492,0:1739.36:189.47	1/1:2517,0:3035.61:189.47	1/1:1211,0:717.31:189.47	1/1:6022,0:12115.94:189.47	1/1:1083,1:1231.11:189.47	1/1:876,0:606.23:189.47	1/1:1492,0:1361.54:189.47	1/1:1571,0:1768.97:189.47	1/1:1481,0:1498.49:189.47	1/1:1734,0:1529.00:189.47	1/1:5436,2:8038.98:189.47	1/1:1663,0:1663.46:189.47	1/1:1627,0:1786.41:189.47	1/1:3180,3:2886.72:189.47	1/1:1961,0:2386.44:189.47	1/1:932,0:840.39:189.47	1/1:708,0:423.80:189.47	1/1:3836,1:6400.47:189.47	1/1:736,0:574.80:189.47	1/1:1759,0:1751.66:189.47	1/1:1086,0:1380.85:189.47	1/1:1732,0:1663.27:189.47	1/1:413,0:560.22:189.47	1/1:1640,0:1809.89:189.47	1/1:1089,0:895.15:189.47	1/1:1115,0:1038.48:189.47	1/1:1297,0:1626.91:189.47	1/1:2078,0:2815.73:189.47	1/1:1792,0:1753.73:189.47	1/1:1284,0:1238.83:189.47	1/1:1202,0:1012.18:189.47	1/1:1433,0:1430.18:189.47	1/1:743,2:325.00:189.47	1/1:1492,0:1342.01:189.47	1/1:1878,0:1830.41:189.47	1/1:1640,0:1423.92:189.47	1/1:1591,0:1526.14:189.47	1/1:611,0:321.37:189.47	1/1:1430,0:1341.11:189.47	1/1:1961,0:2057.76:189.47	1/1:530,0:242.22:189.47	1/1:749,0:581.61:189.47	1/1:1902,0:2509.60:189.47	1/1:1164,0:989.35:189.47	1/1:2277,0:2478.73:189.47	1/1:1064,0:815.35:189.47	1/1:1856,0:1932.56:189.47	1/1:1868,0:2706.31:189.47	1/1:997,0:929.06:189.47	1/1:1157,0:895.14:189.47	1/1:722,0:472.24:189.47	1/1:977,0:713.28:189.47	1/1:1781,0:1826.67:189.47	1/1:641,0:280.01:189.47	1/1:2236,0:3084.82:189.47	1/1:1272,0:1249.61:189.47	0/0:3,0:2.08:189.47
1	564480	var_1088865	C	T	.	PF_FAIL_REPEAT	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	1/1:1369,0:1172.77:189.77	1/1:1110,0:801.28:189.77	1/1:2908,0:4165.39:189.77	1/1:804,0:733.38:189.77	1/1:2416,0:3392.51:189.77	1/1:1506,0:1727.05:189.77	1/1:1268,0:1135.79:189.77	1/1:1566,1:1529.09:189.77	1/1:1264,1:1374.17:189.77	1/1:1484,1:1944.76:189.77	1/1:1641,0:1880.26:189.77	1/1:953,2:1097.57:189.77	1/1:876,0:227.77:189.77	0/0:4,0:2.77:189.77	1/1:1196,0:839.28:189.77	1/1:953,0:420.20:189.77	1/1:1873,0:1839.93:189.77	1/1:517,0:236.58:189.77	1/1:1203,0:1036.79:189.77	1/1:1687,0:1682.65:189.77	1/1:1288,1:1129.67:189.77	1/1:1462,0:1674.78:189.77	1/1:2444,0:2875.76:189.77	1/1:1195,0:691.99:189.77	1/1:6042,1:12181.88:189.77	1/1:1056,0:1169.11:189.77	1/1:879,0:611.30:189.77	1/1:1465,0:1310.22:189.77	1/1:1572,0:1771.08:189.77	1/1:1427,1:1396.29:189.77	1/1:1671,0:1411.75:189.77	1/1:5314,7:7761.10:189.77	1/1:1589,0:1517.29:189.77	1/1:1617,1:1770.78:189.77	1/1:3050,0:2625.57:189.77	1/1:1895,0:2241.38:189.77	1/1:915,0:808.29:189.77	1/1:693,0:400.07:189.77	1/1:3804,0:6309.71:189.77	1/1:735,0:573.02:189.77	1/1:1725,1:1689.69:189.77	1/1:1060,1:1326.91:189.77	1/1:1715,1:1635.57:189.77	1/1:406,0:543.84:189.77	1/1:1645,0:1820.41:189.77	1/1:1089,0:895.15:189.77	1/1:1098,0:1005.84:189.77	1/1:1263,0:1550.81:189.77	1/1:2048,2:2755.23:189.77	1/1:1783,0:1735.97:189.77	1/1:1278,0:1227.07:189.77	1/1:1197,1:1008.26:189.77	1/1:1399,1:1368.02:189.77	1/1:746,0:319.57:189.77	1/1:1465,2:1301.18:189.77	1/1:1888,0:1850.17:189.77	1/1:1661,0:1463.24:189.77	1/1:1562,0:1469.67:189.77	1/1:622,0:338.20:189.77	1/1:1363,0:1213.06:189.77	1/1:1930,1:2000.08:189.77	1/1:525,1:239.81:189.77	1/1:744,0:572.78:189.77	1/1:1859,0:2410.44:189.77	1/1:1138,0:941.64:189.77	1/1:2224,0:2368.76:189.77	1/1:1075,0:834.81:189.77	1/1:1845,0:1910.15:189.77	1/1:1872,0:2716.10:189.77	1/1:975,0:886.90:189.77	1/1:1161,0:902.22:189.77	1/1:729,0:483.82:189.77	1/1:992,1:744.45:189.77	1/1:1729,1:1727.68:189.77	1/1:626,0:258.72:189.77	1/1:2225,0:3058.70:189.77	1/1:1241,0:1188.63:189.77	0/0:3,0:2.08:189.77
1	564482	var_4144384	T	G	.	PF_FAIL_REPEAT;MISMAPPED_UNPLACEABLE	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	0/0:0,0:0.00:0.22	0/0:0,0:0.00:0.22	0/0:0,0:0.00:0.22	0/0:0,0:0.00:0.22	0/0:1,0:0.70:0.22	0/0:0,0:0.00:0.22	0/0:1,0:0.70:0.22	1/1:0,3:2.08:0.22	0/0:1,0:0.70:0.22	0/0:0,0:0.00:0.22	0/0:0,0:0.00:0.22	0/0:0,0:0.00:0.22	0/0:0,0:0.00:0.22	0/0:0,0:0.00:0.22	0/0:0,0:0.00:0.22	1/1:0,1:0.69:0.22	0/0:0,0:0.00:0.22	0/0:1,0:0.69:0.22	0/0:1,0:0.69:0.22	0/0:0,0:0.00:0.22	0/0:2,0:1.38:0.22	0/0:0,0:0.00:0.22	0/0:1,0:0.69:0.22	0/0:0,0:0.00:0.22	0/0:0,0:0.00:0.22	0/0:1,0:0.69:0.22	1/1:0,2:1.38:0.22	0/0:0,0:0.00:0.22	0/0:0,0:0.00:0.22	0/0:0,0:0.00:0.22	0/0:2,0:1.39:0.22	0/1:4,8:13.01:0.22	1/1:0,1:0.70:0.22	0/0:1,0:0.69:0.22	0/1:3,3:12.54:0.22	0/0:0,0:0.00:0.22	0/0:0,0:0.00:0.22	0/0:0,0:0.00:0.22	0/1:1,1:4.20:0.22	0/0:0,0:0.00:0.22	0/0:0,0:0.00:0.22	0/0:2,0:1.39:0.22	0/0:0,0:0.00:0.22	0/0:0,0:0.00:0.22	0/0:0,0:0.00:0.22	0/0:0,0:0.00:0.22	0/0:0,0:0.00:0.22	1/1:0,1:0.70:0.22	0/0:1,0:0.69:0.22	0/0:1,0:0.70:0.22	0/0:1,0:0.70:0.22	0/0:0,0:0.00:0.22	0/0:0,0:0.00:0.22	0/1:2,1:3.11:0.22	0/0:0,0:0.00:0.22	0/0:0,0:0.00:0.22	0/0:0,0:0.00:0.22	0/0:0,0:0.00:0.22	0/0:0,0:0.00:0.22	0/0:1,0:0.69:0.22	0/1:1,1:4.15:0.22	0/0:0,0:0.00:0.22	0/0:0,0:0.00:0.22	1/1:0,1:0.69:0.22	0/0:0,0:0.00:0.22	0/0:0,0:0.00:0.22	0/0:0,0:0.00:0.22	1/1:0,1:0.70:0.22	0/0:0,0:0.00:0.22	0/0:0,0:0.00:0.22	0/0:0,0:0.00:0.22	0/0:0,0:0.00:0.22	0/0:0,0:0.00:0.22	0/0:0,0:0.00:0.22	0/0:0,0:0.00:0.22	0/0:3,0:2.08:0.22	0/0:0,0:0.00:0.22	0/0:0,0:0.00:0.22
1	564486	var_3956188	C	T	.	PF_FAIL_REPEAT	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	1/1:1353,0:1143.20:189.71	1/1:1095,0:775.61:189.71	1/1:2920,0:4194.58:189.71	1/1:815,0:754.44:189.71	1/1:2406,0:3368.51:189.71	1/1:1491,0:1694.97:189.71	1/1:1289,0:1175.70:189.71	1/1:1565,0:1517.80:189.71	1/1:1272,0:1385.77:189.71	1/1:1508,0:1995.25:189.71	1/1:1663,0:1927.56:189.71	1/1:942,1:1070.08:189.71	1/1:863,0:211.55:189.71	0/0:4,0:2.77:189.71	1/1:1203,0:851.18:189.71	1/1:920,0:373.36:189.71	1/1:1842,0:1778.80:189.71	1/1:529,0:254.13:189.71	1/1:1209,0:1047.96:189.71	1/1:1688,0:1684.65:189.71	1/1:1301,3:1162.83:189.71	1/1:1455,0:1672.63:189.71	1/1:2408,0:2797.73:189.71	1/1:1204,0:706.20:189.71	1/1:6056,2:12229.10:189.71	1/1:1073,0:1205.00:189.71	1/1:883,0:618.07:189.71	1/1:1471,0:1321.57:189.71	1/1:1584,0:1796.62:189.71	1/1:1382,0:1316.57:189.71	1/1:1602,0:1286.07:189.71	1/1:5277,6:7666.28:189.71	1/1:1583,1:1511.01:189.71	1/1:1655,0:1845.32:189.71	1/1:2984,3:2520.27:189.71	1/1:1919,0:2293.87:189.71	1/1:926,0:829.02:189.71	1/1:703,0:415.86:189.71	1/1:3673,0:5963.86:189.71	1/1:747,0:594.42:189.71	1/1:1711,1:1662.11:189.71	1/1:1034,0:1264.18:189.71	1/1:1728,1:1660.94:189.71	1/1:423,0:583.82:189.71	1/1:1659,2:1859.84:189.71	1/1:1101,1:922.22:189.71	1/1:1099,0:1007.76:189.71	1/1:1268,0:1561.95:189.71	1/1:2042,0:2731.34:189.71	1/1:1789,1:1753.33:189.71	1/1:1318,1:1311.16:189.71	1/1:1219,0:1043.57:189.71	1/1:1387,0:1339.14:189.71	1/1:775,0:361.40:189.71	1/1:1487,1:1337.95:189.71	1/1:1876,0:1826.47:189.71	1/1:1637,0:1418.33:189.71	1/1:1557,0:1459.99:189.71	1/1:621,0:332.06:189.71	1/1:1298,0:1101.18:189.71	1/1:1906,3:1960.76:189.71	1/1:532,0:245.12:189.71	1/1:763,0:606.55:189.71	1/1:1789,1:2256.40:189.71	1/1:1141,0:947.11:189.71	1/1:2217,0:2354.32:189.71	1/1:1097,1:879.23:189.71	1/1:1859,0:1938.67:189.71	1/1:1896,0:2775.03:189.71	1/1:979,0:894.53:189.71	1/1:1174,0:925.35:189.71	1/1:723,0:473.89:189.71	1/1:1015,0:779.60:189.71	1/1:1696,0:1656.75:189.71	1/1:633,0:268.61:189.71	1/1:2218,1:3047.44:189.71	1/1:1248,0:1202.33:189.71	0/0:3,0:2.08:189.71
1	564488	var_792260	T	A	.	PF_FAIL_REPEAT	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	1/1:1295,0:1037.63:187.71	1/1:1064,0:723.21:187.71	1/1:2846,0:4015.35:187.71	1/1:791,0:708.69:187.71	1/1:2360,0:3258.63:187.71	1/1:1466,0:1641.83:187.71	1/1:1228,1:1065.98:187.71	1/1:1532,0:1457.09:187.71	1/1:1214,0:1266.11:187.71	1/1:1431,0:1818.58:187.71	1/1:1651,0:1901.72:187.71	1/1:914,0:1006.22:187.71	1/1:848,0:193.07:187.71	0/0:2,0:1.39:187.71	1/1:1150,0:762.05:187.71	1/1:871,0:306.00:187.71	1/1:1805,1:1712.08:187.71	1/1:524,0:246.79:187.71	1/1:1177,0:988.76:187.71	1/1:1643,0:1595.45:187.71	1/1:1289,0:1126.25:187.71	1/1:1433,0:1612.93:187.71	1/1:2321,1:2617.02:187.71	1/1:1117,0:571.68:187.71	1/1:5969,0:11956.58:187.71	1/1:1020,0:1094.01:187.71	1/1:856,0:572.71:187.71	1/1:1431,0:1246.30:187.71	1/1:1567,0:1760.48:187.71	1/1:1355,0:1250.87:187.71	1/1:1533,1:1168.94:187.71	1/1:5232,7:7560.57:187.71	1/1:1537,0:1416.64:187.71	1/1:1591,0:1711.37:187.71	1/1:2943,1:2434.68:187.71	1/1:1891,0:2232.66:187.71	1/1:897,0:774.64:187.71	1/1:695,0:403.21:187.71	1/1:3505,0:5527.19:187.71	1/1:732,0:567.71:187.71	1/1:1683,0:1601.82:187.71	1/1:991,1:1174.40:187.71	1/1:1703,0:1606.74:187.71	1/1:413,0:560.22:187.71	1/1:1613,0:1753.38:187.71	1/1:1042,0:810.71:187.71	1/1:1092,0:994.38:187.71	1/1:1235,0:1488.83:187.71	1/1:1985,0:2599.01:187.71	1/1:1775,0:1720.22:187.71	1/1:1302,0:1274.26:187.71	1/1:1205,0:1017.70:187.71	1/1:1389,0:1343.07:187.71	1/1:741,0:312.47:187.71	1/1:1425,0:1216.45:187.71	1/1:1829,0:1734.41:187.71	1/1:1609,0:1366.38:187.71	1/1:1545,0:1436.81:187.71	1/1:597,0:300.26:187.71	1/1:1255,0:1013.66:187.71	1/1:1864,0:1861.62:187.71	1/1:515,0:220.67:187.71	1/1:739,1:568.82:187.71	1/1:1729,0:2116.83:187.71	1/1:1135,0:936.17:187.71	1/1:2159,0:2235.60:187.71	1/1:1022,0:742.16:187.71	1/1:1816,0:1851.42:187.71	1/1:1832,0:2618.59:187.71	1/1:962,0:862.21:187.71	1/1:1151,0:884.53:187.71	1/1:719,0:467.30:187.71	1/1:970,0:701.23:187.71	1/1:1637,0:1541.30:187.71	1/1:626,0:258.72:187.71	1/1:2183,0:2959.44:187.71	1/1:1188,0:1086.18:187.71	0/0:1,0:0.69:187.71
1	564489	var_2051429	T	G	.	PF_FAIL_REPEAT;MISMAPPED_UNPLACEABLE	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	0/0:0,0:0.00:0.78	0/0:0,0:0.00:0.78	0/0:1,0:0.69:0.78	0/0:0,0:0.00:0.78	0/0:0,0:0.00:0.78	0/0:0,0:0.00:0.78	0/0:0,0:0.00:0.78	0/0:1,0:0.70:0.78	0/0:0,0:0.00:0.78	0/0:0,0:0.00:0.78	0/0:0,0:0.00:0.78	0/0:2,0:1.39:0.78	0/0:0,0:0.00:0.78	0/0:0,0:0.00:0.78	0/0:0,0:0.00:0.78	0/0:0,0:0.00:0.78	0/0:0,0:0.00:0.78	1/1:0,1:0.69:0.78	0/0:2,0:1.39:0.78	0/0:0,0:0.00:0.78	0/0:1,0:0.69:0.78	0/0:0,0:0.00:0.78	0/0:2,0:1.38:0.78	0/0:0,0:0.00:0.78	0/0:0,0:0.00:0.78	0/0:0,0:0.00:0.78	0/0:0,0:0.00:0.78	0/0:1,0:0.69:0.78	0/0:0,0:0.00:0.78	0/0:0,0:0.00:0.78	0/0:0,0:0.00:0.78	0/1:7,8:23.95:0.78	0/0:0,0:0.00:0.78	0/0:1,0:0.69:0.78	0/1:1,3:3.39:0.78	0/0:0,0:0.00:0.78	0/0:0,0:0.00:0.78	0/0:0,0:0.00:0.78	0/1:1,1:4.20:0.78	0/0:0,0:0.00:0.78	0/0:3,0:2.08:0.78	0/0:1,0:0.69:0.78	0/0:0,0:0.00:0.78	0/0:0,0:0.00:0.78	0/0:0,0:0.00:0.78	0/0:2,0:1.39:0.78	0/0:0,0:0.00:0.78	0/0:0,0:0.00:0.78	0/0:0,0:0.00:0.78	0/0:0,0:0.00:0.78	1/1:0,1:0.70:0.78	0/0:0,0:0.00:0.78	0/0:0,0:0.00:0.78	1/1:0,1:0.69:0.78	0/0:0,0:0.00:0.78	0/0:0,0:0.00:0.78	0/0:0,0:0.00:0.78	0/0:0,0:0.00:0.78	0/0:0,0:0.00:0.78	1/1:0,1:0.69:0.78	0/1:1,1:4.15:0.78	0/0:0,0:0.00:0.78	0/0:0,0:0.00:0.78	0/0:0,0:0.00:0.78	0/0:0,0:0.00:0.78	0/0:0,0:0.00:0.78	0/0:0,0:0.00:0.78	0/0:0,0:0.00:0.78	0/0:0,0:0.00:0.78	0/0:0,0:0.00:0.78	0/0:0,0:0.00:0.78	0/0:0,0:0.00:0.78	0/0:0,0:0.00:0.78	0/0:0,0:0.00:0.78	0/0:0,0:0.00:0.78	0/0:0,0:0.00:0.78	1/1:0,1:0.70:0.78	0/0:0,0:0.00:0.78
1	564490	var_5101017	G	C	.	PF_FAIL_REPEAT;MISMAPPED_UNPLACEABLE	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	0/0:0,0:0.00:2.62	0/0:0,0:0.00:2.62	0/0:0,0:0.00:2.62	1/1:0,1:0.69:2.62	0/0:0,0:0.00:2.62	0/0:0,0:0.00:2.62	0/1:1,1:3.87:2.62	1/1:0,1:0.70:2.62	0/1:1,1:3.68:2.62	0/0:1,0:0.69:2.62	0/0:0,0:0.00:2.62	0/1:1,1:3.33:2.62	0/0:0,0:0.00:2.62	0/0:0,0:0.00:2.62	0/1:1,1:4.00:2.62	0/0:0,0:0.00:2.62	0/0:1,0:0.69:2.62	0/0:0,0:0.00:2.62	0/0:0,0:0.00:2.62	0/0:1,0:0.70:2.62	0/0:1,0:0.69:2.62	0/0:0,0:0.00:2.62	0/0:0,0:0.00:2.62	0/0:0,0:0.00:2.62	0/1:1,1:4.30:2.62	0/0:1,0:0.69:2.62	0/0:0,0:0.00:2.62	0/0:1,0:0.69:2.62	0/0:0,0:0.00:2.62	0/0:1,0:0.69:2.62	0/0:2,0:1.39:2.62	0/0:9,0:6.24:2.62	0/0:0,0:0.00:2.62	0/0:1,0:0.69:2.62	0/0:2,0:1.38:2.62	0/0:0,0:0.00:2.62	0/0:0,0:0.00:2.62	0/0:0,0:0.00:2.62	1/1:0,1:0.69:2.62	0/0:0,0:0.00:2.62	0/1:4,2:6.11:2.62	0/1:2,2:5.98:2.62	0/0:0,0:0.00:2.62	0/0:0,0:0.00:2.62	0/1:2,1:3.22:2.62	1/1:0,1:0.69:2.62	0/0:0,0:0.00:2.62	0/0:0,0:0.00:2.62	1/1:0,1:0.69:2.62	0/0:1,0:0.70:2.62	0/0:0,0:0.00:2.62	0/0:1,0:0.70:2.62	0/0:0,0:0.00:2.62	0/0:1,0:0.69:2.62	0/0:2,0:1.39:2.62	1/1:0,1:0.70:2.62	0/0:1,0:0.69:2.62	0/0:1,0:0.69:2.62	0/0:0,0:0.00:2.62	0/0:1,0:0.69:2.62	0/1:1,1:4.15:2.62	0/0:0,0:0.00:2.62	0/0:0,0:0.00:2.62	0/0:0,0:0.00:2.62	0/0:0,0:0.00:2.62	0/0:0,0:0.00:2.62	0/0:1,0:0.70:2.62	1/1:0,1:0.70:2.62	1/1:0,3:2.08:2.62	0/0:0,0:0.00:2.62	0/0:1,0:0.70:2.62	0/0:0,0:0.00:2.62	0/0:0,0:0.00:2.62	0/0:0,0:0.00:2.62	1/1:0,1:0.69:2.62	0/0:0,0:0.00:2.62	0/0:1,0:0.70:2.62	0/0:1,0:0.69:2.62
1	564495	var_5536178	C	G	.	PF_FAIL_REPEAT	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	1/1:1260,0:975.17:187.80	1/1:1030,0:666.76:187.80	1/1:2813,0:3936.03:187.80	1/1:775,0:678.60:187.80	1/1:2358,1:3259.26:187.80	1/1:1395,0:1493.25:187.80	1/1:1189,0:988.79:187.80	1/1:1476,0:1349.01:187.80	1/1:1185,0:1207.31:187.80	1/1:1381,0:1706.07:187.80	1/1:1637,0:1871.69:187.80	1/1:903,2:991.98:187.80	1/1:812,0:149.80:187.80	0/0:1,0:0.69:187.80	1/1:1153,0:767.02:187.80	1/1:848,0:275.33:187.80	1/1:1754,0:1608.16:187.80	1/1:509,0:225.04:187.80	1/1:1191,0:1014.56:187.80	1/1:1630,1:1575.35:187.80	1/1:1247,0:1048.38:187.80	1/1:1399,0:1541.15:187.80	1/1:2259,1:2486.21:187.80	1/1:1140,0:606.61:187.80	1/1:5801,1:11460.27:187.80	1/1:1022,0:1098.15:187.80	1/1:863,0:584.39:187.80	1/1:1386,0:1162.95:187.80	1/1:1541,0:1705.55:187.80	1/1:1345,0:1231.70:187.80	1/1:1492,1:1097.49:187.80	1/1:5200,7:7482.67:187.80	1/1:1481,0:1310.20:187.80	1/1:1544,0:1614.65:187.80	1/1:2850,2:2272.04:187.80	1/1:1870,1:2192.40:187.80	1/1:871,0:726.68:187.80	1/1:682,0:382.85:187.80	1/1:3318,1:5056.20:187.80	1/1:725,0:555.35:187.80	1/1:1677,0:1590.14:187.80	1/1:943,1:1071.12:187.80	1/1:1675,0:1552.62:187.80	1/1:420,0:576.71:187.80	1/1:1605,1:1742.03:187.80	1/1:1016,0:764.91:187.80	1/1:1081,0:973.46:187.80	1/1:1215,0:1444.95:187.80	1/1:1970,0:2564.46:187.80	1/1:1760,1:1696.30:187.80	1/1:1326,0:1321.89:187.80	1/1:1219,0:1043.57:187.80	1/1:1383,0:1331.30:187.80	1/1:721,0:284.41:187.80	1/1:1391,0:1153.94:187.80	1/1:1801,0:1680.14:187.80	1/1:1570,0:1294.83:187.80	1/1:1498,0:1346.96:187.80	1/1:615,0:327.47:187.80	1/1:1201,0:917.39:187.80	1/1:1823,0:1780.22:187.80	1/1:514,0:219.25:187.80	1/1:730,0:548.20:187.80	1/1:1685,0:2019.63:187.80	1/1:1142,0:948.94:187.80	1/1:2113,1:2148.20:187.80	1/1:1007,1:721.65:187.80	1/1:1800,0:1819.23:187.80	1/1:1765,3:2470.68:187.80	1/1:951,0:841.46:187.80	1/1:1093,0:783.64:187.80	1/1:736,0:495.47:187.80	1/1:953,0:672.15:187.80	1/1:1543,0:1361.78:187.80	1/1:620,1:255.34:187.80	1/1:2153,0:2889.03:187.80	1/1:1125,0:967.50:187.80	1/1:953,0:819.04:187.80
1	564497	var_5027495	G	T	.	PF_FAIL_REPEAT;MISMAPPED_UNPLACEABLE	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	1/1:0,1:0.70:1.30	0/0:0,0:0.00:1.30	0/0:0,0:0.00:1.30	0/0:0,0:0.00:1.30	0/0:1,0:0.70:1.30	0/0:0,0:0.00:1.30	0/0:1,0:0.70:1.30	0/0:0,0:0.00:1.30	0/0:1,0:0.70:1.30	0/0:1,0:0.69:1.30	0/0:1,0:0.69:1.30	1/1:0,2:1.39:1.30	0/0:0,0:0.00:1.30	0/0:1,0:0.69:1.30	0/0:0,0:0.00:1.30	0/0:0,0:0.00:1.30	0/0:0,0:0.00:1.30	0/0:0,0:0.00:1.30	0/0:0,0:0.00:1.30	0/0:0,0:0.00:1.30	0/0:0,0:0.00:1.30	0/0:1,0:0.69:1.30	1/1:0,1:0.69:1.30	0/0:1,0:0.69:1.30	0/1:1,1:4.30:1.30	0/0:0,0:0.00:1.30	0/0:0,0:0.00:1.30	0/0:0,0:0.00:1.30	0/0:0,0:0.00:1.30	0/0:1,0:0.69:1.30	0/0:1,0:0.70:1.30	0/0:0,0:0.00:1.30	0/0:0,0:0.00:1.30	0/0:0,0:0.00:1.30	0/1:2,3:8.17:1.30	0/0:0,0:0.00:1.30	0/0:0,0:0.00:1.30	0/0:0,0:0.00:1.30	0/0:0,0:0.00:1.30	0/0:0,0:0.00:1.30	0/0:0,0:0.00:1.30	0/0:0,0:0.00:1.30	0/0:0,0:0.00:1.30	0/0:0,0:0.00:1.30	0/0:1,0:0.69:1.30	0/0:1,0:0.69:1.30	0/0:0,0:0.00:1.30	0/0:0,0:0.00:1.30	0/0:0,0:0.00:1.30	0/0:0,0:0.00:1.30	0/0:0,0:0.00:1.30	0/0:0,0:0.00:1.30	0/1:1,1:3.89:1.30	0/0:0,0:0.00:1.30	0/0:0,0:0.00:1.30	0/0:0,0:0.00:1.30	0/0:0,0:0.00:1.30	0/0:0,0:0.00:1.30	0/0:0,0:0.00:1.30	0/0:0,0:0.00:1.30	0/0:0,0:0.00:1.30	0/0:0,0:0.00:1.30	0/0:0,0:0.00:1.30	0/0:0,0:0.00:1.30	0/0:1,0:0.69:1.30	0/0:0,0:0.00:1.30	0/0:0,0:0.00:1.30	0/0:0,0:0.00:1.30	0/0:0,0:0.00:1.30	0/0:0,0:0.00:1.30	0/0:0,0:0.00:1.30	0/0:0,0:0.00:1.30	1/1:0,2:1.38:1.30	0/0:1,0:0.69:1.30	0/0:0,0:0.00:1.30	0/0:0,0:0.00:1.30	0/0:0,0:0.00:1.30	0/0:0,0:0.00:1.30
1	564498	var_2443408	G	C	.	MISMAPPED_UNPLACEABLE	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	0/0:1,0:0.70:83.98	0/0:0,0:0.00:83.98	1/1:0,1:0.69:83.98	0/0:0,0:0.00:83.98	0/0:1,0:0.70:83.98	0/0:0,0:0.00:83.98	1/1:0,3:2.08:83.98	0/0:2,0:1.39:83.98	0/1:1,1:3.68:83.98	0/1:4,2:5.15:83.98	1/1:0,2:1.38:83.98	0/1:1,1:3.33:83.98	0/0:0,0:0.00:83.98	1/1:808,0:772.08:83.98	0/0:0,0:0.00:83.98	0/0:0,0:0.00:83.98	0/1:2,1:3.47:83.98	0/0:0,0:0.00:83.98	0/0:0,0:0.00:83.98	0/1:1,1:4.05:83.98	0/1:1,2:3.21:83.98	0/0:0,0:0.00:83.98	0/0:0,0:0.00:83.98	0/0:2,0:1.38:83.98	0/1:2,2:7.91:83.98	0/0:0,0:0.00:83.98	0/0:0,0:0.00:83.98	0/0:0,0:0.00:83.98	0/1:1,1:3.85:83.98	1/1:0,1:0.69:83.98	0/0:0,0:0.00:83.98	0/1:6,1:1.28:83.98	1/1:0,1:0.70:83.98	0/0:0,0:0.00:83.98	0/1:6,2:6.09:83.98	0/0:2,0:1.39:83.98	0/0:0,0:0.00:83.98	0/0:0,0:0.00:83.98	0/0:0,0:0.00:83.98	1/1:0,1:0.69:83.98	1/1:0,1:0.70:83.98	0/0:3,0:2.08:83.98	0/0:0,0:0.00:83.98	0/0:0,0:0.00:83.98	0/1:2,2:7.14:83.98	0/1:1,1:3.79:83.98	0/1:1,1:3.70:83.98	0/0:0,0:0.00:83.98	0/1:1,2:3.20:83.98	1/1:0,1:0.70:83.98	0/0:0,0:0.00:83.98	1/1:0,1:0.70:83.98	0/0:1,0:0.70:83.98	0/0:4,0:2.77:83.98	0/0:0,0:0.00:83.98	0/0:0,0:0.00:83.98	0/0:2,0:1.38:83.98	0/0:0,0:0.00:83.98	0/0:0,0:0.00:83.98	0/0:0,0:0.00:83.98	0/0:0,0:0.00:83.98	1/1:0,1:0.69:83.98	0/0:0,0:0.00:83.98	0/0:0,0:0.00:83.98	0/0:0,0:0.00:83.98	0/0:0,0:0.00:83.98	0/0:1,0:0.70:83.98	1/1:0,2:1.39:83.98	1/1:0,1:0.69:83.98	0/0:0,0:0.00:83.98	0/0:0,0:0.00:83.98	0/0:0,0:0.00:83.98	0/0:0,0:0.00:83.98	0/0:1,0:0.69:83.98	0/0:0,0:0.00:83.98	0/1:1,3:2.56:83.98	0/0:1,0:0.70:83.98	0/0:1,0:0.69:83.98
1	564499	var_2439902	G	A	.	PF_FAIL_REPEAT;MISMAPPED_UNPLACEABLE	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	0/0:0,0:0.00:1.55	0/0:1,0:0.70:1.55	0/0:1,0:0.69:1.55	0/0:1,0:0.69:1.55	0/0:0,0:0.00:1.55	0/0:0,0:0.00:1.55	0/0:2,0:1.39:1.55	0/0:1,0:0.70:1.55	0/0:1,0:0.70:1.55	0/0:2,0:1.38:1.55	0/0:1,0:0.69:1.55	0/1:1,3:1.95:1.55	0/0:0,0:0.00:1.55	0/0:0,0:0.00:1.55	0/0:0,0:0.00:1.55	0/0:0,0:0.00:1.55	0/0:0,0:0.00:1.55	0/0:0,0:0.00:1.55	1/1:0,2:1.39:1.55	0/0:0,0:0.00:1.55	0/0:0,0:0.00:1.55	0/1:1,1:3.76:1.55	1/1:0,1:0.69:1.55	0/0:0,0:0.00:1.55	0/0:0,0:0.00:1.55	0/0:0,0:0.00:1.55	0/0:1,0:0.69:1.55	1/1:0,1:0.69:1.55	0/0:1,0:0.69:1.55	1/1:0,1:0.69:1.55	0/0:0,0:0.00:1.55	0/1:4,1:2.66:1.55	0/0:0,0:0.00:1.55	0/0:2,0:1.38:1.55	0/1:1,3:3.39:1.55	1/1:0,1:0.69:1.55	0/0:0,0:0.00:1.55	0/0:0,0:0.00:1.55	0/0:0,0:0.00:1.55	0/0:0,0:0.00:1.55	0/0:0,0:0.00:1.55	0/0:1,0:0.69:1.55	0/0:0,0:0.00:1.55	0/0:0,0:0.00:1.55	0/0:0,0:0.00:1.55	0/0:3,0:2.08:1.55	0/0:0,0:0.00:1.55	0/0:1,0:0.70:1.55	0/0:0,0:0.00:1.55	0/0:0,0:0.00:1.55	0/0:0,0:0.00:1.55	0/0:0,0:0.00:1.55	0/0:0,0:0.00:1.55	0/1:1,1:3.81:1.55	0/0:0,0:0.00:1.55	0/0:0,0:0.00:1.55	0/0:0,0:0.00:1.55	0/0:0,0:0.00:1.55	0/1:1,1:3.51:1.55	0/0:0,0:0.00:1.55	1/1:0,3:2.08:1.55	0/0:0,0:0.00:1.55	0/0:0,0:0.00:1.55	0/0:0,0:0.00:1.55	1/1:0,1:0.69:1.55	0/0:1,0:0.69:1.55	0/0:1,0:0.70:1.55	0/0:1,0:0.70:1.55	0/0:2,0:1.39:1.55	0/0:0,0:0.00:1.55	0/0:0,0:0.00:1.55	0/0:0,0:0.00:1.55	0/0:0,0:0.00:1.55	0/0:0,0:0.00:1.55	0/0:0,0:0.00:1.55	0/0:0,0:0.00:1.55	0/0:1,0:0.70:1.55	0/1:2,1:2.92:1.55
1	564501	var_4658604	C	T	.	PF_FAIL_REPEAT	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	1/1:1265,1:989.40:188.63	1/1:1060,0:716.51:188.63	1/1:2851,1:4032.94:188.63	1/1:783,0:693.60:188.63	1/1:2328,0:3182.73:188.63	1/1:1439,0:1584.90:188.63	1/1:1211,0:1029.21:188.63	1/1:1478,1:1358.22:188.63	1/1:1190,1:1222.46:188.63	1/1:1446,0:1852.68:188.63	1/1:1679,0:1962.13:188.63	1/1:893,0:962.44:188.63	1/1:788,1:127.37:188.63	1/1:842,0:839.12:188.63	1/1:1215,0:871.69:188.63	1/1:829,1:255.89:188.63	1/1:1730,1:1567.93:188.63	1/1:529,0:254.13:188.63	1/1:1189,0:1010.86:188.63	1/1:1667,0:1642.87:188.63	1/1:1241,1:1042.65:188.63	1/1:1423,0:1591.73:188.63	1/1:2213,1:2390.26:188.63	1/1:1224,0:738.04:188.63	1/1:5661,1:11045.64:188.63	1/1:1051,0:1158.61:188.63	1/1:876,0:606.23:188.63	1/1:1366,0:1126.37:188.63	1/1:1596,0:1822.25:188.63	1/1:1324,0:1191.70:188.63	1/1:1460,0:1036.92:188.63	1/1:5183,7:7441.37:188.63	1/1:1467,1:1289.34:188.63	1/1:1551,2:1638.86:188.63	1/1:2848,3:2273.52:188.63	1/1:1925,0:2307.04:188.63	1/1:898,0:776.50:188.63	1/1:709,0:425.39:188.63	1/1:3210,0:4780.15:188.63	1/1:757,0:612.39:188.63	1/1:1666,1:1574.25:188.63	1/1:901,2:986.77:188.63	1/1:1666,0:1535.32:188.63	1/1:406,1:547.52:188.63	1/1:1619,0:1765.90:188.63	1/1:1013,0:759.67:188.63	1/1:1127,0:1061.68:188.63	1/1:1275,0:1577.56:188.63	1/1:1987,0:2603.63:188.63	1/1:1787,0:1743.86:188.63	1/1:1377,0:1424.54:188.63	1/1:1242,0:1086.40:188.63	1/1:1401,1:1371.96:188.63	1/1:761,0:341.07:188.63	1/1:1363,0:1103.07:188.63	1/1:1805,0:1687.86:188.63	1/1:1582,0:1316.75:188.63	1/1:1481,1:1320.22:188.63	1/1:634,0:356.76:188.63	1/1:1195,0:906.85:188.63	1/1:1817,1:1773.92:188.63	1/1:508,0:210.77:188.63	1/1:752,0:586.94:188.63	1/1:1643,0:1927.92:188.63	1/1:1163,0:987.51:188.63	1/1:2084,0:2084.41:188.63	1/1:1047,0:785.53:188.63	1/1:1860,0:1940.72:188.63	1/1:1800,0:2541.21:188.63	1/1:983,0:902.18:188.63	1/1:1106,1:811.27:188.63	1/1:744,0:508.85:188.63	1/1:942,0:653.50:188.63	1/1:1506,0:1292.67:188.63	1/1:624,0:255.91:188.63	1/1:2154,3:2905.59:188.63	1/1:1155,0:1023.58:188.63	1/1:964,0:839.51:188.63
1	564508	var_5801211	T	C	.	PF_FAIL_REPEAT;MISMAPPED_UNPLACEABLE	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	1/1:0,1:0.70:0.55	0/1:1,2:3.21:0.55	0/0:2,0:1.39:0.55	0/0:0,0:0.00:0.55	0/0:0,0:0.00:0.55	0/0:0,0:0.00:0.55	0/0:1,0:0.70:0.55	1/1:0,1:0.70:0.55	0/0:0,0:0.00:0.55	0/0:1,0:0.69:0.55	0/0:1,0:0.69:0.55	0/0:0,0:0.00:0.55	0/0:0,0:0.00:0.55	0/0:0,0:0.00:0.55	0/0:0,0:0.00:0.55	0/0:0,0:0.00:0.55	0/1:1,1:4.17:0.55	0/0:0,0:0.00:0.55	0/0:0,0:0.00:0.55	0/0:0,0:0.00:0.55	0/0:0,0:0.00:0.55	0/0:0,0:0.00:0.55	0/0:0,0:0.00:0.55	0/0:0,0:0.00:0.55	1/1:0,2:1.39:0.55	0/0:0,0:0.00:0.55	0/0:1,0:0.69:0.55	0/0:0,0:0.00:0.55	0/0:0,0:0.00:0.55	0/0:0,0:0.00:0.55	0/0:0,0:0.00:0.55	0/1:2,3:8.09:0.55	1/1:0,1:0.70:0.55	0/0:0,0:0.00:0.55	0/1:4,1:2.70:0.55	0/0:0,0:0.00:0.55	1/1:0,1:0.70:0.55	0/0:0,0:0.00:0.55	0/0:0,0:0.00:0.55	0/0:1,0:0.69:0.55	0/0:0,0:0.00:0.55	0/0:2,0:1.39:0.55	0/0:1,0:0.69:0.55	0/0:0,0:0.00:0.55	0/0:0,0:0.00:0.55	0/0:2,0:1.39:0.55	0/0:0,0:0.00:0.55	0/0:0,0:0.00:0.55	0/0:1,0:0.69:0.55	0/0:0,0:0.00:0.55	0/0:2,0:1.38:0.55	0/0:0,0:0.00:0.55	0/0:2,0:1.38:0.55	0/0:4,0:2.77:0.55	0/0:1,0:0.70:0.55	0/0:1,0:0.70:0.55	0/0:0,0:0.00:0.55	0/0:0,0:0.00:0.55	0/0:0,0:0.00:0.55	0/0:0,0:0.00:0.55	1/1:0,1:0.70:0.55	0/0:0,0:0.00:0.55	0/0:1,0:0.70:0.55	0/0:0,0:0.00:0.55	1/1:0,1:0.69:0.55	1/1:0,1:0.69:0.55	0/0:1,0:0.70:0.55	1/1:0,1:0.70:0.55	0/0:0,0:0.00:0.55	0/0:0,0:0.00:0.55	0/0:0,0:0.00:0.55	0/0:0,0:0.00:0.55	0/0:0,0:0.00:0.55	0/0:0,0:0.00:0.55	0/0:0,0:0.00:0.55	0/0:2,0:1.38:0.55	0/0:0,0:0.00:0.55	0/0:1,0:0.69:0.55
1	564509	var_4525665	G	C	.	PF_FAIL_REPEAT	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	1/1:1206,0:880.72:187.23	1/1:1019,2:658.64:187.23	1/1:2771,0:3835.65:187.23	1/1:755,0:641.44:187.23	1/1:2248,0:2994.89:187.23	1/1:1423,0:1551.42:187.23	1/1:1214,0:1034.75:187.23	1/1:1428,0:1258.05:187.23	1/1:1218,0:1274.27:187.23	1/1:1493,0:1960.52:187.23	1/1:1639,0:1875.97:187.23	1/1:883,0:941.76:187.23	1/1:726,0:53.06:187.23	1/1:872,2:908.21:187.23	1/1:1204,0:852.89:187.23	1/1:816,1:239.11:187.23	1/1:1670,1:1454.94:187.23	1/1:545,0:277.95:187.23	1/1:1143,0:926.80:187.23	1/1:1629,1:1567.95:187.23	1/1:1190,0:944.95:187.23	1/1:1409,0:1562.18:187.23	1/1:2158,2:2281.73:187.23	1/1:1263,0:801.04:187.23	1/1:5543,0:10693.18:187.23	1/1:1027,1:1113.38:187.23	1/1:850,0:562.74:187.23	1/1:1329,0:1059.48:187.23	1/1:1579,0:1785.97:187.23	1/1:1290,0:1127.63:187.23	1/1:1387,1:919.71:187.23	1/1:5187,0:7416.72:187.23	1/1:1422,0:1200.36:187.23	1/1:1565,1:1662.99:187.23	1/1:2849,1:2264.77:187.23	1/1:1905,0:2263.22:187.23	1/1:860,0:706.63:187.23	1/1:710,0:426.99:187.23	1/1:3073,0:4442.28:187.23	1/1:734,0:571.26:187.23	1/1:1627,0:1493.60:187.23	1/1:880,0:934.56:187.23	1/1:1593,1:1402.35:187.23	1/1:391,0:509.15:187.23	1/1:1603,0:1732.58:187.23	1/1:1040,2:816.83:187.23	1/1:1072,0:956.42:187.23	1/1:1244,0:1508.68:187.23	1/1:1914,1:2441.77:187.23	1/1:1764,2:1708.95:187.23	1/1:1361,0:1392.14:187.23	1/1:1230,0:1063.99:187.23	1/1:1370,0:1305.89:187.23	1/1:749,1:329.04:187.23	1/1:1301,0:992.51:187.23	1/1:1728,0:1540.70:187.23	1/1:1529,0:1220.68:187.23	1/1:1430,0:1219.56:187.23	1/1:635,0:358.32:187.23	1/1:1133,0:799.64:187.23	1/1:1770,0:1676.37:187.23	1/1:496,0:194.02:187.23	1/1:736,0:558.70:187.23	1/1:1615,0:1867.38:187.23	1/1:1147,0:958.09:187.23	1/1:1991,0:1900.69:187.23	1/1:1104,0:886.61:187.23	1/1:1803,0:1825.25:187.23	1/1:1782,0:2497.92:187.23	1/1:929,0:800.34:187.23	1/1:1062,0:730.97:187.23	1/1:723,1:478.82:187.23	1/1:943,0:655.18:187.23	1/1:1431,0:1155.40:187.23	1/1:612,0:239.17:187.23	1/1:2103,0:2772.63:187.23	1/1:1185,2:1090.10:187.23	1/1:924,1:770.68:187.23
1	564512	var_1088864	C	T	.	PF_FAIL_REPEAT	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	1/1:1356,0:1148.73:189.72	1/1:1098,0:780.72:189.72	1/1:2924,0:4204.33:189.72	1/1:811,0:746.76:189.72	1/1:2394,0:3339.77:189.72	1/1:1498,0:1709.92:189.72	1/1:1293,1:1188.60:189.72	1/1:1553,1:1503.53:189.72	1/1:1280,0:1402.49:189.72	1/1:1503,0:1983.66:189.72	1/1:1634,0:1865.27:189.72	1/1:947,3:1088.38:189.72	1/1:855,1:207.18:189.72	0/0:4,0:2.77:189.72	1/1:1197,0:840.97:189.72	1/1:921,0:374.75:189.72	1/1:1839,1:1778.47:189.72	1/1:521,0:242.40:189.72	1/1:1203,0:1036.79:189.72	1/1:1680,0:1668.70:189.72	1/1:1295,0:1137.49:189.72	1/1:1456,0:1661.93:189.72	1/1:2420,0:2823.68:189.72	1/1:1209,0:714.14:189.72	1/1:6029,0:12137.02:189.72	1/1:1059,0:1175.43:189.72	1/1:871,0:597.81:189.72	1/1:1452,1:1291.09:189.72	1/1:1573,1:1778.45:189.72	1/1:1387,0:1312.68:189.72	1/1:1613,0:1305.91:189.72	1/1:5285,11:7705.56:189.72	1/1:1575,0:1490.02:189.72	1/1:1663,0:1862.24:189.72	1/1:2984,4:2525.05:189.72	1/1:1906,1:2270.77:189.72	1/1:922,0:821.47:189.72	1/1:699,0:409.52:189.72	1/1:3690,0:6008.48:189.72	1/1:740,0:581.92:189.72	1/1:1704,1:1648.37:189.72	1/1:1036,2:1277.37:189.72	1/1:1716,0:1632.02:189.72	1/1:406,0:543.84:189.72	1/1:1644,0:1818.30:189.72	1/1:1106,0:926.20:189.72	1/1:1089,0:988.66:189.72	1/1:1271,0:1568.63:189.72	1/1:2039,0:2724.33:189.72	1/1:1782,0:1734.00:189.72	1/1:1295,1:1265.64:189.72	1/1:1193,0:995.67:189.72	1/1:1390,0:1345.03:189.72	1/1:757,0:335.31:189.72	1/1:1467,0:1294.81:189.72	1/1:1874,1:1828.09:189.72	1/1:1643,1:1435.06:189.72	1/1:1554,1:1459.60:189.72	1/1:618,0:332.06:189.72	1/1:1306,0:1106.71:189.72	1/1:1903,0:1939.89:189.72	1/1:531,0:243.66:189.72	1/1:759,0:599.40:189.72	1/1:1804,0:2285.08:189.72	1/1:1133,1:937.74:189.72	1/1:2222,0:2364.63:189.72	1/1:1093,0:866.86:189.72	1/1:1848,0:1916.26:189.72	1/1:1903,1:2797.35:189.72	1/1:984,0:904.09:189.72	1/1:1159,0:898.68:189.72	1/1:732,0:488.80:189.72	1/1:1020,0:788.44:189.72	1/1:1700,0:1664.66:189.72	1/1:635,0:271.45:189.72	1/1:2204,0:3008.97:189.72	1/1:1247,0:1200.37:189.72	0/0:3,0:2.08:189.72
1	564513	var_4620529	C	G	.	PF_FAIL_REPEAT	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	1/1:1158,1:804.16:187.95	1/1:1024,2:662.21:187.95	1/1:2734,0:3747.73:187.95	1/1:771,0:671.12:187.95	1/1:2191,1:2868.18:187.95	1/1:1432,1:1575.41:187.95	1/1:1252,0:1105.61:187.95	1/1:1458,0:1314.72:187.95	1/1:1281,0:1404.59:187.95	1/1:1527,1:2044.46:187.95	1/1:1653,1:1911.28:187.95	1/1:881,0:937.63:187.95	1/1:725,0:51.99:187.95	1/1:910,2:986.05:187.95	1/1:1218,0:876.84:187.95	1/1:797,0:209.56:187.95	1/1:1645,0:1402.94:187.95	1/1:557,1:300.92:187.95	1/1:1135,0:912.38:187.95	1/1:1656,0:1621.09:187.95	1/1:1175,0:918.19:187.95	1/1:1454,0:1657.65:187.95	1/1:2187,1:2336.45:187.95	1/1:1314,0:885.24:187.95	1/1:5462,0:10456.58:187.95	1/1:1034,0:1123.06:187.95	1/1:893,0:635.09:187.95	1/1:1337,0:1073.86:187.95	1/1:1587,0:1803.02:187.95	1/1:1313,0:1170.87:187.95	1/1:1365,0:877.87:187.95	1/1:5272,5:7649.71:187.95	1/1:1402,1:1169.09:187.95	1/1:1592,0:1713.45:187.95	1/1:2965,4:2490.19:187.95	1/1:1947,0:2355.48:187.95	1/1:882,0:746.88:187.95	1/1:707,0:422.21:187.95	1/1:3209,0:4777.65:187.95	1/1:749,1:602.83:187.95	1/1:1597,0:1436.42:187.95	1/1:900,1:980.66:187.95	1/1:1570,0:1353.91:187.95	1/1:380,0:484.08:187.95	1/1:1631,0:1791.01:187.95	1/1:1098,1:916.73:187.95	1/1:1092,0:994.38:187.95	1/1:1267,0:1559.71:187.95	1/1:1892,0:2386.65:187.95	1/1:1786,0:1741.89:187.95	1/1:1376,1:1427.71:187.95	1/1:1237,0:1077.04:187.95	1/1:1359,0:1284.47:187.95	1/1:804,1:409.51:187.95	1/1:1308,0:1004.85:187.95	1/1:1675,0:1441.40:187.95	1/1:1494,0:1158.23:187.95	1/1:1407,0:1177.20:187.95	1/1:651,0:383.46:187.95	1/1:1129,0:792.84:187.95	1/1:1767,1:1676.07:187.95	1/1:495,0:192.64:187.95	1/1:716,0:523.89:187.95	1/1:1616,0:1869.53:187.95	1/1:1160,1:987.19:187.95	1/1:1933,1:1793.94:187.95	1/1:1140,1:957.17:187.95	1/1:1827,1:1879.14:187.95	1/1:1806,0:2555.67:187.95	1/1:899,0:745.10:187.95	1/1:1096,1:794.07:187.95	1/1:722,1:477.18:187.95	1/1:1014,0:777.84:187.95	1/1:1442,0:1175.29:187.95	1/1:642,0:281.44:187.95	1/1:2088,0:2737.94:187.95	1/1:1283,0:1271.43:187.95	1/1:944,0:802.39:187.95
1	564519	var_5848877	C	G	.	PF_FAIL_REPEAT	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	1/1:1088,0:682.90:186.70	1/1:1046,0:693.19:186.70	1/1:2691,0:3646.20:186.70	1/1:784,0:695.48:186.70	1/1:2083,0:2616.59:186.70	1/1:1427,0:1559.78:186.70	1/1:1284,1:1171.42:186.70	1/1:1431,0:1263.70:186.70	1/1:1283,1:1413.83:186.70	1/1:1534,1:2060.81:186.70	1/1:1702,0:2012.12:186.70	1/1:872,0:919.14:186.70	1/1:687,1:18.00:186.70	1/1:950,1:1065.66:186.70	1/1:1262,0:953.16:186.70	1/1:715,1:116.18:186.70	1/1:1565,0:1256.88:186.70	1/1:557,0:296.12:186.70	1/1:1154,0:946.74:186.70	1/1:1670,0:1648.82:186.70	1/1:1168,0:905.77:186.70	1/1:1450,0:1649.11:186.70	1/1:2154,0:2262.97:186.70	1/1:1407,0:1043.82:186.70	1/1:5369,0:10186.42:186.70	1/1:1050,0:1156.51:186.70	1/1:913,0:669.45:186.70	1/1:1296,0:1000.68:186.70	1/1:1635,0:1906.15:186.70	1/1:1246,0:1046.07:186.70	1/1:1245,0:686.49:186.70	1/1:5375,2:7888.30:186.70	1/1:1389,0:1139.98:186.70	1/1:1603,0:1736.30:186.70	1/1:2805,2:2191.77:186.70	1/1:1960,0:2384.22:186.70	1/1:884,0:750.57:186.70	1/1:707,0:422.21:186.70	1/1:3165,0:4668.51:186.70	1/1:716,0:539.56:186.70	1/1:1585,0:1413.70:186.70	1/1:851,0:875.37:186.70	1/1:1557,0:1329.78:186.70	1/1:386,0:497.72:186.70	1/1:1654,0:1839.36:186.70	1/1:1144,0:996.53:186.70	1/1:1124,0:1055.87:186.70	1/1:1276,0:1579.80:186.70	1/1:1859,0:2312.39:186.70	1/1:1843,0:1855.25:186.70	1/1:1396,0:1463.28:186.70	1/1:1245,1:1097.26:186.70	1/1:1307,0:1184.49:186.70	1/1:861,0:491.70:186.70	1/1:1283,0:960.96:186.70	1/1:1637,0:1371.22:186.70	1/1:1453,0:1086.12:186.70	1/1:1357,0:1086.40:186.70	1/1:650,0:381.88:186.70	1/1:1054,0:667.97:186.70	1/1:1785,0:1705.60:186.70	1/1:499,0:198.18:186.70	1/1:717,1:530.47:186.70	1/1:1510,0:1644.72:186.70	1/1:1182,0:1022.73:186.70	1/1:1846,0:1622.98:186.70	1/1:1189,0:1042.76:186.70	1/1:1804,1:1832.75:186.70	1/1:1837,0:2630.73:186.70	1/1:922,0:787.36:186.70	1/1:1064,0:734.34:186.70	1/1:713,0:457.45:186.70	1/1:1030,0:806.18:186.70	1/1:1388,0:1078.45:186.70	1/1:659,0:306.02:186.70	1/1:2053,0:2657.41:186.70	1/1:1295,0:1295.34:186.70	1/1:909,0:738.44:186.70
1	564523	var_4418306	G	C	.	MISMAPPED_UNPLACEABLE	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	0/0:0,0:0.00:0.10	0/0:0,0:0.00:0.10	1/1:0,1:0.69:0.10	0/0:0,0:0.00:0.10	0/0:0,0:0.00:0.10	0/0:0,0:0.00:0.10	1/1:0,1:0.70:0.10	0/0:0,0:0.00:0.10	0/0:1,0:0.70:0.10	0/0:2,0:1.38:0.10	0/0:0,0:0.00:0.10	1/1:0,1:0.69:0.10	0/0:1,0:0.70:0.10	0/1:1,1:3.36:0.10	0/0:0,0:0.00:0.10	0/0:0,0:0.00:0.10	0/0:0,0:0.00:0.10	0/0:1,0:0.69:0.10	0/0:0,0:0.00:0.10	0/0:0,0:0.00:0.10	0/0:0,0:0.00:0.10	0/0:0,0:0.00:0.10	0/0:0,0:0.00:0.10	0/0:0,0:0.00:0.10	1/1:0,1:0.69:0.10	0/0:0,0:0.00:0.10	0/0:1,0:0.69:0.10	0/0:0,0:0.00:0.10	0/0:0,0:0.00:0.10	1/1:0,1:0.69:0.10	0/0:0,0:0.00:0.10	0/1:5,5:18.91:0.10	1/1:0,1:0.70:0.10	0/0:1,0:0.69:0.10	0/1:1,1:4.78:0.10	0/0:0,0:0.00:0.10	0/0:0,0:0.00:0.10	0/0:0,0:0.00:0.10	0/0:0,0:0.00:0.10	0/0:1,0:0.69:0.10	0/0:0,0:0.00:0.10	0/1:1,1:3.33:0.10	0/0:0,0:0.00:0.10	0/0:0,0:0.00:0.10	0/0:2,0:1.38:0.10	0/0:1,0:0.69:0.10	0/0:0,0:0.00:0.10	0/0:0,0:0.00:0.10	1/1:0,2:1.38:0.10	0/0:0,0:0.00:0.10	0/0:0,0:0.00:0.10	0/0:0,0:0.00:0.10	0/0:0,0:0.00:0.10	1/1:0,1:0.69:0.10	1/1:0,1:0.70:0.10	0/0:0,0:0.00:0.10	0/0:1,0:0.69:0.10	0/0:0,0:0.00:0.10	0/0:0,0:0.00:0.10	0/0:0,0:0.00:0.10	1/1:0,1:0.70:0.10	0/0:0,0:0.00:0.10	0/0:0,0:0.00:0.10	0/0:0,0:0.00:0.10	0/0:0,0:0.00:0.10	0/0:0,0:0.00:0.10	0/0:0,0:0.00:0.10	1/1:0,1:0.70:0.10	0/0:1,0:0.69:0.10	0/0:1,0:0.69:0.10	1/1:0,6:4.16:0.10	0/0:0,0:0.00:0.10	1/1:0,1:0.69:0.10	1/1:0,2:1.38:0.10	0/0:0,0:0.00:0.10	1/1:0,1:0.70:0.10	0/0:0,0:0.00:0.10	0/0:0,0:0.00:0.10
1	564525	var_1663578	T	G	.	PF_FAIL_REPEAT;MISMAPPED_UNPLACEABLE	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	0/1:1,1:3.98:4.66	0/0:0,0:0.00:4.66	0/0:1,0:0.69:4.66	0/0:0,0:0.00:4.66	0/0:0,0:0.00:4.66	0/0:1,0:0.69:4.66	0/0:0,0:0.00:4.66	0/0:0,0:0.00:4.66	1/1:0,1:0.70:4.66	0/1:3,3:9.05:4.66	0/0:0,0:0.00:4.66	0/0:1,0:0.69:4.66	0/0:0,0:0.00:4.66	0/0:0,0:0.00:4.66	1/1:0,1:0.69:4.66	0/0:1,0:0.69:4.66	0/0:0,0:0.00:4.66	0/0:0,0:0.00:4.66	0/0:1,0:0.69:4.66	0/0:0,0:0.00:4.66	0/0:0,0:0.00:4.66	0/0:0,0:0.00:4.66	0/0:0,0:0.00:4.66	0/0:0,0:0.00:4.66	0/1:1,3:2.92:4.66	0/0:0,0:0.00:4.66	0/0:0,0:0.00:4.66	0/0:1,0:0.69:4.66	0/1:1,2:3.16:4.66	0/0:0,0:0.00:4.66	1/1:0,2:1.39:4.66	0/1:8,7:23.95:4.66	0/0:0,0:0.00:4.66	0/0:1,0:0.69:4.66	0/1:5,4:15.24:4.66	0/0:0,0:0.00:4.66	0/0:0,0:0.00:4.66	0/0:0,0:0.00:4.66	0/0:0,0:0.00:4.66	0/0:0,0:0.00:4.66	0/0:1,0:0.70:4.66	0/1:2,1:2.65:4.66	1/1:0,1:0.69:4.66	0/0:0,0:0.00:4.66	0/0:0,0:0.00:4.66	0/0:1,0:0.69:4.66	0/0:1,0:0.69:4.66	0/0:0,0:0.00:4.66	0/0:1,0:0.69:4.66	0/0:2,0:1.38:4.66	1/1:0,1:0.70:4.66	0/0:1,0:0.70:4.66	0/0:0,0:0.00:4.66	1/1:0,1:0.69:4.66	0/0:1,0:0.70:4.66	0/0:0,0:0.00:4.66	0/0:0,0:0.00:4.66	0/0:0,0:0.00:4.66	0/0:0,0:0.00:4.66	0/0:0,0:0.00:4.66	1/1:0,1:0.70:4.66	0/0:0,0:0.00:4.66	0/0:0,0:0.00:4.66	0/0:0,0:0.00:4.66	0/0:0,0:0.00:4.66	0/0:0,0:0.00:4.66	0/0:0,0:0.00:4.66	0/0:1,0:0.70:4.66	0/0:0,0:0.00:4.66	0/0:0,0:0.00:4.66	0/0:0,0:0.00:4.66	0/0:0,0:0.00:4.66	0/0:0,0:0.00:4.66	1/1:0,1:0.69:4.66	0/0:0,0:0.00:4.66	0/0:0,0:0.00:4.66	0/0:0,0:0.00:4.66	0/0:0,0:0.00:4.66
1	564532	var_2592902	C	A	.	PF_FAIL_REPEAT;MISMAPPED_UNPLACEABLE	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	0/0:0,0:0.00:3.50	0/0:0,0:0.00:3.50	0/0:0,0:0.00:3.50	1/1:0,1:0.69:3.50	0/0:0,0:0.00:3.50	0/0:0,0:0.00:3.50	0/0:0,0:0.00:3.50	0/0:0,0:0.00:3.50	0/0:0,0:0.00:3.50	0/0:0,0:0.00:3.50	0/0:0,0:0.00:3.50	1/1:0,1:0.69:3.50	0/0:0,0:0.00:3.50	1/1:0,1:0.69:3.50	0/1:1,1:4.00:3.50	0/0:0,0:0.00:3.50	0/0:0,0:0.00:3.50	0/0:0,0:0.00:3.50	1/1:0,2:1.39:3.50	1/1:0,1:0.70:3.50	0/0:0,0:0.00:3.50	0/0:0,0:0.00:3.50	0/0:0,0:0.00:3.50	0/0:0,0:0.00:3.50	0/0:0,0:0.00:3.50	0/0:1,0:0.69:3.50	1/1:0,1:0.69:3.50	0/0:0,0:0.00:3.50	0/0:0,0:0.00:3.50	0/0:0,0:0.00:3.50	1/1:0,1:0.70:3.50	1/1:0,2:1.38:3.50	0/0:0,0:0.00:3.50	1/1:0,2:1.38:3.50	0/1:1,3:3.39:3.50	0/0:0,0:0.00:3.50	0/0:0,0:0.00:3.50	0/0:0,0:0.00:3.50	0/0:1,0:0.69:3.50	0/0:0,0:0.00:3.50	0/0:0,0:0.00:3.50	0/1:1,1:3.33:3.50	0/0:0,0:0.00:3.50	0/0:1,0:0.70:3.50	0/0:0,0:0.00:3.50	1/1:0,1:0.69:3.50	0/0:0,0:0.00:3.50	0/0:0,0:0.00:3.50	0/0:0,0:0.00:3.50	1/1:0,1:0.70:3.50	0/0:0,0:0.00:3.50	0/0:0,0:0.00:3.50	0/1:1,1:3.89:3.50	0/0:0,0:0.00:3.50	0/0:0,0:0.00:3.50	0/0:0,0:0.00:3.50	0/0:0,0:0.00:3.50	1/1:0,1:0.69:3.50	0/0:0,0:0.00:3.50	0/0:0,0:0.00:3.50	0/0:0,0:0.00:3.50	0/0:0,0:0.00:3.50	0/0:0,0:0.00:3.50	0/0:0,0:0.00:3.50	0/0:0,0:0.00:3.50	0/0:0,0:0.00:3.50	1/1:0,1:0.70:3.50	0/0:1,0:0.70:3.50	0/0:0,0:0.00:3.50	1/1:0,1:0.69:3.50	1/1:0,1:0.70:3.50	0/0:0,0:0.00:3.50	0/0:0,0:0.00:3.50	0/0:1,0:0.69:3.50	0/0:0,0:0.00:3.50	0/0:0,0:0.00:3.50	0/0:1,0:0.70:3.50	0/0:0,0:0.00:3.50
1	564535	var_4804387	A	C	.	PF_FAIL_REPEAT;MISMAPPED_UNPLACEABLE	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	0/0:0,0:0.00:12.40	0/0:0,0:0.00:12.40	0/1:3,1:2.77:12.40	0/0:0,0:0.00:12.40	0/0:0,0:0.00:12.40	0/0:2,0:1.39:12.40	0/0:0,0:0.00:12.40	0/0:1,0:0.70:12.40	0/0:1,0:0.70:12.40	0/0:1,0:0.69:12.40	0/0:1,0:0.69:12.40	0/1:4,1:1.26:12.40	0/0:0,0:0.00:12.40	1/1:0,1:0.69:12.40	0/0:0,0:0.00:12.40	0/0:0,0:0.00:12.40	0/0:0,0:0.00:12.40	0/0:0,0:0.00:12.40	0/0:0,0:0.00:12.40	1/1:0,1:0.70:12.40	0/0:1,0:0.69:12.40	0/0:0,0:0.00:12.40	0/0:0,0:0.00:12.40	0/0:0,0:0.00:12.40	0/0:1,0:0.69:12.40	1/1:0,1:0.69:12.40	0/0:1,0:0.69:12.40	0/0:3,0:2.08:12.40	0/0:0,0:0.00:12.40	1/1:0,1:0.69:12.40	0/0:1,0:0.70:12.40	0/1:17,3:2.72:12.40	0/0:1,0:0.70:12.40	0/0:1,0:0.69:12.40	0/1:5,4:15.24:12.40	0/0:2,0:1.39:12.40	0/0:1,0:0.70:12.40	0/0:0,0:0.00:12.40	0/0:2,0:1.38:12.40	0/0:1,0:0.69:12.40	0/1:1,1:4.10:12.40	0/1:2,2:5.98:12.40	0/0:0,0:0.00:12.40	0/0:1,0:0.70:12.40	0/0:0,0:0.00:12.40	0/0:2,0:1.39:12.40	1/1:0,1:0.69:12.40	0/0:0,0:0.00:12.40	0/1:8,2:2.95:12.40	0/0:1,0:0.70:12.40	0/0:0,0:0.00:12.40	0/1:1,1:3.87:12.40	0/0:0,0:0.00:12.40	0/0:0,0:0.00:12.40	0/0:1,0:0.70:12.40	0/0:2,0:1.38:12.40	0/0:1,0:0.69:12.40	0/0:0,0:0.00:12.40	0/0:0,0:0.00:12.40	0/0:0,0:0.00:12.40	0/0:2,0:1.38:12.40	0/0:0,0:0.00:12.40	0/0:0,0:0.00:12.40	0/0:0,0:0.00:12.40	0/0:0,0:0.00:12.40	0/1:1,1:4.26:12.40	0/0:1,0:0.70:12.40	0/0:0,0:0.00:12.40	0/0:0,0:0.00:12.40	0/0:1,0:0.69:12.40	0/0:1,0:0.70:12.40	1/1:0,1:0.69:12.40	0/0:1,0:0.69:12.40	0/0:0,0:0.00:12.40	0/0:0,0:0.00:12.40	0/0:1,0:0.70:12.40	0/0:1,0:0.70:12.40	0/0:0,0:0.00:12.40
1	564536	var_2687721	A	C	.	PF_FAIL_REPEAT	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	1/1:1216,0:898.03:188.25	1/1:1023,1:660.58:188.25	1/1:2784,0:3866.65:188.25	1/1:761,0:652.53:188.25	1/1:2281,2:3082.12:188.25	1/1:1426,1:1562.86:188.25	1/1:1191,0:992.44:188.25	1/1:1445,0:1290.09:188.25	1/1:1191,1:1224.48:188.25	1/1:1461,2:1896.24:188.25	1/1:1653,1:1911.28:188.25	1/1:865,1:909.54:188.25	1/1:742,0:70.33:188.25	1/1:847,0:849.09:188.25	1/1:1204,0:852.89:188.25	1/1:819,0:237.54:188.25	1/1:1661,0:1432.62:188.25	1/1:546,1:284.25:188.25	1/1:1161,0:959.48:188.25	1/1:1631,2:1582.05:188.25	1/1:1193,0:950.34:188.25	1/1:1419,0:1583.27:188.25	1/1:2147,1:2254.26:188.25	1/1:1250,0:779.90:188.25	1/1:5524,2:10648.26:188.25	1/1:1029,1:1117.52:188.25	1/1:845,1:559.55:188.25	1/1:1334,0:1068.45:188.25	1/1:1586,2:1810.67:188.25	1/1:1300,0:1146.39:188.25	1/1:1397,0:930.74:188.25	1/1:5182,7:7438.93:188.25	1/1:1416,0:1189.32:188.25	1/1:1550,2:1636.82:188.25	1/1:2870,2:2307.93:188.25	1/1:1916,3:2301.60:188.25	1/1:859,2:713.99:188.25	1/1:700,0:411.10:188.25	1/1:3078,1:4460.10:188.25	1/1:731,0:565.94:188.25	1/1:1638,0:1514.71:188.25	1/1:872,0:918.13:188.25	1/1:1603,0:1415.63:188.25	1/1:394,0:516.05:188.25	1/1:1606,0:1738.81:188.25	1/1:1027,1:789.39:188.25	1/1:1079,1:974.75:188.25	1/1:1245,2:1520.04:188.25	1/1:1922,0:2454.67:188.25	1/1:1777,0:1724.15:188.25	1/1:1361,1:1397.33:188.25	1/1:1235,0:1073.31:188.25	1/1:1371,1:1313.11:188.25	1/1:732,0:299.78:188.25	1/1:1293,0:978.46:188.25	1/1:1764,1:1614.65:188.25	1/1:1528,2:1229.26:188.25	1/1:1448,0:1252.97:188.25	1/1:640,1:371.03:188.25	1/1:1160,0:845.92:188.25	1/1:1768,0:1672.48:188.25	1/1:497,0:195.41:188.25	1/1:730,3:560.95:188.25	1/1:1628,0:1895.43:188.25	1/1:1136,1:943.21:188.25	1/1:2005,1:1933.72:188.25	1/1:1077,2:848.07:188.25	1/1:1801,1:1826.71:188.25	1/1:1757,1:2443.20:188.25	1/1:930,0:802.19:188.25	1/1:1044,1:706.08:188.25	1/1:724,0:475.54:188.25	1/1:933,1:643.49:188.25	1/1:1446,0:1182.54:188.25	1/1:612,0:239.17:188.25	1/1:2094,2:2761.78:188.25	1/1:1168,1:1053.31:188.25	1/1:946,1:811.09:188.25
1	564537	var_5071683	A	G	.	PF_FAIL_REPEAT	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	1/1:1213,1:898.20:187.79	1/1:1022,0:653.64:187.79	1/1:2784,0:3866.65:187.79	1/1:766,0:661.81:187.79	1/1:2269,0:3043.93:187.79	1/1:1419,0:1543.08:187.79	1/1:1204,0:1016.30:187.79	1/1:1430,1:1267.20:187.79	1/1:1205,0:1247.79:187.79	1/1:1476,1:1926.34:187.79	1/1:1655,0:1910.32:187.79	1/1:875,2:934.04:187.79	1/1:740,0:68.15:187.79	1/1:851,0:857.10:187.79	1/1:1201,0:847.77:187.79	1/1:826,0:246.57:187.79	1/1:1662,0:1434.48:187.79	1/1:543,0:274.94:187.79	1/1:1147,0:934.04:187.79	1/1:1626,0:1562.07:187.79	1/1:1191,0:946.75:187.79	1/1:1401,0:1545.35:187.79	1/1:2155,0:2265.01:187.79	1/1:1262,0:799.41:187.79	1/1:5532,0:10660.97:187.79	1/1:1032,1:1123.76:187.79	1/1:851,0:564.40:187.79	1/1:1334,0:1068.45:187.79	1/1:1579,0:1785.97:187.79	1/1:1289,0:1125.77:187.79	1/1:1395,0:927.41:187.79	1/1:5191,11:7476.32:187.79	1/1:1420,0:1196.67:187.79	1/1:1551,0:1628.96:187.79	1/1:2858,7:2309.37:187.79	1/1:1905,0:2263.22:187.79	1/1:858,0:702.99:187.79	1/1:697,0:406.37:187.79	1/1:3079,0:4456.95:187.79	1/1:730,0:564.17:187.79	1/1:1636,4:1529.60:187.79	1/1:879,1:937.22:187.79	1/1:1594,0:1398.72:187.79	1/1:394,0:516.05:187.79	1/1:1599,0:1724.27:187.79	1/1:1036,0:800.09:187.79	1/1:1069,0:950.76:187.79	1/1:1233,0:1484.43:187.79	1/1:1927,0:2466.05:187.79	1/1:1772,0:1714.32:187.79	1/1:1355,1:1385.23:187.79	1/1:1227,0:1058.41:187.79	1/1:1367,0:1300.03:187.79	1/1:751,0:326.71:187.79	1/1:1300,0:990.75:187.79	1/1:1739,1:1567.09:187.79	1/1:1537,0:1235.05:187.79	1/1:1438,0:1234.39:187.79	1/1:640,1:371.03:187.79	1/1:1148,0:825.27:187.79	1/1:1770,0:1676.37:187.79	1/1:492,0:188.49:187.79	1/1:733,0:553.45:187.79	1/1:1619,0:1875.99:187.79	1/1:1146,0:956.26:187.79	1/1:2000,1:1923.92:187.79	1/1:1088,0:857.93:187.79	1/1:1797,0:1813.20:187.79	1/1:1769,0:2466.78:187.79	1/1:926,0:794.77:187.79	1/1:1052,0:714.17:187.79	1/1:727,0:480.50:187.79	1/1:938,0:646.75:187.79	1/1:1442,0:1175.29:187.79	1/1:619,0:248.91:187.79	1/1:2105,6:2802.69:187.79	1/1:1182,1:1079.90:187.79	1/1:930,0:776.65:187.79
1	564538	var_2486595	C	A	.	PF_FAIL_REPEAT;MISMAPPED_UNPLACEABLE	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	0/0:0,0:0.00:3.03	0/0:0,0:0.00:3.03	0/0:0,0:0.00:3.03	0/0:0,0:0.00:3.03	0/0:0,0:0.00:3.03	0/0:0,0:0.00:3.03	0/0:1,0:0.70:3.03	0/0:0,0:0.00:3.03	0/1:1,1:3.68:3.03	0/0:1,0:0.69:3.03	0/0:0,0:0.00:3.03	0/0:1,0:0.69:3.03	0/0:0,0:0.00:3.03	0/0:0,0:0.00:3.03	0/0:0,0:0.00:3.03	0/0:0,0:0.00:3.03	0/0:0,0:0.00:3.03	0/0:0,0:0.00:3.03	0/0:0,0:0.00:3.03	0/0:0,0:0.00:3.03	0/0:0,0:0.00:3.03	0/0:0,0:0.00:3.03	0/0:0,0:0.00:3.03	0/0:0,0:0.00:3.03	0/0:1,0:0.69:3.03	0/0:0,0:0.00:3.03	0/0:0,0:0.00:3.03	0/0:0,0:0.00:3.03	1/1:0,1:0.69:3.03	1/1:0,1:0.69:3.03	0/0:0,0:0.00:3.03	0/1:3,2:8.09:3.03	0/0:0,0:0.00:3.03	0/0:0,0:0.00:3.03	0/1:2,4:7.48:3.03	0/0:0,0:0.00:3.03	0/0:1,0:0.70:3.03	0/0:0,0:0.00:3.03	0/0:0,0:0.00:3.03	0/0:0,0:0.00:3.03	0/0:0,0:0.00:3.03	0/1:1,1:3.33:3.03	0/0:1,0:0.69:3.03	0/0:0,0:0.00:3.03	1/1:0,1:0.69:3.03	0/0:1,0:0.69:3.03	0/0:1,0:0.69:3.03	0/0:0,0:0.00:3.03	0/0:0,0:0.00:3.03	0/0:0,0:0.00:3.03	1/1:0,1:0.70:3.03	0/0:0,0:0.00:3.03	0/0:0,0:0.00:3.03	0/0:1,0:0.69:3.03	0/0:0,0:0.00:3.03	0/0:0,0:0.00:3.03	1/1:0,2:1.38:3.03	0/0:0,0:0.00:3.03	0/0:0,0:0.00:3.03	0/0:0,0:0.00:3.03	0/0:0,0:0.00:3.03	0/0:0,0:0.00:3.03	1/1:0,1:0.70:3.03	0/0:0,0:0.00:3.03	0/0:0,0:0.00:3.03	0/0:0,0:0.00:3.03	1/1:0,1:0.70:3.03	0/0:0,0:0.00:3.03	0/0:0,0:0.00:3.03	1/1:0,1:0.69:3.03	0/0:0,0:0.00:3.03	1/1:0,1:0.69:3.03	0/0:2,0:1.38:3.03	0/0:0,0:0.00:3.03	0/0:0,0:0.00:3.03	0/0:0,0:0.00:3.03	0/0:1,0:0.70:3.03	0/0:1,0:0.69:3.03
1	564539	var_2258672	G	C	.	PF_FAIL_REPEAT;MISMAPPED_UNPLACEABLE	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	0/0:0,0:0.00:6.27	0/0:0,0:0.00:6.27	0/0:0,0:0.00:6.27	1/1:0,1:0.69:6.27	0/0:0,0:0.00:6.27	0/0:0,0:0.00:6.27	0/0:1,0:0.70:6.27	0/0:0,0:0.00:6.27	1/1:0,1:0.70:6.27	0/0:0,0:0.00:6.27	0/0:0,0:0.00:6.27	0/0:0,0:0.00:6.27	0/0:0,0:0.00:6.27	1/1:0,1:0.69:6.27	0/0:1,0:0.69:6.27	0/0:0,0:0.00:6.27	0/0:1,0:0.69:6.27	0/0:1,0:0.69:6.27	0/0:0,0:0.00:6.27	1/1:0,1:0.70:6.27	0/0:1,0:0.69:6.27	0/0:0,0:0.00:6.27	0/0:0,0:0.00:6.27	0/0:0,0:0.00:6.27	0/0:0,0:0.00:6.27	0/0:0,0:0.00:6.27	0/0:0,0:0.00:6.27	1/1:0,1:0.69:6.27	1/1:0,1:0.69:6.27	0/0:0,0:0.00:6.27	0/0:0,0:0.00:6.27	0/1:8,2:4.63:6.27	0/0:0,0:0.00:6.27	0/1:2,1:3.22:6.27	0/1:2,2:8.86:6.27	0/0:0,0:0.00:6.27	0/0:0,0:0.00:6.27	1/1:0,1:0.69:6.27	0/0:1,0:0.69:6.27	0/0:0,0:0.00:6.27	0/0:0,0:0.00:6.27	0/0:1,0:0.69:6.27	0/0:1,0:0.69:6.27	0/0:0,0:0.00:6.27	0/0:0,0:0.00:6.27	0/0:2,0:1.39:6.27	0/0:0,0:0.00:6.27	0/0:0,0:0.00:6.27	0/0:0,0:0.00:6.27	0/0:0,0:0.00:6.27	0/0:0,0:0.00:6.27	0/0:0,0:0.00:6.27	0/0:2,0:1.38:6.27	0/0:0,0:0.00:6.27	0/0:0,0:0.00:6.27	0/0:0,0:0.00:6.27	0/0:0,0:0.00:6.27	0/1:1,2:3.34:6.27	0/0:0,0:0.00:6.27	0/0:0,0:0.00:6.27	0/0:0,0:0.00:6.27	0/0:0,0:0.00:6.27	0/0:1,0:0.70:6.27	0/0:0,0:0.00:6.27	0/0:0,0:0.00:6.27	0/0:1,0:0.69:6.27	0/1:1,1:3.82:6.27	0/1:1,1:4.10:6.27	0/1:1,1:3.70:6.27	0/0:0,0:0.00:6.27	0/0:0,0:0.00:6.27	0/0:0,0:0.00:6.27	0/0:0,0:0.00:6.27	0/0:0,0:0.00:6.27	0/0:0,0:0.00:6.27	0/0:1,0:0.70:6.27	0/0:0,0:0.00:6.27	0/0:0,0:0.00:6.27
1	564541	var_4525666	A	G	.	PF_FAIL_REPEAT	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	1/1:1151,0:787.01:187.26	1/1:1016,0:643.86:187.26	1/1:2698,0:3662.68:187.26	1/1:750,0:632.23:187.26	1/1:2179,0:2835.17:187.26	1/1:1406,0:1516.04:187.26	1/1:1222,0:1049.57:187.26	1/1:1431,0:1263.70:187.26	1/1:1263,0:1367.03:187.26	1/1:1506,0:1990.61:187.26	1/1:1627,0:1850.31:187.26	1/1:870,0:915.05:187.26	1/1:719,0:45.62:187.26	1/1:896,0:948.39:187.26	1/1:1203,0:851.18:187.26	1/1:786,0:195.80:187.26	1/1:1642,0:1397.38:187.26	1/1:548,0:282.46:187.26	1/1:1125,0:894.42:187.26	1/1:1634,0:1577.76:187.26	1/1:1170,1:914.60:187.26	1/1:1425,0:1595.97:187.26	1/1:2160,1:2280.90:187.26	1/1:1298,1:864.12:187.26	1/1:5434,0:10375.07:187.26	1/1:1017,0:1087.80:187.26	1/1:873,0:601.18:187.26	1/1:1316,0:1036.22:187.26	1/1:1569,0:1764.72:187.26	1/1:1296,0:1138.88:187.26	1/1:1361,1:876.90:187.26	1/1:5178,10:7441.02:187.26	1/1:1408,0:1174.64:187.26	1/1:1561,0:1649.47:187.26	1/1:2925,4:2417.22:187.26	1/1:1926,0:2309.23:187.26	1/1:872,0:728.51:187.26	1/1:706,0:420.62:187.26	1/1:3160,1:4661.74:187.26	1/1:734,0:571.26:187.26	1/1:1594,0:1430.73:187.26	1/1:892,0:959.33:187.26	1/1:1560,1:1340.84:187.26	1/1:376,0:475.04:187.26	1/1:1601,1:1733.72:187.26	1/1:1064,0:849.98:187.26	1/1:1087,0:984.86:187.26	1/1:1246,0:1513.11:187.26	1/1:1882,0:2364.09:187.26	1/1:1756,2:1693.28:187.26	1/1:1357,0:1384.06:187.26	1/1:1225,0:1054.69:187.26	1/1:1352,2:1280.75:187.26	1/1:770,0:354.11:187.26	1/1:1292,0:976.70:187.26	1/1:1667,1:1426.55:187.26	1/1:1484,0:1140.54:187.26	1/1:1410,1:1188.11:187.26	1/1:643,0:370.84:187.26	1/1:1120,0:777.58:187.26	1/1:1751,0:1639.51:187.26	1/1:494,0:191.25:187.26	1/1:713,0:518.72:187.26	1/1:1599,0:1833.00:187.26	1/1:1134,0:934.35:187.26	1/1:1935,1:1797.79:187.26	1/1:1121,0:917.33:187.26	1/1:1797,0:1813.20:187.26	1/1:1772,0:2473.96:187.26	1/1:894,1:740.97:187.26	1/1:1081,0:763.14:187.26	1/1:713,0:457.45:187.26	1/1:980,0:718.46:187.26	1/1:1429,0:1151.79:187.26	1/1:634,0:270.03:187.26	1/1:2073,0:2703.35:187.26	1/1:1238,0:1182.77:187.26	1/1:920,1:763.39:187.26
1	564545	var_4620530	A	C	.	PF_FAIL_REPEAT	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	1/1:1142,1:777.29:188.39	1/1:1030,1:672.06:188.39	1/1:2694,1:3658.80:188.39	1/1:775,2:687.47:188.39	1/1:2171,0:2816.79:188.39	1/1:1427,2:1569.43:188.39	1/1:1245,0:1092.47:188.39	1/1:1436,0:1273.10:188.39	1/1:1272,1:1390.84:188.39	1/1:1521,1:2030.48:188.39	1/1:1650,0:1899.57:188.39	1/1:882,0:939.70:188.39	1/1:730,0:57.35:188.39	1/1:919,0:995.93:188.39	1/1:1215,0:871.69:188.39	1/1:783,0:192.07:188.39	1/1:1629,2:1383.83:188.39	1/1:552,0:288.51:188.39	1/1:1147,1:939.27:188.39	1/1:1658,1:1630.48:188.39	1/1:1171,0:911.08:188.39	1/1:1433,3:1626.56:188.39	1/1:2190,0:2337.01:188.39	1/1:1357,0:957.77:188.39	1/1:5404,0:10287.90:188.39	1/1:1033,1:1125.84:188.39	1/1:896,0:640.22:188.39	1/1:1320,2:1053.47:188.39	1/1:1595,0:1820.10:188.39	1/1:1291,0:1129.51:188.39	1/1:1351,0:854.99:188.39	1/1:5320,4:7762.79:188.39	1/1:1380,1:1129.07:188.39	1/1:1587,1:1708.39:188.39	1/1:2976,7:2523.51:188.39	1/1:1936,1:2336.59:188.39	1/1:864,0:713.89:188.39	1/1:703,0:415.86:188.39	1/1:3189,2:4738.44:188.39	1/1:738,0:578.36:188.39	1/1:1585,0:1413.70:188.39	1/1:898,1:976.50:188.39	1/1:1556,0:1327.94:188.39	1/1:373,0:468.29:188.39	1/1:1622,1:1777.47:188.39	1/1:1121,1:958.99:188.39	1/1:1102,0:1013.49:188.39	1/1:1257,2:1546.62:188.39	1/1:1900,0:2404.74:188.39	1/1:1786,1:1747.40:188.39	1/1:1367,1:1409.47:188.39	1/1:1244,3:1104.11:188.39	1/1:1333,0:1234.23:188.39	1/1:822,2:441.18:188.39	1/1:1297,0:985.47:188.39	1/1:1666,0:1424.69:188.39	1/1:1470,0:1115.88:188.39	1/1:1401,0:1166.21:188.39	1/1:650,0:381.88:188.39	1/1:1116,0:770.82:188.39	1/1:1760,1:1662.48:188.39	1/1:493,0:189.88:188.39	1/1:710,0:513.55:188.39	1/1:1604,0:1843.72:188.39	1/1:1168,0:996.75:188.39	1/1:1897,2:1730.00:188.39	1/1:1143,3:971.30:188.39	1/1:1831,0:1881.75:188.39	1/1:1820,0:2589.50:188.39	1/1:907,0:759.74:188.39	1/1:1079,1:765.03:188.39	1/1:721,1:475.53:188.39	1/1:1010,1:775.95:188.39	1/1:1419,0:1133.79:188.39	1/1:647,0:288.62:188.39	1/1:2086,1:2738.65:188.39	1/1:1289,0:1283.37:188.39	1/1:918,1:759.76:188.39
1	564547	var_300742	T	C	.	PF_FAIL_REPEAT;MISMAPPED_UNPLACEABLE	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	0/0:0,0:0.00:2.16	0/0:0,0:0.00:2.16	0/1:1,2:3.47:2.16	0/0:0,0:0.00:2.16	0/0:0,0:0.00:2.16	0/0:0,0:0.00:2.16	0/0:1,0:0.70:2.16	0/0:0,0:0.00:2.16	0/0:0,0:0.00:2.16	0/0:0,0:0.00:2.16	0/0:0,0:0.00:2.16	0/1:1,3:1.95:2.16	0/0:0,0:0.00:2.16	1/1:0,1:0.69:2.16	0/0:0,0:0.00:2.16	0/0:1,0:0.69:2.16	0/0:0,0:0.00:2.16	0/0:0,0:0.00:2.16	0/0:0,0:0.00:2.16	0/0:0,0:0.00:2.16	0/0:0,0:0.00:2.16	0/0:0,0:0.00:2.16	0/0:0,0:0.00:2.16	0/0:0,0:0.00:2.16	1/1:0,1:0.69:2.16	0/0:0,0:0.00:2.16	0/0:0,0:0.00:2.16	0/0:1,0:0.69:2.16	0/0:2,0:1.39:2.16	1/1:0,1:0.69:2.16	0/0:0,0:0.00:2.16	0/1:16,3:3.41:2.16	1/1:0,1:0.70:2.16	0/0:0,0:0.00:2.16	0/1:4,1:2.70:2.16	0/0:0,0:0.00:2.16	0/0:0,0:0.00:2.16	0/0:0,0:0.00:2.16	0/0:0,0:0.00:2.16	0/0:0,0:0.00:2.16	1/1:0,2:1.39:2.16	1/1:0,2:1.39:2.16	0/0:0,0:0.00:2.16	0/0:1,0:0.70:2.16	0/0:0,0:0.00:2.16	0/0:0,0:0.00:2.16	0/0:0,0:0.00:2.16	0/0:0,0:0.00:2.16	0/1:1,2:3.20:2.16	0/0:0,0:0.00:2.16	0/0:0,0:0.00:2.16	0/0:0,0:0.00:2.16	0/0:0,0:0.00:2.16	0/0:0,0:0.00:2.16	0/0:0,0:0.00:2.16	0/0:0,0:0.00:2.16	0/0:0,0:0.00:2.16	0/0:0,0:0.00:2.16	1/1:0,1:0.69:2.16	0/0:1,0:0.69:2.16	0/0:2,0:1.38:2.16	0/0:0,0:0.00:2.16	0/0:0,0:0.00:2.16	0/0:0,0:0.00:2.16	0/0:0,0:0.00:2.16	0/0:0,0:0.00:2.16	1/1:0,1:0.70:2.16	0/0:0,0:0.00:2.16	1/1:0,1:0.69:2.16	0/0:0,0:0.00:2.16	0/0:0,0:0.00:2.16	1/1:0,1:0.69:2.16	1/1:0,1:0.69:2.16	0/0:0,0:0.00:2.16	0/0:0,0:0.00:2.16	1/1:0,1:0.70:2.16	1/1:0,1:0.70:2.16	0/0:0,0:0.00:2.16
1	564547	var_4141911	C	G	.	MISMAPPED_UNPLACEABLE	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	0/0:0,0:0.00:1.66	0/0:0,0:0.00:1.66	0/0:0,0:0.00:1.66	0/0:0,0:0.00:1.66	0/0:0,0:0.00:1.66	0/0:0,0:0.00:1.66	1/1:0,1:0.70:1.66	1/1:0,1:0.70:1.66	0/0:1,0:0.70:1.66	0/0:1,0:0.69:1.66	1/1:0,1:0.69:1.66	0/1:4,3:7.52:1.66	0/0:0,0:0.00:1.66	0/0:4,0:2.77:1.66	0/0:0,0:0.00:1.66	0/0:0,0:0.00:1.66	1/1:0,1:0.69:1.66	0/0:0,0:0.00:1.66	0/0:0,0:0.00:1.66	0/0:0,0:0.00:1.66	0/0:0,0:0.00:1.66	0/0:0,0:0.00:1.66	0/0:0,0:0.00:1.66	0/0:0,0:0.00:1.66	0/0:1,0:0.69:1.66	0/0:0,0:0.00:1.66	0/0:0,0:0.00:1.66	1/1:0,1:0.69:1.66	0/0:0,0:0.00:1.66	0/0:0,0:0.00:1.66	0/0:0,0:0.00:1.66	0/1:2,12:1.85:1.66	0/0:0,0:0.00:1.66	1/1:0,1:0.69:1.66	0/1:4,2:7.48:1.66	0/0:0,0:0.00:1.66	1/1:0,1:0.70:1.66	0/0:0,0:0.00:1.66	0/0:0,0:0.00:1.66	0/0:0,0:0.00:1.66	0/0:0,0:0.00:1.66	0/1:1,1:3.33:1.66	0/0:0,0:0.00:1.66	0/0:0,0:0.00:1.66	1/1:0,1:0.69:1.66	0/0:0,0:0.00:1.66	0/0:0,0:0.00:1.66	0/0:1,0:0.70:1.66	1/1:0,1:0.69:1.66	0/0:0,0:0.00:1.66	0/0:0,0:0.00:1.66	0/0:0,0:0.00:1.66	0/0:2,0:1.38:1.66	0/0:2,0:1.38:1.66	0/0:0,0:0.00:1.66	0/0:2,0:1.38:1.66	0/0:0,0:0.00:1.66	0/0:1,0:0.69:1.66	0/0:1,0:0.69:1.66	1/1:0,1:0.69:1.66	0/0:0,0:0.00:1.66	0/0:0,0:0.00:1.66	0/0:0,0:0.00:1.66	1/1:0,1:0.69:1.66	0/0:0,0:0.00:1.66	1/1:0,1:0.69:1.66	0/0:4,0:2.78:1.66	1/1:0,1:0.70:1.66	0/0:2,0:1.39:1.66	0/0:0,0:0.00:1.66	1/1:0,2:1.38:1.66	0/0:1,0:0.69:1.66	0/0:0,0:0.00:1.66	0/0:0,0:0.00:1.66	0/0:1,0:0.69:1.66	0/0:0,0:0.00:1.66	0/0:1,0:0.70:1.66	0/0:0,0:0.00:1.66
1	564548	var_3100178	T	C	.	PF_FAIL_REPEAT	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	1/1:1099,0:700.82:187.48	1/1:1040,0:683.25:187.48	1/1:2693,0:3650.91:187.48	1/1:776,0:680.46:187.48	1/1:2097,0:2648.20:187.48	1/1:1422,0:1549.33:187.48	1/1:1283,0:1164.27:187.48	1/1:1420,0:1243.05:187.48	1/1:1262,1:1370.01:187.48	1/1:1514,3:2022.39:187.48	1/1:1696,0:1999.05:187.48	1/1:873,1:925.91:187.48	1/1:696,0:21.65:187.48	1/1:943,0:1046.15:187.48	1/1:1245,0:923.48:187.48	1/1:729,0:126.98:187.48	1/1:1577,0:1278.54:187.48	1/1:559,0:299.18:187.48	1/1:1148,0:935.86:187.48	1/1:1660,0:1629.00:187.48	1/1:1173,0:914.64:187.48	1/1:1445,0:1638.44:187.48	1/1:2158,0:2271.17:187.48	1/1:1402,0:1035.14:187.48	1/1:5375,1:10209.48:187.48	1/1:1045,0:1146.03:187.48	1/1:909,0:662.54:187.48	1/1:1301,0:1009.53:187.48	1/1:1619,0:1871.61:187.48	1/1:1255,0:1062.63:187.48	1/1:1268,0:722.31:187.48	1/1:5367,3:7873.61:187.48	1/1:1383,1:1134.51:187.48	1/1:1588,0:1705.16:187.48	1/1:2834,4:2253.25:187.48	1/1:1957,0:2377.58:187.48	1/1:887,0:756.11:187.48	1/1:702,1:419.24:187.48	1/1:3150,0:4631.45:187.48	1/1:733,0:569.48:187.48	1/1:1595,1:1438.10:187.48	1/1:859,0:891.59:187.48	1/1:1556,0:1327.94:187.48	1/1:387,0:499.99:187.48	1/1:1656,1:1848.89:187.48	1/1:1139,0:987.20:187.48	1/1:1127,0:1061.68:187.48	1/1:1270,1:1571.32:187.48	1/1:1871,1:2344.61:187.48	1/1:1843,0:1855.25:187.48	1/1:1390,0:1451.02:187.48	1/1:1243,0:1088.26:187.48	1/1:1321,0:1211.21:187.48	1/1:850,0:474.54:187.48	1/1:1270,0:938.33:187.48	1/1:1640,0:1376.73:187.48	1/1:1464,1:1110.89:187.48	1/1:1370,0:1109.84:187.48	1/1:657,0:392.99:187.48	1/1:1075,1:707.74:187.48	1/1:1778,1:1697.47:187.48	1/1:506,0:207.96:187.48	1/1:709,1:516.69:187.48	1/1:1554,0:1737.16:187.48	1/1:1191,1:1044.73:187.48	1/1:1857,1:1649.30:187.48	1/1:1168,1:1008.80:187.48	1/1:1825,0:1869.61:187.48	1/1:1826,0:2604.03:187.48	1/1:928,0:798.48:187.48	1/1:1060,0:727.60:187.48	1/1:710,1:457.49:187.48	1/1:1018,0:784.90:187.48	1/1:1401,0:1101.57:187.48	1/1:651,0:294.40:187.48	1/1:2058,1:2674.20:187.48	1/1:1284,0:1273.41:187.48	1/1:919,0:756.57:187.48
1	564549	var_2013845	T	G	.	PF_FAIL_REPEAT	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	1/1:894,1:391.62:181.47	1/1:885,0:439.16:181.47	1/1:2175,0:2484.84:181.47	1/1:696,1:539.75:181.47	1/1:1779,0:1954.69:181.47	1/1:1308,1:1321.32:181.47	1/1:1298,1:1198.17:181.47	1/1:1113,1:709.43:181.47	1/1:1343,0:1535.85:181.47	1/1:1534,1:2060.81:181.47	1/1:1426,2:1444.02:181.47	1/1:764,2:713.51:181.47	0/0:537,0:121.74:181.47	1/1:910,0:977.26:181.47	1/1:1276,0:977.76:181.47	0/0:505,0:96.32:181.47	1/1:1203,0:650.61:181.47	1/1:497,0:207.96:181.47	1/1:978,0:641.11:181.47	1/1:1403,0:1141.44:181.47	1/1:908,0:476.37:181.47	1/1:1175,0:1090.01:181.47	1/1:2019,1:1996.36:181.47	1/1:1400,1:1037.18:181.47	1/1:4568,0:7929.37:181.47	1/1:1016,0:1085.74:181.47	1/1:794,1:476.89:181.47	1/1:1136,1:733.34:181.47	1/1:1505,0:1630.23:181.47	1/1:967,0:567.58:181.47	1/1:889,0:191.90:181.47	1/1:5354,7:7859.37:181.47	1/1:1259,2:920.09:181.47	1/1:1679,0:1896.20:181.47	1/1:2298,2:1340.36:181.47	1/1:1791,0:2017.51:181.47	1/1:759,0:529.26:181.47	1/1:673,0:368.91:181.47	1/1:2607,1:3346.16:181.47	1/1:638,0:407.59:181.47	1/1:1366,1:1021.28:181.47	1/1:705,0:593.14:181.47	1/1:1200,0:713.28:181.47	1/1:316,0:344.83:181.47	1/1:1378,1:1286.85:181.47	1/1:1197,1:1101.90:181.47	1/1:994,0:812.03:181.47	1/1:1171,0:1349.57:181.47	1/1:1551,0:1649.01:181.47	1/1:1655,1:1493.87:181.47	1/1:1244,0:1160.98:181.47	1/1:1079,1:797.79:181.47	1/1:1094,1:802.75:181.47	1/1:850,1:479.72:181.47	1/1:1075,0:615.66:181.47	1/1:1290,1:779.68:181.47	1/1:1245,0:738.87:181.47	1/1:1165,0:755.53:181.47	1/1:591,0:291.31:181.47	1/1:714,0:175.64:181.47	1/1:1550,0:1262.79:181.47	0/0:3,0:2.08:181.47	1/1:722,1:539.13:181.47	1/1:1251,0:1127.91:181.47	1/1:1089,0:853.33:181.47	1/1:1395,1:842.34:181.47	1/1:1186,0:1037.13:181.47	1/1:1630,1:1491.58:181.47	1/1:1814,0:2574.99:181.47	1/1:859,0:673.03:181.47	1/1:956,1:563.15:181.47	1/1:689,0:418.59:181.47	1/1:1042,0:827.59:181.47	1/1:1143,0:666.82:181.47	1/1:560,0:169.43:181.47	1/1:1726,2:1945.33:181.47	1/1:1305,1:1320.52:181.47	1/1:775,0:506.54:181.47
1	564551	var_5848878	T	C	.	PF_FAIL_REPEAT	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	1/1:1071,0:655.43:187.68	1/1:1047,0:694.84:187.68	1/1:2653,0:3557.04:187.68	1/1:772,0:672.98:187.68	1/1:2064,0:2573.85:187.68	1/1:1415,0:1534.74:187.68	1/1:1286,0:1169.98:187.68	1/1:1412,0:1228.10:187.68	1/1:1284,0:1410.86:187.68	1/1:1579,0:2161.64:187.68	1/1:1693,0:1992.52:187.68	1/1:874,0:923.25:187.68	1/1:684,0:9.45:187.68	1/1:957,1:1080.47:187.68	1/1:1283,0:990.13:187.68	1/1:700,0:93.66:187.68	1/1:1556,1:1246.26:187.68	1/1:564,0:306.84:187.68	1/1:1165,0:966.78:187.68	1/1:1643,1:1600.88:187.68	1/1:1157,0:886.32:187.68	1/1:1423,0:1591.73:187.68	1/1:2141,1:2241.99:187.68	1/1:1421,0:1068.24:187.68	1/1:5379,0:10215.38:187.68	1/1:1050,0:1156.51:187.68	1/1:905,0:655.65:187.68	1/1:1286,0:983.03:187.68	1/1:1621,0:1875.92:187.68	1/1:1236,0:1027.75:187.68	1/1:1217,0:643.46:187.68	1/1:5368,1:7865.61:187.68	1/1:1381,0:1125.46:187.68	1/1:1642,0:1817.91:187.68	1/1:2789,3:2168.47:187.68	1/1:1946,0:2353.28:187.68	1/1:888,0:757.95:187.68	1/1:703,0:415.86:187.68	1/1:3166,1:4676.57:187.68	1/1:704,0:518.68:187.68	1/1:1576,0:1396.72:187.68	1/1:845,1:867.96:187.68	1/1:1521,0:1263.56:187.68	1/1:390,0:506.86:187.68	1/1:1639,0:1807.79:187.68	1/1:1185,0:1073.84:187.68	1/1:1111,0:1030.77:187.68	1/1:1281,1:1595.90:187.68	1/1:1843,0:2276.59:187.68	1/1:1824,26:1899.39:187.68	1/1:1366,0:1402.24:187.68	1/1:1232,0:1067.72:187.68	1/1:1300,0:1171.19:187.68	1/1:868,0:502.69:187.68	1/1:1279,0:953.99:187.68	1/1:1605,0:1312.81:187.68	1/1:1441,0:1065.23:187.68	1/1:1371,0:1111.64:187.68	1/1:639,0:364.57:187.68	1/1:1047,1:661.92:187.68	1/1:1784,0:1703.64:187.68	1/1:491,0:187.12:187.68	1/1:712,0:516.99:187.68	1/1:1525,0:1676.09:187.68	1/1:1173,1:1011.23:187.68	1/1:1820,0:1574.36:187.68	1/1:1192,1:1053.58:187.68	1/1:1798,0:1815.21:187.68	1/1:1850,0:2662.37:187.68	1/1:917,0:778.13:187.68	1/1:1061,0:729.28:187.68	1/1:715,0:460.73:187.68	1/1:1045,0:832.97:187.68	1/1:1371,0:1048.40:187.68	1/1:666,0:316.26:187.68	1/1:2041,1:2635.27:187.68	1/1:1319,0:1343.49:187.68	1/1:908,0:736.62:187.68
1	564553	var_1686748	G	C	.	PF_FAIL_REPEAT;MISMAPPED_UNPLACEABLE	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	0/0:0,0:0.00:2.23	0/0:0,0:0.00:2.23	0/1:1,1:4.15:2.23	0/0:0,0:0.00:2.23	0/0:0,0:0.00:2.23	0/0:0,0:0.00:2.23	0/0:0,0:0.00:2.23	1/1:0,1:0.70:2.23	1/1:0,1:0.70:2.23	0/0:1,0:0.69:2.23	0/0:0,0:0.00:2.23	0/0:0,0:0.00:2.23	0/0:0,0:0.00:2.23	1/1:0,1:0.69:2.23	0/0:0,0:0.00:2.23	0/0:0,0:0.00:2.23	0/0:0,0:0.00:2.23	0/0:0,0:0.00:2.23	0/0:0,0:0.00:2.23	0/0:0,0:0.00:2.23	0/0:0,0:0.00:2.23	0/0:0,0:0.00:2.23	0/0:0,0:0.00:2.23	0/0:0,0:0.00:2.23	1/1:0,1:0.69:2.23	0/0:0,0:0.00:2.23	0/0:0,0:0.00:2.23	1/1:0,2:1.38:2.23	0/0:0,0:0.00:2.23	0/0:0,0:0.00:2.23	0/0:0,0:0.00:2.23	0/0:6,0:4.16:2.23	0/0:0,0:0.00:2.23	0/1:1,1:3.91:2.23	0/1:2,1:4.08:2.23	0/0:0,0:0.00:2.23	0/0:0,0:0.00:2.23	0/0:0,0:0.00:2.23	0/0:1,0:0.69:2.23	0/0:0,0:0.00:2.23	0/0:0,0:0.00:2.23	1/1:0,1:0.69:2.23	0/0:0,0:0.00:2.23	0/0:0,0:0.00:2.23	0/0:0,0:0.00:2.23	0/0:1,0:0.69:2.23	0/0:0,0:0.00:2.23	0/0:0,0:0.00:2.23	0/1:1,1:3.90:2.23	0/0:0,0:0.00:2.23	0/0:0,0:0.00:2.23	0/0:0,0:0.00:2.23	0/0:0,0:0.00:2.23	0/0:1,0:0.69:2.23	0/0:0,0:0.00:2.23	0/1:1,1:4.18:2.23	0/0:0,0:0.00:2.23	0/0:0,0:0.00:2.23	0/0:0,0:0.00:2.23	0/0:0,0:0.00:2.23	0/0:0,0:0.00:2.23	0/0:0,0:0.00:2.23	0/0:0,0:0.00:2.23	0/0:0,0:0.00:2.23	0/0:0,0:0.00:2.23	0/0:0,0:0.00:2.23	0/0:0,0:0.00:2.23	0/0:0,0:0.00:2.23	0/0:1,0:0.69:2.23	0/0:0,0:0.00:2.23	0/0:0,0:0.00:2.23	0/0:0,0:0.00:2.23	0/0:1,0:0.69:2.23	0/0:0,0:0.00:2.23	0/0:0,0:0.00:2.23	0/1:1,2:3.25:2.23	0/0:0,0:0.00:2.23	1/1:0,1:0.69:2.23
1	564556	var_1857856	C	G	.	PF_FAIL_REPEAT;MISMAPPED_UNPLACEABLE	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	0/0:0,0:0.00:2.81	0/0:0,0:0.00:2.81	0/0:0,0:0.00:2.81	0/0:0,0:0.00:2.81	0/0:1,0:0.70:2.81	0/0:0,0:0.00:2.81	0/0:1,0:0.70:2.81	1/1:0,1:0.70:2.81	0/0:0,0:0.00:2.81	0/0:0,0:0.00:2.81	0/0:1,0:0.69:2.81	0/1:2,2:5.97:2.81	0/0:0,0:0.00:2.81	1/1:0,1:0.69:2.81	0/0:0,0:0.00:2.81	0/0:0,0:0.00:2.81	0/0:1,0:0.69:2.81	0/0:0,0:0.00:2.81	0/0:0,0:0.00:2.81	0/0:0,0:0.00:2.81	0/0:0,0:0.00:2.81	0/0:0,0:0.00:2.81	0/0:0,0:0.00:2.81	0/0:0,0:0.00:2.81	0/0:0,0:0.00:2.81	1/1:0,1:0.69:2.81	0/0:0,0:0.00:2.81	0/0:0,0:0.00:2.81	0/0:0,0:0.00:2.81	0/0:0,0:0.00:2.81	0/0:1,0:0.70:2.81	0/1:2,13:1.16:2.81	0/0:0,0:0.00:2.81	0/0:0,0:0.00:2.81	0/1:3,4:11.85:2.81	0/0:0,0:0.00:2.81	0/0:1,0:0.70:2.81	0/0:0,0:0.00:2.81	0/0:0,0:0.00:2.81	0/0:2,0:1.38:2.81	0/0:1,0:0.70:2.81	0/0:1,0:0.69:2.81	1/1:0,2:1.39:2.81	0/0:0,0:0.00:2.81	0/0:0,0:0.00:2.81	0/0:0,0:0.00:2.81	0/0:0,0:0.00:2.81	0/0:0,0:0.00:2.81	1/1:0,2:1.38:2.81	0/0:0,0:0.00:2.81	0/0:1,0:0.70:2.81	0/0:0,0:0.00:2.81	0/0:0,0:0.00:2.81	1/1:0,2:1.38:2.81	0/0:0,0:0.00:2.81	1/1:0,1:0.70:2.81	1/1:0,1:0.69:2.81	1/1:0,1:0.69:2.81	0/0:0,0:0.00:2.81	0/0:0,0:0.00:2.81	1/1:0,2:1.38:2.81	0/0:0,0:0.00:2.81	0/0:0,0:0.00:2.81	0/0:0,0:0.00:2.81	0/0:0,0:0.00:2.81	0/0:0,0:0.00:2.81	0/0:1,0:0.70:2.81	1/1:0,1:0.70:2.81	0/0:0,0:0.00:2.81	0/0:1,0:0.69:2.81	0/0:0,0:0.00:2.81	0/0:0,0:0.00:2.81	1/1:0,2:1.38:2.81	0/0:0,0:0.00:2.81	0/0:0,0:0.00:2.81	0/1:1,2:3.25:2.81	0/0:0,0:0.00:2.81	0/0:0,0:0.00:2.81
1	564557	var_1663577	A	C	.	PF_FAIL_REPEAT;MISMAPPED_UNPLACEABLE	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	1/1:0,2:1.39:0.33	0/0:0,0:0.00:0.33	0/0:0,0:0.00:0.33	0/1:1,1:3.39:0.33	0/1:1,2:3.31:0.33	1/1:0,2:1.39:0.33	1/1:0,1:0.70:0.33	0/0:0,0:0.00:0.33	0/1:1,2:2.98:0.33	1/1:0,1:0.69:0.33	0/0:0,0:0.00:0.33	1/1:0,4:2.77:0.33	0/0:1,0:0.70:0.33	0/0:0,0:0.00:0.33	0/1:1,3:2.62:0.33	0/0:0,0:0.00:0.33	1/1:0,2:1.39:0.33	0/0:0,0:0.00:0.33	0/0:1,0:0.69:0.33	0/0:0,0:0.00:0.33	0/0:0,0:0.00:0.33	0/0:1,0:0.69:0.33	0/0:0,0:0.00:0.33	0/0:0,0:0.00:0.33	0/1:1,2:3.61:0.33	0/0:0,0:0.00:0.33	0/0:0,0:0.00:0.33	1/1:0,1:0.69:0.33	0/1:2,1:3.16:0.33	0/0:0,0:0.00:0.33	1/1:0,1:0.70:0.33	0/0:12,1:2.88:0.33	1/1:0,1:0.70:0.33	0/0:1,0:0.69:0.33	0/1:2,3:8.17:0.33	0/0:0,0:0.00:0.33	0/0:0,0:0.00:0.33	0/0:0,0:0.00:0.33	0/0:1,0:0.69:0.33	0/0:0,0:0.00:0.33	0/0:2,0:1.39:0.33	0/1:1,1:3.33:0.33	1/1:0,1:0.69:0.33	0/0:0,0:0.00:0.33	0/0:0,0:0.00:0.33	0/0:2,0:1.39:0.33	0/0:0,0:0.00:0.33	0/0:0,0:0.00:0.33	0/0:0,0:0.00:0.33	0/1:3,1:2.74:0.33	0/0:1,0:0.70:0.33	0/0:1,0:0.70:0.33	0/0:1,0:0.70:0.33	1/1:0,2:1.38:0.33	0/0:0,0:0.00:0.33	0/0:0,0:0.00:0.33	0/0:0,0:0.00:0.33	0/0:0,0:0.00:0.33	0/0:0,0:0.00:0.33	0/0:2,0:1.38:0.33	0/1:1,1:4.15:0.33	0/0:0,0:0.00:0.33	1/1:0,1:0.70:0.33	0/0:0,0:0.00:0.33	0/0:0,0:0.00:0.33	0/0:0,0:0.00:0.33	1/1:0,1:0.70:0.33	1/1:0,1:0.70:0.33	0/0:0,0:0.00:0.33	0/0:0,0:0.00:0.33	0/0:0,0:0.00:0.33	0/0:0,0:0.00:0.33	1/1:0,1:0.69:0.33	0/0:0,0:0.00:0.33	0/0:0,0:0.00:0.33	0/0:0,0:0.00:0.33	0/0:0,0:0.00:0.33	1/1:0,1:0.69:0.33
1	564559	var_1130511	G	C	.	PF_FAIL_REPEAT;MISMAPPED_UNPLACEABLE	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	0/0:0,0:0.00:1.84	0/0:0,0:0.00:1.84	0/1:1,1:4.15:1.84	0/0:0,0:0.00:1.84	0/0:1,0:0.70:1.84	1/1:0,1:0.69:1.84	0/0:0,0:0.00:1.84	1/1:0,1:0.70:1.84	1/1:0,2:1.38:1.84	0/0:0,0:0.00:1.84	0/0:0,0:0.00:1.84	0/0:1,0:0.69:1.84	0/0:0,0:0.00:1.84	0/0:0,0:0.00:1.84	0/0:0,0:0.00:1.84	0/0:1,0:0.69:1.84	0/0:0,0:0.00:1.84	1/1:0,1:0.69:1.84	0/0:0,0:0.00:1.84	1/1:0,1:0.70:1.84	0/0:0,0:0.00:1.84	0/0:0,0:0.00:1.84	0/0:0,0:0.00:1.84	0/0:0,0:0.00:1.84	0/0:0,0:0.00:1.84	0/0:0,0:0.00:1.84	0/0:0,0:0.00:1.84	0/0:0,0:0.00:1.84	0/0:0,0:0.00:1.84	0/0:0,0:0.00:1.84	0/0:0,0:0.00:1.84	0/1:5,2:6.70:1.84	0/0:0,0:0.00:1.84	0/0:1,0:0.69:1.84	0/1:3,1:3.39:1.84	0/0:0,0:0.00:1.84	0/0:0,0:0.00:1.84	0/0:0,0:0.00:1.84	0/0:1,0:0.69:1.84	0/0:1,0:0.69:1.84	0/0:1,0:0.70:1.84	0/0:0,0:0.00:1.84	0/0:1,0:0.69:1.84	0/0:0,0:0.00:1.84	0/0:0,0:0.00:1.84	0/0:2,0:1.39:1.84	0/0:0,0:0.00:1.84	0/0:0,0:0.00:1.84	0/0:0,0:0.00:1.84	0/0:0,0:0.00:1.84	0/0:0,0:0.00:1.84	0/0:0,0:0.00:1.84	0/0:0,0:0.00:1.84	1/1:0,1:0.69:1.84	0/0:0,0:0.00:1.84	0/0:0,0:0.00:1.84	0/0:0,0:0.00:1.84	1/1:0,1:0.69:1.84	0/0:0,0:0.00:1.84	0/0:0,0:0.00:1.84	0/0:2,0:1.38:1.84	0/0:0,0:0.00:1.84	0/0:0,0:0.00:1.84	0/0:0,0:0.00:1.84	0/0:0,0:0.00:1.84	0/0:0,0:0.00:1.84	0/0:2,0:1.39:1.84	0/0:0,0:0.00:1.84	0/0:0,0:0.00:1.84	0/0:0,0:0.00:1.84	0/0:0,0:0.00:1.84	0/0:0,0:0.00:1.84	1/1:0,1:0.69:1.84	0/0:0,0:0.00:1.84	0/0:0,0:0.00:1.84	0/0:0,0:0.00:1.84	1/1:0,2:1.39:1.84	0/0:0,0:0.00:1.84
1	564562	var_3572827	G	C	.	PF_FAIL_REPEAT;MISMAPPED_UNPLACEABLE	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	1/1:0,2:1.39:7.73	1/1:0,6:4.16:7.73	1/1:0,1:0.69:7.73	1/1:0,5:3.47:7.73	0/0:1,0:0.70:7.73	1/1:0,13:9.01:7.73	0/1:4,1:1.78:7.73	1/1:0,2:1.39:7.73	1/1:0,1:0.70:7.73	0/1:1,6:0.15:7.73	1/1:1,12:3.75:7.73	0/1:1,1:3.33:7.73	0/0:0,0:0.00:7.73	1/1:1,6:0.11:7.73	0/1:2,6:4.54:7.73	0/0:0,0:0.00:7.73	0/0:0,0:0.00:7.73	1/1:1,6:0.05:7.73	1/1:0,1:0.69:7.73	1/1:1,18:7.73:7.73	0/0:1,0:0.69:7.73	0/1:2,8:2.66:7.73	1/1:0,2:1.38:7.73	0/1:1,3:2.73:7.73	0/1:1,4:2.23:7.73	1/1:0,6:4.16:7.73	1/1:0,4:2.77:7.73	1/1:0,2:1.38:7.73	1/1:0,10:6.93:7.73	0/0:0,0:0.00:7.73	1/1:0,4:2.77:7.73	0/1:7,5:17.52:7.73	1/1:0,2:1.39:7.73	0/1:1,3:2.53:7.73	0/0:3,0:2.08:7.73	1/1:0,12:8.32:7.73	1/1:1,7:0.61:7.73	1/1:0,6:4.16:7.73	0/1:1,3:2.81:7.73	1/1:0,4:2.77:7.73	0/0:1,0:0.70:7.73	0/1:3,1:1.95:7.73	1/1:0,1:0.69:7.73	0/0:0,0:0.00:7.73	1/1:0,9:6.24:7.73	0/1:1,2:3.10:7.73	1/1:0,12:8.32:7.73	1/1:1,7:0.63:7.73	1/1:0,2:1.38:7.73	1/1:2,13:0.06:7.73	1/1:1,9:1.74:7.73	0/1:1,6:0.40:7.73	1/1:0,1:0.70:7.73	0/1:1,4:1.72:7.73	0/1:1,1:4.03:7.73	1/1:0,1:0.70:7.73	1/1:0,1:0.69:7.73	0/0:0,0:0.00:7.73	1/1:0,4:2.78:7.73	0/0:0,0:0.00:7.73	0/1:1,2:3.45:7.73	0/0:1,0:0.69:7.73	1/1:0,10:6.93:7.73	1/1:0,1:0.69:7.73	1/1:0,12:8.32:7.73	0/0:0,0:0.00:7.73	0/1:1,3:2.44:7.73	1/1:2,20:4.96:7.73	0/0:0,0:0.00:7.73	1/1:0,10:6.94:7.73	1/1:0,1:0.70:7.73	1/1:0,4:2.78:7.73	0/1:1,1:3.77:7.73	0/0:0,0:0.00:7.73	1/1:0,5:3.47:7.73	1/1:0,1:0.70:7.73	1/1:0,1:0.70:7.73	1/1:1,8:1.24:7.73
1	564565	var_4193756	C	G	.	PF_FAIL_REPEAT	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	1/1:922,2:436.71:183.84	1/1:972,0:573.10:183.84	1/1:2212,0:2564.36:183.84	1/1:734,0:602.99:183.84	1/1:1855,0:2115.61:183.84	1/1:1407,0:1518.11:183.84	1/1:1392,1:1381.59:183.84	1/1:1111,0:700.79:183.84	1/1:1476,0:1826.92:183.84	1/1:1685,1:2420.96:183.84	1/1:1440,0:1462.30:183.84	1/1:826,0:826.09:183.84	0/0:526,0:130.06:183.84	1/1:1041,1:1262.13:183.84	1/1:1487,0:1366.33:183.84	0/0:527,0:78.19:183.84	1/1:1311,1:826.94:183.84	1/1:547,0:280.96:183.84	1/1:982,1:652.96:183.84	1/1:1448,0:1223.64:183.84	1/1:956,0:550.59:183.84	1/1:1234,0:1204.99:183.84	1/1:2106,0:2165.17:183.84	1/1:1669,0:1522.45:183.84	1/1:4723,0:8355.87:183.84	1/1:1065,0:1188.08:183.84	1/1:827,0:524.93:183.84	1/1:1120,0:701.86:183.84	1/1:1563,3:1765.91:183.84	1/1:1015,3:658.82:183.84	1/1:952,2:280.87:183.84	1/1:5526,4:8272.31:183.84	1/1:1318,0:1012.76:183.84	1/1:1792,0:2140.25:183.84	1/1:2329,6:1408.20:183.84	1/1:1859,0:2163.23:183.84	1/1:809,0:615.49:183.84	1/1:695,0:403.21:183.84	1/1:2700,0:3554.23:183.84	1/1:686,0:487.75:183.84	1/1:1470,0:1200.70:183.84	1/1:745,0:667.69:183.84	1/1:1257,1:810.81:183.84	1/1:312,0:336.53:183.84	1/1:1457,0:1436.00:183.84	1/1:1296,0:1290.09:183.84	1/1:1033,0:883.49:183.84	1/1:1267,0:1559.71:183.84	1/1:1674,0:1907.21:183.84	1/1:1785,0:1739.92:183.84	1/1:1268,0:1207.54:183.84	1/1:1126,0:874.89:183.84	1/1:1154,1:907.89:183.84	1/1:918,0:582.84:183.84	1/1:1130,0:703.35:183.84	1/1:1358,0:884.47:183.84	1/1:1275,0:786.94:183.84	1/1:1198,0:810.28:183.84	1/1:631,1:357.00:183.84	1/1:717,0:179.38:183.84	1/1:1591,0:1337.62:183.84	0/0:3,0:2.08:183.84	1/1:765,0:610.13:183.84	1/1:1353,0:1325.60:183.84	1/1:1149,0:961.75:183.84	1/1:1475,0:966.70:183.84	1/1:1328,0:1311.02:183.84	1/1:1714,0:1648.59:183.84	1/1:1977,2:2985.59:183.84	1/1:909,0:763.41:183.84	1/1:960,0:564.20:183.84	1/1:720,0:468.95:183.84	1/1:1129,3:1000.58:183.84	1/1:1190,0:742.02:183.84	1/1:595,0:215.87:183.84	1/1:1772,1:2038.76:183.84	1/1:1430,0:1571.76:183.84	1/1:858,0:647.67:183.84
1	564566	var_5366132	T	G	.	PF_FAIL_REPEAT	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	1/1:916,1:423.30:183.42	1/1:965,0:562.03:183.42	1/1:2207,0:2553.57:183.42	1/1:724,1:589.68:183.42	1/1:1860,0:2126.31:183.42	1/1:1388,0:1478.80:183.42	1/1:1405,0:1402.21:183.42	1/1:1107,0:694.28:183.42	1/1:1482,1:1845.41:183.42	1/1:1696,1:2447.74:183.42	1/1:1425,0:1432.19:183.42	1/1:821,0:816.13:183.42	0/0:525,0:130.80:183.42	1/1:1039,1:1257.73:183.42	1/1:1496,0:1383.61:183.42	0/0:521,0:83.23:183.42	1/1:1307,0:814.89:183.42	1/1:547,0:280.96:183.42	1/1:983,0:649.37:183.42	1/1:1447,0:1221.79:183.42	1/1:956,0:550.59:183.42	1/1:1224,0:1185.31:183.42	1/1:2094,1:2146.52:183.42	1/1:1672,0:1528.17:183.42	1/1:4715,1:8339.41:183.42	1/1:1059,0:1175.43:183.42	1/1:810,0:497.39:183.42	1/1:1113,0:690.52:183.42	1/1:1535,0:1692.93:183.42	1/1:1021,0:654.54:183.42	1/1:956,0:275.53:183.42	1/1:5541,6:8318.56:183.42	1/1:1294,1:976.03:183.42	1/1:1805,1:2174.10:183.42	1/1:2330,1:1385.55:183.42	1/1:1860,0:2165.39:183.42	1/1:802,0:603.23:183.42	1/1:683,0:384.42:183.42	1/1:2691,0:3533.41:183.42	1/1:677,0:472.45:183.42	1/1:1466,0:1193.45:183.42	1/1:744,0:665.80:183.42	1/1:1248,0:790.60:183.42	1/1:312,0:336.53:183.42	1/1:1442,0:1406.34:183.42	1/1:1304,2:1315.71:183.42	1/1:1023,0:865.02:183.42	1/1:1259,0:1541.92:183.42	1/1:1675,0:1909.34:183.42	1/1:1772,2:1724.66:183.42	1/1:1249,0:1170.65:183.42	1/1:1109,1:850.12:183.42	1/1:1139,0:876.04:183.42	1/1:924,0:592.64:183.42	1/1:1124,0:693.65:183.42	1/1:1352,1:880.16:183.42	1/1:1270,0:778.87:183.42	1/1:1203,0:818.65:183.42	1/1:621,0:336.66:183.42	1/1:717,0:179.38:183.42	1/1:1595,0:1344.98:183.42	0/0:3,0:2.08:183.42	1/1:757,0:595.83:183.42	1/1:1355,0:1329.55:183.42	1/1:1137,0:939.81:183.42	1/1:1485,0:983.26:183.42	1/1:1327,0:1309.03:183.42	1/1:1689,0:1599.79:183.42	1/1:1990,0:3008.69:183.42	1/1:899,0:745.10:183.42	1/1:952,0:551.56:183.42	1/1:705,0:444.42:183.42	1/1:1140,0:1007.53:183.42	1/1:1191,0:743.65:183.42	1/1:586,0:203.73:183.42	1/1:1762,2:2021.98:183.42	1/1:1444,2:1610.82:183.42	1/1:853,0:638.94:183.42
1	564570	var_2486596	C	G	.	PF_FAIL_REPEAT	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	1/1:879,0:364.96:181.77	1/1:910,0:476.81:181.77	1/1:2260,1:2673.97:181.77	1/1:706,0:552.68:181.77	1/1:1801,1:2006.32:181.77	1/1:1332,0:1364.44:181.77	1/1:1277,0:1152.86:181.77	1/1:1162,0:784.93:181.77	1/1:1307,0:1459.27:181.77	1/1:1478,0:1925.95:181.77	1/1:1474,1:1536.39:181.77	1/1:791,1:761.72:181.77	0/0:549,0:112.41:181.77	1/1:919,0:995.93:181.77	1/1:1267,0:961.93:181.77	0/0:512,0:90.65:181.77	1/1:1247,0:719.07:181.77	1/1:498,0:209.37:181.77	1/1:998,1:679.57:181.77	1/1:1456,0:1238.40:181.77	1/1:942,0:528.68:181.77	1/1:1213,1:1168.88:181.77	1/1:2014,0:1980.81:181.77	1/1:1380,0:997.13:181.77	1/1:4768,0:8480.64:181.77	1/1:1017,0:1087.80:181.77	1/1:816,0:507.07:181.77	1/1:1172,0:787.45:181.77	1/1:1530,1:1687.68:181.77	1/1:986,0:597.85:181.77	1/1:949,0:266.57:181.77	1/1:5292,5:7698.66:181.77	1/1:1270,0:928.91:181.77	1/1:1666,0:1868.59:181.77	1/1:2409,3:1523.04:181.77	1/1:1799,0:2034.52:181.77	1/1:775,0:556.50:181.77	1/1:655,0:341.39:181.77	1/1:2746,0:3661.09:181.77	1/1:651,0:428.96:181.77	1/1:1411,0:1094.88:181.77	1/1:731,1:646.07:181.77	1/1:1242,0:780.83:181.77	1/1:324,0:361.58:181.77	1/1:1416,0:1355.29:181.77	1/1:1176,1:1061.91:181.77	1/1:1006,0:833.86:181.77	1/1:1172,0:1351.72:181.77	1/1:1547,0:1640.78:181.77	1/1:1667,0:1511.16:181.77	1/1:1266,0:1203.64:181.77	1/1:1098,0:825.58:181.77	1/1:1102,0:811.31:181.77	1/1:847,0:469.87:181.77	1/1:1108,0:667.94:181.77	1/1:1316,0:815.89:181.77	1/1:1253,0:751.61:181.77	1/1:1191,0:798.59:181.77	1/1:607,0:315.31:181.77	1/1:766,0:242.01:181.77	1/1:1572,0:1302.81:181.77	1/1:446,1:132.25:181.77	1/1:706,0:506.70:181.77	1/1:1281,0:1185.22:181.77	1/1:1122,0:912.57:181.77	1/1:1491,0:993.23:181.77	1/1:1160,0:988.78:181.77	1/1:1671,1:1570.37:181.77	1/1:1795,0:2529.16:181.77	1/1:866,0:685.51:181.77	1/1:982,0:599.29:181.77	1/1:684,0:410.60:181.77	1/1:1040,0:824.01:181.77	1/1:1171,0:711.39:181.77	1/1:569,0:181.16:181.77	1/1:1780,0:2050.60:181.77	1/1:1279,1:1268.65:181.77	1/1:787,1:531.42:181.77
1	564571	var_2258673	C	G	.	PF_FAIL_REPEAT;MISMAPPED_UNPLACEABLE	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	0/0:0,0:0.00:1.61	0/0:0,0:0.00:1.61	0/1:1,2:3.47:1.61	0/0:1,0:0.69:1.61	0/0:0,0:0.00:1.61	0/0:2,0:1.39:1.61	1/1:0,3:2.08:1.61	0/0:0,0:0.00:1.61	0/0:2,0:1.38:1.61	0/0:1,0:0.69:1.61	0/0:1,0:0.69:1.61	0/1:3,4:7.52:1.61	0/0:0,0:0.00:1.61	0/0:3,0:2.08:1.61	0/0:0,0:0.00:1.61	0/0:0,0:0.00:1.61	0/0:0,0:0.00:1.61	0/0:0,0:0.00:1.61	0/0:0,0:0.00:1.61	0/0:0,0:0.00:1.61	0/0:0,0:0.00:1.61	1/1:0,1:0.69:1.61	0/0:0,0:0.00:1.61	1/1:0,1:0.69:1.61	0/0:0,0:0.00:1.61	0/0:1,0:0.69:1.61	0/0:0,0:0.00:1.61	0/0:0,0:0.00:1.61	0/0:0,0:0.00:1.61	0/0:0,0:0.00:1.61	0/0:0,0:0.00:1.61	1/1:1,9:0.81:1.61	0/0:1,0:0.70:1.61	0/1:1,1:3.91:1.61	0/1:1,5:2.00:1.61	0/0:0,0:0.00:1.61	0/0:0,0:0.00:1.61	1/1:0,1:0.69:1.61	0/0:0,0:0.00:1.61	0/0:1,0:0.69:1.61	1/1:0,1:0.70:1.61	1/1:0,3:2.08:1.61	0/0:0,0:0.00:1.61	0/0:0,0:0.00:1.61	1/1:0,1:0.69:1.61	0/1:2,1:3.10:1.61	0/0:0,0:0.00:1.61	0/1:1,1:3.53:1.61	0/0:0,0:0.00:1.61	0/0:0,0:0.00:1.61	0/0:2,0:1.38:1.61	0/0:1,0:0.70:1.61	0/0:0,0:0.00:1.61	0/1:1,2:3.11:1.61	0/0:0,0:0.00:1.61	0/0:0,0:0.00:1.61	0/0:0,0:0.00:1.61	0/0:0,0:0.00:1.61	0/0:0,0:0.00:1.61	0/0:0,0:0.00:1.61	1/1:0,1:0.70:1.61	0/0:1,0:0.69:1.61	0/0:0,0:0.00:1.61	0/0:1,0:0.69:1.61	0/0:1,0:0.69:1.61	0/0:1,0:0.69:1.61	0/0:0,0:0.00:1.61	0/1:2,1:3.41:1.61	0/0:1,0:0.69:1.61	0/0:0,0:0.00:1.61	1/1:0,1:0.70:1.61	0/0:0,0:0.00:1.61	0/1:1,1:3.77:1.61	0/0:0,0:0.00:1.61	0/0:0,0:0.00:1.61	0/0:0,0:0.00:1.61	0/0:1,0:0.70:1.61	0/0:0,0:0.00:1.61
1	564572	var_4802736	C	T	.	PF_FAIL_REPEAT	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	1/1:938,0:450.13:184.92	1/1:981,0:587.42:184.92	1/1:2237,1:2623.98:184.92	1/1:711,0:561.58:184.92	1/1:1929,0:2275.30:184.92	1/1:1418,0:1540.99:184.92	1/1:1455,0:1502.86:184.92	1/1:1106,1:698.05:184.92	1/1:1531,0:1950.85:184.92	1/1:1742,2:2564.82:184.92	1/1:1443,0:1468.33:184.92	1/1:838,2:858.87:184.92	0/0:543,0:117.10:184.92	1/1:1080,0:1344.07:184.92	1/1:1531,0:1451.29:184.92	0/0:529,0:76.50:184.92	1/1:1310,1:825.31:184.92	1/1:540,0:270.46:184.92	1/1:998,0:674.34:184.92	1/1:1470,0:1264.33:184.92	1/1:953,0:545.88:184.92	1/1:1266,0:1268.56:184.92	1/1:2135,0:2224.12:184.92	1/1:1706,2:1603.83:184.92	1/1:4771,0:8488.98:184.92	1/1:1084,0:1228.38:184.92	1/1:840,0:546.23:184.92	1/1:1112,2:699.00:184.92	1/1:1585,0:1798.76:184.92	1/1:1035,1:682.86:184.92	1/1:978,0:304.04:184.92	1/1:5618,9:8523.36:184.92	1/1:1308,0:995.15:184.92	1/1:1832,0:2228.38:184.92	1/1:2353,5:1442.11:184.92	1/1:1914,0:2282.91:184.92	1/1:812,0:620.75:184.92	1/1:711,0:428.59:184.92	1/1:2721,1:3608.51:184.92	1/1:700,0:511.76:184.92	1/1:1468,0:1197.07:184.92	1/1:753,1:687.59:184.92	1/1:1280,0:843.18:184.92	1/1:323,0:359.47:184.92	1/1:1463,0:1447.91:184.92	1/1:1355,2:1418.61:184.92	1/1:1049,1:918.33:184.92	1/1:1285,0:1599.95:184.92	1/1:1671,2:1910.68:184.92	1/1:1846,0:1861.26:184.92	1/1:1255,0:1182.27:184.92	1/1:1124,0:871.35:184.92	1/1:1098,0:804.39:184.92	1/1:964,0:658.99:184.92	1/1:1152,0:739.17:184.92	1/1:1366,2:908.11:184.92	1/1:1278,0:791.78:184.92	1/1:1230,0:864.24:184.92	1/1:635,0:358.32:184.92	1/1:700,1:163.74:184.92	1/1:1604,2:1371.95:184.92	0/0:1,0:0.69:184.92	1/1:777,0:631.74:184.92	1/1:1388,0:1395.23:184.92	1/1:1162,0:985.66:184.92	1/1:1527,0:1053.54:184.92	1/1:1386,0:1427.35:184.92	1/1:1726,0:1672.15:184.92	1/1:2041,3:3150.80:184.92	1/1:900,0:746.93:184.92	1/1:963,1:574.24:184.92	1/1:719,0:467.30:184.92	1/1:1162,1:1054.27:184.92	1/1:1200,0:758.27:184.92	1/1:612,0:239.17:184.92	1/1:1797,5:2109.12:184.92	1/1:1502,0:1724.47:184.92	1/1:849,0:631.97:184.92
1	564575	var_1986816	C	G	.	PF_FAIL_REPEAT	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	1/1:922,0:426.67:183.11	1/1:958,0:551.01:183.11	1/1:2170,0:2474.14:183.11	1/1:697,0:536.73:183.11	1/1:1889,0:2188.62:183.11	1/1:1369,0:1439.74:183.11	1/1:1472,1:1542.72:183.11	1/1:1096,0:676.48:183.11	1/1:1528,0:1944.05:183.11	1/1:1753,0:2582.65:183.11	1/1:1392,0:1366.50:183.11	1/1:825,1:828.82:183.11	0/0:534,0:124.03:183.11	1/1:1089,0:1364.28:183.11	1/1:1487,0:1366.33:183.11	0/0:497,0:102.67:183.11	1/1:1262,0:742.76:183.11	1/1:514,0:232.24:183.11	1/1:959,0:609.92:183.11	1/1:1409,0:1152.32:183.11	1/1:913,0:483.98:183.11	1/1:1216,0:1169.61:183.11	1/1:2082,0:2116.68:183.11	1/1:1624,0:1437.12:183.11	1/1:4627,2:8101.79:183.11	1/1:1070,1:1203.51:183.11	1/1:801,0:482.96:183.11	1/1:1092,0:656.76:183.11	1/1:1545,0:1713.97:183.11	1/1:1010,0:636.59:183.11	1/1:959,0:279.39:183.11	1/1:5441,7:8074.15:183.11	1/1:1283,1:956.86:183.11	1/1:1824,0:2210.68:183.11	1/1:2244,1:1250.40:183.11	1/1:1858,0:2161.06:183.11	1/1:790,0:582.34:183.11	1/1:690,0:395.35:183.11	1/1:2685,0:3519.55:183.11	1/1:695,0:503.15:183.11	1/1:1417,0:1105.53:183.11	1/1:730,0:639.48:183.11	1/1:1271,0:828.31:183.11	1/1:310,0:332.40:183.11	1/1:1420,0:1363.11:183.11	1/1:1363,0:1425.27:183.11	1/1:1033,0:883.49:183.11	1/1:1278,0:1584.28:183.11	1/1:1612,0:1775.89:183.11	1/1:1832,1:1838.74:183.11	1/1:1186,0:1050.41:183.11	1/1:1098,0:825.58:183.11	1/1:1066,0:749.54:183.11	1/1:948,1:637.44:183.11	1/1:1126,0:696.88:183.11	1/1:1347,0:866.38:183.11	1/1:1254,0:753.22:183.11	1/1:1195,0:805.26:183.11	1/1:593,0:294.29:183.11	1/1:692,0:148.69:183.11	1/1:1578,0:1313.78:183.11	1/1:473,0:162.72:183.11	1/1:752,0:586.94:183.11	1/1:1380,1:1384.47:183.11	1/1:1103,0:878.34:183.11	1/1:1492,0:994.89:183.11	1/1:1407,0:1470.07:183.11	1/1:1697,0:1615.37:183.11	1/1:2057,1:3183.05:183.11	1/1:898,0:743.29:183.11	1/1:949,0:546.84:183.11	1/1:709,0:450.93:183.11	1/1:1152,0:1030.15:183.11	1/1:1172,0:713.00:183.11	1/1:583,0:199.71:183.11	1/1:1742,1:1974.66:183.11	1/1:1507,0:1735.21:183.11	1/1:828,0:595.70:183.11
1	564577	var_5844610	A	C	.	PF_FAIL_REPEAT	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	1/1:929,0:436.90:183.23	1/1:968,0:566.76:183.23	1/1:2159,0:2450.65:183.23	1/1:703,0:547.35:183.23	1/1:1872,0:2152.03:183.23	1/1:1362,1:1430.59:183.23	1/1:1477,1:1552.93:183.23	1/1:1087,2:672.08:183.23	1/1:1527,0:1941.78:183.23	1/1:1745,1:2567.90:183.23	1/1:1403,0:1388.31:183.23	1/1:821,1:820.85:183.23	0/0:542,0:117.88:183.23	1/1:1094,0:1375.53:183.23	1/1:1482,0:1356.77:183.23	0/0:482,0:114.24:183.23	1/1:1276,0:765.03:183.23	1/1:513,0:230.79:183.23	1/1:954,0:601.76:183.23	1/1:1408,0:1150.51:183.23	1/1:927,1:510.74:183.23	1/1:1215,0:1167.65:183.23	1/1:2091,0:2134.83:183.23	1/1:1608,0:1407.08:183.23	1/1:4610,1:8050.12:183.23	1/1:1065,0:1188.08:183.23	1/1:791,0:467.04:183.23	1/1:1096,0:663.16:183.23	1/1:1521,0:1663.60:183.23	1/1:997,0:615.54:183.23	1/1:972,1:301.79:183.23	1/1:5383,3:7913.05:183.23	1/1:1286,1:962.08:183.23	1/1:1842,0:2250.54:183.23	1/1:2221,2:1220.28:183.23	1/1:1859,1:2168.60:183.23	1/1:800,0:599.73:183.23	1/1:688,0:392.22:183.23	1/1:2677,0:3501.09:183.23	1/1:692,0:498.01:183.23	1/1:1399,1:1079.12:183.23	1/1:719,0:618.98:183.23	1/1:1276,0:836.56:183.23	1/1:316,0:344.83:183.23	1/1:1410,0:1343.57:183.23	1/1:1355,1:1414.14:183.23	1/1:1024,0:866.86:183.23	1/1:1277,0:1582.03:183.23	1/1:1622,0:1796.91:183.23	1/1:1851,0:1871.30:183.23	1/1:1171,0:1022.27:183.23	1/1:1084,0:801.19:183.23	1/1:1059,0:737.67:183.23	1/1:945,0:627.27:183.23	1/1:1121,1:694.22:183.23	1/1:1370,0:904.30:183.23	1/1:1260,0:762.82:183.23	1/1:1201,0:815.30:183.23	1/1:596,0:298.76:183.23	1/1:708,0:168.22:183.23	1/1:1569,1:1302.87:183.23	1/1:479,0:170.78:183.23	1/1:746,0:576.31:183.23	1/1:1382,0:1383.23:183.23	1/1:1095,0:864.03:183.23	1/1:1486,0:984.92:183.23	1/1:1393,1:1446.76:183.23	1/1:1687,1:1601.38:183.23	1/1:2076,1:3231.45:183.23	1/1:903,0:752.41:183.23	1/1:957,0:559.45:183.23	1/1:705,0:444.42:183.23	1/1:1150,0:1026.37:183.23	1/1:1176,0:719.42:183.23	1/1:569,0:181.16:183.23	1/1:1755,0:1997.04:183.23	1/1:1504,0:1728.77:183.23	1/1:822,0:585.43:183.23
1	564578	var_3745853	T	C	.	PF_FAIL_REPEAT	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	1/1:894,1:391.62:181.19	1/1:870,0:416.91:181.19	1/1:2188,1:2518.25:181.19	1/1:699,0:540.27:181.19	1/1:1776,0:1948.39:181.19	1/1:1298,1:1301.32:181.19	1/1:1300,0:1196.75:181.19	1/1:1123,0:720.38:181.19	1/1:1319,0:1484.69:181.19	1/1:1512,1:2009.53:181.19	1/1:1417,0:1416.19:181.19	1/1:762,2:709.67:181.19	0/0:531,0:126.30:181.19	1/1:905,0:966.92:181.19	1/1:1268,0:963.68:181.19	0/0:507,0:94.71:181.19	1/1:1211,0:662.94:181.19	1/1:493,1:207.13:181.19	1/1:972,0:631.22:181.19	1/1:1396,0:1128.79:181.19	1/1:919,0:493.15:181.19	1/1:1174,0:1088.08:181.19	1/1:2021,0:1994.69:181.19	1/1:1401,0:1033.40:181.19	1/1:4556,1:7902.26:181.19	1/1:1001,0:1054.88:181.19	1/1:796,0:474.98:181.19	1/1:1143,0:739.42:181.19	1/1:1511,0:1642.72:181.19	1/1:976,0:581.88:181.19	1/1:895,0:199.18:181.19	1/1:5350,0:7815.18:181.19	1/1:1245,0:885.95:181.19	1/1:1659,0:1853.78:181.19	1/1:2308,0:1344.51:181.19	1/1:1777,0:1987.83:181.19	1/1:757,0:525.87:181.19	1/1:672,0:367.38:181.19	1/1:2614,0:3356.55:181.19	1/1:645,0:419.06:181.19	1/1:1373,0:1028.01:181.19	1/1:706,0:594.97:181.19	1/1:1204,0:719.65:181.19	1/1:312,0:336.53:181.19	1/1:1375,0:1275.76:181.19	1/1:1190,3:1097.09:181.19	1/1:986,0:797.55:181.19	1/1:1151,12:1345.78:181.19	1/1:1555,0:1655.20:181.19	1/1:1653,0:1484.56:181.19	1/1:1240,0:1153.27:181.19	1/1:1074,0:783.89:181.19	1/1:1099,0:806.12:181.19	1/1:849,1:478.17:181.19	1/1:1074,1:619.50:181.19	1/1:1290,0:774.11:181.19	1/1:1241,0:732.51:181.19	1/1:1154,0:737.48:181.19	1/1:590,0:289.82:181.19	1/1:728,0:193.15:181.19	1/1:1563,0:1286.41:181.19	0/0:3,0:2.08:181.19	1/1:715,0:522.17:181.19	1/1:1255,0:1135.51:181.19	1/1:1091,0:856.89:181.19	1/1:1406,0:854.30:181.19	1/1:1179,3:1037.89:181.19	1/1:1637,0:1499.47:181.19	1/1:1809,1:2568.00:181.19	1/1:868,0:689.08:181.19	1/1:956,0:557.87:181.19	1/1:685,0:412.20:181.19	1/1:1042,2:837.22:181.19	1/1:1144,0:668.40:181.19	1/1:559,0:168.14:181.19	1/1:1732,1:1953.41:181.19	1/1:1294,0:1293.34:181.19	1/1:777,1:514.84:181.19
1	564578	var_4314785	T	C	.	PF_FAIL_REPEAT	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	1/1:921,0:425.20:177.98	1/1:947,0:533.78:177.98	1/1:2154,0:2440.00:177.98	1/1:703,0:547.35:177.98	0/0:6,0:4.16:177.98	1/1:1345,0:1390.78:177.98	1/1:1472,1:1542.72:177.98	1/1:1083,0:655.59:177.98	1/1:1511,0:1905.56:177.98	1/1:1736,1:2545.73:177.98	1/1:1395,1:1377.70:177.98	1/1:813,0:800.25:177.98	0/0:539,0:120.20:177.98	1/1:1081,0:1346.31:177.98	1/1:1470,0:1333.86:177.98	0/0:483,0:113.47:177.98	1/1:1260,0:739.59:177.98	1/1:512,0:229.35:177.98	1/1:954,0:601.76:177.98	1/1:1386,0:1110.77:177.98	1/1:921,0:496.22:177.98	1/1:1200,0:1138.38:177.98	1/1:2061,0:2074.48:177.98	1/1:1597,0:1386.52:177.98	1/1:4549,0:7877.45:177.98	0/0:3,0:2.08:177.98	1/1:781,0:451.24:177.98	1/1:1086,0:647.19:177.98	1/1:1508,0:1636.47:177.98	1/1:996,0:613.92:177.98	1/1:967,0:289.72:177.98	1/1:5387,1:7912.45:177.98	1/1:1287,0:958.40:177.98	1/1:1839,1:2249.18:177.98	1/1:2204,1:1188.66:177.98	0/0:65,0:45.05:177.98	1/1:797,0:594.50:177.98	1/1:676,0:373.54:177.98	1/1:2646,0:3429.77:177.98	1/1:691,0:496.29:177.98	1/1:1402,0:1078.94:177.98	1/1:708,1:603.37:177.98	1/1:1266,0:820.08:177.98	1/1:313,0:338.61:177.98	1/1:1402,0:1328.00:177.98	1/1:1361,0:1421.20:177.98	1/1:1011,1:848.08:177.98	0/0:7,0:4.85:177.98	1/1:1612,0:1775.89:177.98	0/0:22,0:15.25:177.98	1/1:1153,0:988.76:177.98	1/1:1065,0:768.39:177.98	1/1:1049,0:720.78:177.98	1/1:936,1:617.56:177.98	1/1:1105,0:663.15:177.98	1/1:1375,0:912.60:177.98	1/1:1245,0:738.87:177.98	1/1:1206,0:823.70:177.98	1/1:594,0:295.77:177.98	1/1:709,0:169.46:177.98	1/1:1558,0:1277.31:177.98	1/1:478,0:169.43:177.98	1/1:743,0:571.01:177.98	0/0:0,0:0.00:177.98	1/1:1085,1:851.43:177.98	1/1:1469,0:956.79:177.98	1/1:1395,2:1455.34:177.98	1/1:1676,1:1580.04:177.98	1/1:2074,1:3226.35:177.98	1/1:896,0:739.64:177.98	1/1:949,0:546.84:177.98	1/1:698,0:433.07:177.98	1/1:1145,0:1016.94:177.98	1/1:1162,1:702.45:177.98	1/1:561,0:170.73:177.98	1/1:1739,0:1962.94:177.98	1/1:1512,0:1745.95:177.98	1/1:812,1:573.42:177.98
1	564580	var_2625790	T	C	.	PF_FAIL_REPEAT	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	1/1:927,1:439.34:179.09	1/1:951,1:545.33:179.09	1/1:2175,0:2484.84:179.09	1/1:704,0:547.35:179.09	0/0:6,0:4.16:179.09	1/1:1355,0:1411.13:179.09	1/1:1478,0:1549.73:179.09	1/1:1091,0:668.43:179.09	1/1:1520,2:1935.34:179.09	1/1:1736,0:2540.73:179.09	1/1:1397,0:1376.40:179.09	1/1:813,2:809.00:179.09	0/0:543,1:111.59:179.09	1/1:1085,2:1364.09:179.09	1/1:1470,0:1333.86:179.09	0/0:488,0:109.66:179.09	1/1:1266,0:749.11:179.09	1/1:512,0:229.35:179.09	1/1:975,0:636.15:179.09	1/1:1390,0:1117.97:179.09	1/1:922,0:497.76:179.09	1/1:1200,2:1147.98:179.09	1/1:2066,0:2084.51:179.09	1/1:1603,0:1397.73:179.09	1/1:4559,0:7904.76:179.09	0/0:3,0:2.08:179.09	1/1:781,0:451.24:179.09	1/1:1089,1:657.37:179.09	1/1:1508,1:1641.70:179.09	1/1:1000,2:630.27:179.09	1/1:981,0:307.96:179.09	1/1:5387,5:7932.16:179.09	1/1:1287,1:963.82:179.09	1/1:1848,1:2269.17:179.09	1/1:2224,2:1224.91:179.09	0/0:65,0:45.05:179.09	1/1:801,0:594.50:179.09	1/1:678,0:376.64:179.09	1/1:2646,1:3435.36:179.09	1/1:693,0:499.72:179.09	1/1:1410,1:1098.58:179.09	1/1:706,1:603.37:179.09	1/1:1285,0:851.46:179.09	1/1:316,0:344.83:179.09	1/1:1402,1:1333.30:179.09	1/1:1369,1:1442.72:179.09	1/1:1018,0:855.82:179.09	0/0:7,0:4.85:179.09	1/1:1632,1:1823.28:179.09	0/0:23,0:15.95:179.09	1/1:1158,0:998.04:179.09	1/1:1077,0:789.07:179.09	1/1:1067,0:751.23:179.09	1/1:946,0:628.92:179.09	1/1:1107,1:671.75:179.09	1/1:1385,0:929.24:179.09	1/1:1242,0:738.87:179.09	1/1:1210,0:830.41:179.09	1/1:601,0:306.26:179.09	1/1:718,0:180.62:179.09	1/1:1564,0:1288.22:179.09	1/1:480,1:176.95:179.09	1/1:755,2:601.27:179.09	0/0:0,0:0.00:179.09	1/1:1087,0:849.77:179.09	1/1:1483,0:979.94:179.09	1/1:1407,2:1479.79:179.09	1/1:1683,0:1588.13:179.09	1/1:2075,0:3223.81:179.09	1/1:907,0:759.74:179.09	1/1:961,1:571.07:179.09	1/1:702,0:439.54:179.09	1/1:1158,0:1041.51:179.09	1/1:1181,0:727.48:179.09	1/1:562,1:177.06:179.09	1/1:1748,0:1982.11:179.09	1/1:1528,0:1780.47:179.09	1/1:816,0:575.20:179.09
1	564581	var_2013844	C	G	.	PF_FAIL_REPEAT;MISMAPPED_UNPLACEABLE	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	0/0:0,0:0.00:7.44	0/0:0,0:0.00:7.44	1/1:0,3:2.08:7.44	0/0:0,0:0.00:7.44	0/1:1,1:4.00:7.44	0/1:2,1:3.10:7.44	0/1:2,2:7.04:7.44	0/0:2,0:1.39:7.44	1/1:0,1:0.70:7.44	0/1:1,1:3.61:7.44	1/1:0,1:0.69:7.44	0/0:2,0:1.39:7.44	1/1:0,1:0.70:7.44	0/0:1,0:0.69:7.44	0/0:0,0:0.00:7.44	0/0:0,0:0.00:7.44	0/0:0,0:0.00:7.44	0/0:0,0:0.00:7.44	0/0:1,0:0.69:7.44	0/0:0,0:0.00:7.44	1/1:0,1:0.69:7.44	1/1:0,1:0.69:7.44	1/1:0,1:0.69:7.44	0/0:0,0:0.00:7.44	0/1:2,2:7.91:7.44	1/1:0,1:0.69:7.44	0/0:1,0:0.69:7.44	0/1:2,1:3.32:7.44	0/0:0,0:0.00:7.44	1/1:0,1:0.69:7.44	0/0:0,0:0.00:7.44	0/1:2,11:2.55:7.44	0/0:1,0:0.70:7.44	0/0:0,0:0.00:7.44	0/1:3,4:11.85:7.44	0/0:1,0:0.69:7.44	0/0:1,0:0.70:7.44	0/0:0,0:0.00:7.44	0/0:1,0:0.69:7.44	0/0:0,0:0.00:7.44	0/0:1,0:0.70:7.44	0/0:0,0:0.00:7.44	0/0:1,0:0.69:7.44	0/0:0,0:0.00:7.44	1/1:0,1:0.69:7.44	0/1:1,1:3.79:7.44	0/0:0,0:0.00:7.44	0/0:0,0:0.00:7.44	0/0:1,0:0.69:7.44	0/0:0,0:0.00:7.44	0/0:0,0:0.00:7.44	0/1:1,1:3.87:7.44	0/1:1,1:3.89:7.44	0/0:0,0:0.00:7.44	0/0:0,0:0.00:7.44	1/1:0,1:0.70:7.44	0/0:0,0:0.00:7.44	0/1:1,3:2.64:7.44	0/0:0,0:0.00:7.44	0/0:0,0:0.00:7.44	0/0:0,0:0.00:7.44	0/0:0,0:0.00:7.44	0/0:0,0:0.00:7.44	0/0:0,0:0.00:7.44	0/0:1,0:0.69:7.44	0/1:1,2:3.57:7.44	0/0:1,0:0.70:7.44	0/0:0,0:0.00:7.44	0/0:1,0:0.69:7.44	0/0:0,0:0.00:7.44	0/0:1,0:0.70:7.44	1/1:0,1:0.69:7.44	0/0:0,0:0.00:7.44	1/1:0,3:2.08:7.44	0/0:0,0:0.00:7.44	0/0:1,0:0.70:7.44	0/0:0,0:0.00:7.44	1/1:0,1:0.69:7.44
1	564584	var_5400333	C	G	.	MISMAPPED_UNPLACEABLE	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	0/0:0,0:0.00:0.06	1/1:0,1:0.70:0.06	0/0:0,0:0.00:0.06	0/0:0,0:0.00:0.06	1/1:0,2:1.38:0.06	0/0:0,0:0.00:0.06	0/1:1,1:3.87:0.06	0/0:0,0:0.00:0.06	0/0:0,0:0.00:0.06	0/0:1,0:0.69:0.06	0/0:0,0:0.00:0.06	0/0:1,0:0.69:0.06	0/0:0,0:0.00:0.06	0/0:0,0:0.00:0.06	0/0:0,0:0.00:0.06	0/0:0,0:0.00:0.06	0/0:1,0:0.69:0.06	0/0:0,0:0.00:0.06	0/0:1,0:0.69:0.06	1/1:0,1:0.70:0.06	0/0:1,0:0.69:0.06	0/0:0,0:0.00:0.06	0/0:1,0:0.69:0.06	0/0:0,0:0.00:0.06	0/1:1,1:4.30:0.06	1/1:0,1:0.69:0.06	0/0:0,0:0.00:0.06	0/0:1,0:0.69:0.06	0/0:0,0:0.00:0.06	0/0:0,0:0.00:0.06	0/0:0,0:0.00:0.06	0/1:2,4:7.40:0.06	0/0:1,0:0.70:0.06	0/0:1,0:0.69:0.06	1/1:0,2:1.38:0.06	0/0:0,0:0.00:0.06	0/0:0,0:0.00:0.06	0/0:0,0:0.00:0.06	0/0:0,0:0.00:0.06	0/0:0,0:0.00:0.06	0/0:1,0:0.70:0.06	0/1:1,2:2.65:0.06	0/0:0,0:0.00:0.06	0/0:0,0:0.00:0.06	0/0:0,0:0.00:0.06	1/1:0,1:0.69:0.06	0/0:1,0:0.69:0.06	0/0:1,0:0.70:0.06	0/0:0,0:0.00:0.06	0/0:0,0:0.00:0.06	0/0:1,0:0.70:0.06	0/0:0,0:0.00:0.06	0/0:0,0:0.00:0.06	1/1:0,1:0.69:0.06	0/0:0,0:0.00:0.06	0/0:1,0:0.70:0.06	0/0:0,0:0.00:0.06	0/0:0,0:0.00:0.06	0/0:0,0:0.00:0.06	0/0:0,0:0.00:0.06	0/0:2,0:1.38:0.06	0/0:0,0:0.00:0.06	0/0:0,0:0.00:0.06	0/0:1,0:0.69:0.06	0/0:0,0:0.00:0.06	0/0:0,0:0.00:0.06	0/0:2,0:1.39:0.06	0/0:0,0:0.00:0.06	0/0:2,0:1.39:0.06	1/1:0,1:0.69:0.06	0/0:1,0:0.70:0.06	0/0:0,0:0.00:0.06	0/0:3,0:2.08:0.06	0/0:0,0:0.00:0.06	0/0:0,0:0.00:0.06	0/0:1,0:0.70:0.06	0/0:0,0:0.00:0.06	0/0:1,0:0.69:0.06
1	564585	var_1686747	C	G	.	MISMAPPED_UNPLACEABLE	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	0/0:0,0:0.00:0.06	0/0:1,0:0.70:0.06	0/0:0,0:0.00:0.06	0/0:0,0:0.00:0.06	0/0:1,0:0.70:0.06	0/0:0,0:0.00:0.06	0/0:0,0:0.00:0.06	0/0:0,0:0.00:0.06	0/0:1,0:0.70:0.06	0/0:2,0:1.38:0.06	0/0:0,0:0.00:0.06	1/1:0,1:0.69:0.06	0/0:0,0:0.00:0.06	0/0:1,0:0.69:0.06	1/1:0,1:0.69:0.06	0/0:0,0:0.00:0.06	0/0:0,0:0.00:0.06	0/0:0,0:0.00:0.06	1/1:0,1:0.69:0.06	0/0:1,0:0.70:0.06	0/0:0,0:0.00:0.06	0/0:0,0:0.00:0.06	0/0:0,0:0.00:0.06	1/1:0,1:0.69:0.06	0/0:0,0:0.00:0.06	0/0:1,0:0.69:0.06	0/0:1,0:0.69:0.06	0/0:1,0:0.69:0.06	0/0:0,0:0.00:0.06	0/0:0,0:0.00:0.06	0/0:0,0:0.00:0.06	0/1:1,7:0.58:0.06	0/0:0,0:0.00:0.06	0/0:1,0:0.69:0.06	0/0:0,0:0.00:0.06	0/0:0,0:0.00:0.06	0/0:0,0:0.00:0.06	0/0:0,0:0.00:0.06	0/0:1,0:0.69:0.06	0/0:0,0:0.00:0.06	0/0:0,0:0.00:0.06	0/0:1,0:0.69:0.06	0/0:0,0:0.00:0.06	0/0:0,0:0.00:0.06	1/1:0,1:0.69:0.06	0/0:1,0:0.69:0.06	0/0:0,0:0.00:0.06	1/1:0,1:0.70:0.06	0/0:0,0:0.00:0.06	0/0:0,0:0.00:0.06	0/0:0,0:0.00:0.06	0/0:0,0:0.00:0.06	0/0:0,0:0.00:0.06	0/0:1,0:0.69:0.06	0/0:0,0:0.00:0.06	0/0:0,0:0.00:0.06	0/0:0,0:0.00:0.06	0/0:0,0:0.00:0.06	0/0:0,0:0.00:0.06	0/0:0,0:0.00:0.06	0/0:0,0:0.00:0.06	0/0:0,0:0.00:0.06	0/0:0,0:0.00:0.06	1/1:0,1:0.69:0.06	0/0:0,0:0.00:0.06	0/0:0,0:0.00:0.06	0/0:0,0:0.00:0.06	0/0:1,0:0.70:0.06	0/0:0,0:0.00:0.06	0/0:0,0:0.00:0.06	0/0:0,0:0.00:0.06	1/1:0,1:0.69:0.06	0/0:0,0:0.00:0.06	0/0:0,0:0.00:0.06	0/0:0,0:0.00:0.06	0/0:0,0:0.00:0.06	0/0:0,0:0.00:0.06	0/0:0,0:0.00:0.06
1	564586	var_3146525	C	A	.	PF_FAIL_REPEAT;MISMAPPED_UNPLACEABLE	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	0/0:0,0:0.00:0.61	0/0:0,0:0.00:0.61	1/1:0,6:4.16:0.61	0/0:0,0:0.00:0.61	0/0:0,0:0.00:0.61	0/0:1,0:0.69:0.61	1/1:0,1:0.70:0.61	0/0:1,0:0.70:0.61	0/1:1,2:2.98:0.61	0/0:0,0:0.00:0.61	0/0:0,0:0.00:0.61	0/1:2,1:2.64:0.61	0/0:0,0:0.00:0.61	0/0:0,0:0.00:0.61	0/0:0,0:0.00:0.61	0/0:0,0:0.00:0.61	0/0:0,0:0.00:0.61	0/0:0,0:0.00:0.61	0/0:0,0:0.00:0.61	0/0:0,0:0.00:0.61	0/0:0,0:0.00:0.61	0/0:0,0:0.00:0.61	0/0:1,0:0.69:0.61	0/0:0,0:0.00:0.61	0/0:1,0:0.69:0.61	0/0:0,0:0.00:0.61	0/0:0,0:0.00:0.61	0/0:0,0:0.00:0.61	0/0:0,0:0.00:0.61	0/0:0,0:0.00:0.61	0/0:0,0:0.00:0.61	0/1:3,4:11.74:0.61	0/0:0,0:0.00:0.61	1/1:0,1:0.69:0.61	1/1:0,3:2.08:0.61	0/0:0,0:0.00:0.61	0/0:0,0:0.00:0.61	0/0:0,0:0.00:0.61	0/0:0,0:0.00:0.61	0/0:0,0:0.00:0.61	0/0:0,0:0.00:0.61	1/1:0,1:0.69:0.61	0/0:0,0:0.00:0.61	0/0:0,0:0.00:0.61	0/0:0,0:0.00:0.61	0/0:0,0:0.00:0.61	0/0:0,0:0.00:0.61	0/0:0,0:0.00:0.61	0/0:0,0:0.00:0.61	0/0:0,0:0.00:0.61	0/0:1,0:0.70:0.61	0/0:0,0:0.00:0.61	0/0:0,0:0.00:0.61	0/0:0,0:0.00:0.61	0/0:0,0:0.00:0.61	0/0:1,0:0.70:0.61	0/0:0,0:0.00:0.61	0/0:0,0:0.00:0.61	0/0:0,0:0.00:0.61	1/1:0,1:0.69:0.61	1/1:0,1:0.70:0.61	0/0:0,0:0.00:0.61	0/0:0,0:0.00:0.61	0/0:0,0:0.00:0.61	0/0:0,0:0.00:0.61	1/1:0,1:0.69:0.61	0/0:0,0:0.00:0.61	0/0:0,0:0.00:0.61	0/0:0,0:0.00:0.61	0/0:0,0:0.00:0.61	0/0:0,0:0.00:0.61	0/0:0,0:0.00:0.61	0/0:0,0:0.00:0.61	0/0:0,0:0.00:0.61	0/0:0,0:0.00:0.61	0/0:0,0:0.00:0.61	1/1:0,1:0.70:0.61	0/0:0,0:0.00:0.61
1	564588	var_2946159	G	C	.	PF_FAIL_REPEAT;MISMAPPED_UNPLACEABLE	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	0/0:1,0:0.70:5.21	0/0:0,0:0.00:5.21	1/1:0,2:1.39:5.21	0/0:3,0:2.08:5.21	0/0:0,0:0.00:5.21	0/1:2,1:3.10:5.21	1/1:0,1:0.70:5.21	1/1:0,1:0.70:5.21	0/1:1,3:2.28:5.21	0/1:2,2:2.92:5.21	0/0:1,0:0.69:5.21	0/0:0,0:0.00:5.21	0/0:0,0:0.00:5.21	0/0:1,0:0.69:5.21	0/1:1,1:4.00:5.21	0/0:0,0:0.00:5.21	1/1:0,2:1.39:5.21	0/0:0,0:0.00:5.21	0/0:1,0:0.69:5.21	1/1:0,2:1.38:5.21	0/0:0,0:0.00:5.21	0/0:1,0:0.69:5.21	0/0:0,0:0.00:5.21	0/0:0,0:0.00:5.21	0/0:0,0:0.00:5.21	0/0:0,0:0.00:5.21	1/1:0,1:0.69:5.21	0/0:0,0:0.00:5.21	0/0:1,0:0.69:5.21	0/0:0,0:0.00:5.21	0/0:0,0:0.00:5.21	0/1:4,4:15.78:5.21	1/1:0,1:0.70:5.21	1/1:0,1:0.69:5.21	1/1:0,2:1.38:5.21	0/0:0,0:0.00:5.21	0/0:1,0:0.70:5.21	0/0:1,0:0.69:5.21	0/1:1,1:4.20:5.21	0/0:0,0:0.00:5.21	1/1:0,1:0.70:5.21	1/1:0,5:3.47:5.21	1/1:0,1:0.69:5.21	0/0:0,0:0.00:5.21	0/0:0,0:0.00:5.21	1/1:0,2:1.39:5.21	0/0:1,0:0.69:5.21	0/0:0,0:0.00:5.21	0/0:2,0:1.38:5.21	0/0:1,0:0.70:5.21	0/1:2,1:3.11:5.21	0/1:1,1:3.87:5.21	0/0:0,0:0.00:5.21	0/0:1,0:0.69:5.21	0/1:1,1:4.03:5.21	0/0:0,0:0.00:5.21	0/1:2,1:3.45:5.21	0/0:0,0:0.00:5.21	0/0:0,0:0.00:5.21	0/1:1,1:3.95:5.21	1/1:0,1:0.70:5.21	0/0:0,0:0.00:5.21	0/0:0,0:0.00:5.21	0/0:0,0:0.00:5.21	0/0:0,0:0.00:5.21	0/1:2,1:3.57:5.21	0/1:2,2:6.95:5.21	0/0:2,0:1.39:5.21	0/0:0,0:0.00:5.21	0/1:1,1:3.59:5.21	1/1:0,1:0.70:5.21	0/0:2,0:1.39:5.21	0/1:1,1:3.77:5.21	0/0:1,0:0.69:5.21	0/0:0,0:0.00:5.21	0/0:0,0:0.00:5.21	0/1:1,1:3.78:5.21	0/0:2,0:1.38:5.21
1	564591	var_1130512	C	G	.	PF_FAIL_REPEAT;MISMAPPED_UNPLACEABLE	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	0/0:0,0:0.00:2.83	0/0:0,0:0.00:2.83	0/0:0,0:0.00:2.83	0/0:0,0:0.00:2.83	0/0:0,0:0.00:2.83	0/0:0,0:0.00:2.83	0/0:0,0:0.00:2.83	0/0:0,0:0.00:2.83	0/0:1,0:0.70:2.83	0/0:3,0:2.08:2.83	1/1:0,1:0.69:2.83	0/0:0,0:0.00:2.83	0/1:1,1:4.14:2.83	0/1:2,1:2.67:2.83	0/0:0,0:0.00:2.83	0/0:0,0:0.00:2.83	0/0:0,0:0.00:2.83	0/0:0,0:0.00:2.83	0/0:0,0:0.00:2.83	0/0:0,0:0.00:2.83	0/0:0,0:0.00:2.83	0/0:0,0:0.00:2.83	0/0:0,0:0.00:2.83	0/0:0,0:0.00:2.83	1/1:0,1:0.69:2.83	0/0:0,0:0.00:2.83	0/0:0,0:0.00:2.83	0/0:0,0:0.00:2.83	0/0:0,0:0.00:2.83	0/0:0,0:0.00:2.83	0/1:2,1:3.50:2.83	0/1:4,8:13.01:2.83	0/0:0,0:0.00:2.83	0/0:0,0:0.00:2.83	0/1:1,5:2.00:2.83	0/0:0,0:0.00:2.83	0/0:0,0:0.00:2.83	0/0:0,0:0.00:2.83	1/1:0,1:0.69:2.83	0/0:0,0:0.00:2.83	0/0:0,0:0.00:2.83	0/1:1,1:3.33:2.83	0/0:0,0:0.00:2.83	0/0:0,0:0.00:2.83	0/0:0,0:0.00:2.83	0/0:0,0:0.00:2.83	0/0:0,0:0.00:2.83	0/0:0,0:0.00:2.83	0/0:0,0:0.00:2.83	0/0:0,0:0.00:2.83	0/0:0,0:0.00:2.83	0/0:1,0:0.70:2.83	0/0:0,0:0.00:2.83	0/0:3,0:2.08:2.83	0/0:1,0:0.70:2.83	0/0:0,0:0.00:2.83	0/0:0,0:0.00:2.83	0/0:1,0:0.69:2.83	1/1:0,1:0.69:2.83	0/0:0,0:0.00:2.83	0/0:0,0:0.00:2.83	0/0:0,0:0.00:2.83	1/1:0,1:0.70:2.83	0/0:0,0:0.00:2.83	0/0:0,0:0.00:2.83	0/0:0,0:0.00:2.83	0/0:0,0:0.00:2.83	0/0:0,0:0.00:2.83	0/0:0,0:0.00:2.83	0/0:0,0:0.00:2.83	0/0:0,0:0.00:2.83	0/0:0,0:0.00:2.83	0/0:0,0:0.00:2.83	0/0:0,0:0.00:2.83	0/0:0,0:0.00:2.83	0/0:1,0:0.70:2.83	0/0:0,0:0.00:2.83	0/0:0,0:0.00:2.83
1	564592	var_785486	G	C	.	PF_FAIL_REPEAT;MISMAPPED_UNPLACEABLE	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	0/0:0,0:0.00:0.76	0/0:1,0:0.70:0.76	0/1:1,1:4.15:0.76	0/0:1,0:0.69:0.76	0/0:0,0:0.00:0.76	0/0:1,0:0.69:0.76	0/0:0,0:0.00:0.76	0/0:0,0:0.00:0.76	1/1:0,1:0.70:0.76	0/0:1,0:0.69:0.76	0/0:1,0:0.69:0.76	0/0:0,0:0.00:0.76	0/0:0,0:0.00:0.76	1/1:0,1:0.69:0.76	0/0:0,0:0.00:0.76	0/0:0,0:0.00:0.76	0/0:0,0:0.00:0.76	0/0:0,0:0.00:0.76	0/0:0,0:0.00:0.76	0/0:0,0:0.00:0.76	0/0:0,0:0.00:0.76	0/0:1,0:0.69:0.76	0/0:1,0:0.69:0.76	0/0:1,0:0.69:0.76	1/1:0,1:0.69:0.76	0/0:0,0:0.00:0.76	0/0:0,0:0.00:0.76	0/0:0,0:0.00:0.76	0/0:0,0:0.00:0.76	0/0:1,0:0.69:0.76	0/0:0,0:0.00:0.76	0/1:1,4:2.66:0.76	0/0:0,0:0.00:0.76	0/0:0,0:0.00:0.76	0/0:0,0:0.00:0.76	0/0:0,0:0.00:0.76	1/1:0,1:0.70:0.76	0/0:0,0:0.00:0.76	0/0:0,0:0.00:0.76	1/1:0,2:1.38:0.76	0/0:1,0:0.70:0.76	0/1:2,1:2.65:0.76	1/1:0,1:0.69:0.76	0/0:0,0:0.00:0.76	0/0:0,0:0.00:0.76	0/0:0,0:0.00:0.76	0/0:1,0:0.69:0.76	0/0:0,0:0.00:0.76	0/0:1,0:0.69:0.76	0/0:0,0:0.00:0.76	0/0:0,0:0.00:0.76	0/0:0,0:0.00:0.76	0/0:0,0:0.00:0.76	0/0:0,0:0.00:0.76	0/0:0,0:0.00:0.76	0/0:3,0:2.08:0.76	0/0:0,0:0.00:0.76	0/0:0,0:0.00:0.76	0/0:0,0:0.00:0.76	0/0:0,0:0.00:0.76	0/0:0,0:0.00:0.76	0/0:0,0:0.00:0.76	0/0:0,0:0.00:0.76	0/0:0,0:0.00:0.76	0/0:0,0:0.00:0.76	0/0:0,0:0.00:0.76	0/0:0,0:0.00:0.76	0/0:0,0:0.00:0.76	0/0:0,0:0.00:0.76	0/0:0,0:0.00:0.76	0/0:1,0:0.70:0.76	0/0:0,0:0.00:0.76	0/0:0,0:0.00:0.76	0/0:0,0:0.00:0.76	0/0:0,0:0.00:0.76	0/0:2,0:1.38:0.76	0/0:0,0:0.00:0.76	0/0:0,0:0.00:0.76
1	564593	var_2777185	G	A	.	PF_FAIL_REPEAT;MISMAPPED_UNPLACEABLE	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	0/0:0,0:0.00:2.97	0/0:0,0:0.00:2.97	0/0:0,0:0.00:2.97	0/0:0,0:0.00:2.97	0/0:0,0:0.00:2.97	0/0:0,0:0.00:2.97	0/0:0,0:0.00:2.97	1/1:0,2:1.39:2.97	0/0:0,0:0.00:2.97	0/0:0,0:0.00:2.97	0/0:0,0:0.00:2.97	0/1:2,2:5.97:2.97	1/1:0,1:0.70:2.97	0/1:1,1:3.36:2.97	0/0:0,0:0.00:2.97	0/0:0,0:0.00:2.97	0/0:0,0:0.00:2.97	0/0:1,0:0.69:2.97	0/0:0,0:0.00:2.97	0/0:0,0:0.00:2.97	0/0:0,0:0.00:2.97	1/1:0,1:0.69:2.97	0/0:0,0:0.00:2.97	0/0:0,0:0.00:2.97	0/0:1,0:0.69:2.97	0/0:0,0:0.00:2.97	0/0:0,0:0.00:2.97	0/0:0,0:0.00:2.97	0/0:0,0:0.00:2.97	0/0:1,0:0.69:2.97	0/0:0,0:0.00:2.97	0/1:4,7:13.70:2.97	0/0:0,0:0.00:2.97	0/0:0,0:0.00:2.97	1/1:0,2:1.38:2.97	0/0:0,0:0.00:2.97	0/0:0,0:0.00:2.97	0/0:0,0:0.00:2.97	1/1:0,1:0.69:2.97	0/0:0,0:0.00:2.97	1/1:0,1:0.70:2.97	0/0:0,0:0.00:2.97	0/0:0,0:0.00:2.97	0/0:0,0:0.00:2.97	0/0:0,0:0.00:2.97	1/1:0,1:0.69:2.97	0/0:0,0:0.00:2.97	0/0:0,0:0.00:2.97	0/0:1,0:0.69:2.97	0/0:0,0:0.00:2.97	0/0:0,0:0.00:2.97	0/0:0,0:0.00:2.97	0/0:0,0:0.00:2.97	1/1:0,1:0.69:2.97	0/0:0,0:0.00:2.97	0/0:0,0:0.00:2.97	0/0:1,0:0.69:2.97	0/0:0,0:0.00:2.97	0/0:0,0:0.00:2.97	0/0:0,0:0.00:2.97	0/0:0,0:0.00:2.97	0/0:0,0:0.00:2.97	0/0:0,0:0.00:2.97	0/0:0,0:0.00:2.97	0/0:0,0:0.00:2.97	0/0:0,0:0.00:2.97	0/0:0,0:0.00:2.97	0/0:1,0:0.70:2.97	0/0:0,0:0.00:2.97	0/0:0,0:0.00:2.97	1/1:0,1:0.70:2.97	1/1:0,1:0.69:2.97	1/1:0,1:0.69:2.97	0/0:0,0:0.00:2.97	1/1:0,1:0.69:2.97	0/0:0,0:0.00:2.97	0/0:0,0:0.00:2.97	1/1:0,1:0.69:2.97
1	564595	var_4063930	G	C	.	PF_FAIL_REPEAT;MISMAPPED_UNPLACEABLE	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	0/0:0,0:0.00:3.37	0/1:2,1:3.21:3.37	1/1:0,1:0.69:3.37	0/0:0,0:0.00:3.37	0/0:0,0:0.00:3.37	0/0:0,0:0.00:3.37	1/1:0,1:0.70:3.37	1/1:0,1:0.70:3.37	1/1:0,1:0.70:3.37	0/0:2,0:1.38:3.37	0/0:0,0:0.00:3.37	0/1:2,1:2.64:3.37	1/1:0,1:0.70:3.37	0/0:1,0:0.69:3.37	0/0:0,0:0.00:3.37	0/0:0,0:0.00:3.37	0/0:0,0:0.00:3.37	0/0:0,0:0.00:3.37	0/0:0,0:0.00:3.37	0/0:0,0:0.00:3.37	0/0:0,0:0.00:3.37	0/0:0,0:0.00:3.37	0/0:0,0:0.00:3.37	0/0:0,0:0.00:3.37	0/1:3,3:11.12:3.37	0/0:0,0:0.00:3.37	1/1:0,1:0.69:3.37	1/1:0,1:0.69:3.37	0/0:0,0:0.00:3.37	0/0:0,0:0.00:3.37	0/0:0,0:0.00:3.37	0/1:1,1:4.74:3.37	0/0:0,0:0.00:3.37	1/1:0,1:0.69:3.37	0/1:1,1:4.78:3.37	0/0:0,0:0.00:3.37	0/0:0,0:0.00:3.37	0/0:0,0:0.00:3.37	1/1:0,1:0.69:3.37	0/0:0,0:0.00:3.37	0/0:0,0:0.00:3.37	0/0:3,0:2.08:3.37	0/0:0,0:0.00:3.37	0/0:0,0:0.00:3.37	0/0:0,0:0.00:3.37	0/0:1,0:0.69:3.37	0/0:0,0:0.00:3.37	0/0:0,0:0.00:3.37	0/0:0,0:0.00:3.37	0/0:0,0:0.00:3.37	0/0:0,0:0.00:3.37	0/0:0,0:0.00:3.37	0/0:0,0:0.00:3.37	0/0:1,0:0.69:3.37	0/0:1,0:0.70:3.37	0/0:0,0:0.00:3.37	0/0:0,0:0.00:3.37	0/0:0,0:0.00:3.37	0/0:0,0:0.00:3.37	0/0:1,0:0.69:3.37	0/0:0,0:0.00:3.37	0/0:0,0:0.00:3.37	0/0:0,0:0.00:3.37	0/0:0,0:0.00:3.37	0/0:0,0:0.00:3.37	1/1:0,1:0.69:3.37	1/1:0,1:0.70:3.37	0/0:1,0:0.70:3.37	0/0:1,0:0.69:3.37	0/0:0,0:0.00:3.37	0/0:0,0:0.00:3.37	0/0:0,0:0.00:3.37	0/0:0,0:0.00:3.37	1/1:0,1:0.69:3.37	0/0:0,0:0.00:3.37	0/0:0,0:0.00:3.37	0/0:0,0:0.00:3.37	0/0:1,0:0.69:3.37
1	564597	var_4193755	T	C	.	PF_FAIL_REPEAT	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	1/1:913,0:413.58:183.97	1/1:976,1:584.75:183.97	1/1:2225,0:2592.44:183.97	1/1:722,0:581.29:183.97	1/1:1864,1:2140.26:183.97	1/1:1410,1:1529.51:183.97	1/1:1414,2:1430.01:183.97	1/1:1099,0:681.32:183.97	1/1:1500,0:1880.75:183.97	1/1:1706,2:2476.46:183.97	1/1:1446,0:1474.39:183.97	1/1:831,0:836.08:183.97	0/0:526,0:130.06:183.97	1/1:1043,0:1261.80:183.97	1/1:1505,0:1400.94:183.97	0/0:520,0:84.05:183.97	1/1:1312,1:828.56:183.97	1/1:551,0:287.00:183.97	1/1:993,1:671.23:183.97	1/1:1456,0:1238.40:183.97	1/1:943,0:530.25:183.97	1/1:1235,0:1206.97:183.97	1/1:2120,1:2199.21:183.97	1/1:1678,0:1539.65:183.97	1/1:4699,1:8295.18:183.97	1/1:1072,0:1202.89:183.97	1/1:830,0:529.83:183.97	1/1:1114,0:692.13:183.97	1/1:1544,3:1725.78:183.97	1/1:1027,2:674.27:183.97	1/1:967,0:289.72:183.97	1/1:5559,3:8349.92:183.97	1/1:1294,0:970.61:183.97	1/1:1818,0:2197.44:183.97	1/1:2355,2:1430.91:183.97	1/1:1865,0:2176.21:183.97	1/1:815,0:626.05:183.97	1/1:685,0:387.53:183.97	1/1:2681,0:3510.32:183.97	1/1:679,0:475.84:183.97	1/1:1463,0:1188.02:183.97	1/1:745,0:667.69:183.97	1/1:1253,1:804.26:183.97	1/1:315,0:342.76:183.97	1/1:1446,0:1414.24:183.97	1/1:1317,0:1332.09:183.97	1/1:1036,1:894.14:183.97	1/1:1273,0:1573.10:183.97	1/1:1683,0:1926.46:183.97	1/1:1789,0:1747.81:183.97	1/1:1264,0:1199.75:183.97	1/1:1127,0:876.66:183.97	1/1:1139,0:876.04:183.97	1/1:935,0:610.72:183.97	1/1:1132,0:706.59:183.97	1/1:1361,0:889.42:183.97	1/1:1258,0:759.61:183.97	1/1:1207,0:825.37:183.97	1/1:623,0:339.73:183.97	1/1:727,0:191.90:183.97	1/1:1597,0:1348.66:183.97	0/0:4,0:2.77:183.97	1/1:761,0:602.97:183.97	1/1:1357,0:1333.51:183.97	1/1:1144,0:952.60:183.97	1/1:1491,0:993.23:183.97	1/1:1350,2:1364.58:183.97	1/1:1710,0:1640.76:183.97	1/1:2008,0:3053.95:183.97	1/1:896,1:744.62:183.97	1/1:957,0:559.45:183.97	1/1:713,0:457.45:183.97	1/1:1145,4:1034.40:183.97	1/1:1193,0:746.89:183.97	1/1:600,1:227.70:183.97	1/1:1777,2:2054.13:183.97	1/1:1469,1:1659.21:183.97	1/1:852,0:637.19:183.97
1	564600	var_4458401	C	A	.	PF_FAIL_REPEAT	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	1/1:941,0:454.57:185.07	1/1:1006,0:627.60:185.07	1/1:2220,3:2596.47:185.07	1/1:725,0:586.71:185.07	1/1:1927,0:2270.94:185.07	1/1:1415,1:1539.92:185.07	1/1:1445,0:1482.59:185.07	1/1:1109,0:697.53:185.07	1/1:1530,0:1948.59:185.07	1/1:1730,5:2546.17:185.07	1/1:1435,0:1452.25:185.07	1/1:843,1:864.91:185.07	0/0:536,0:122.51:185.07	1/1:1075,4:1348.68:185.07	1/1:1531,0:1451.29:185.07	0/0:521,0:83.23:185.07	1/1:1314,1:831.81:185.07	1/1:551,0:287.00:185.07	1/1:1013,0:699.53:185.07	1/1:1464,1:1258.64:185.07	1/1:958,2:563.63:185.07	1/1:1268,0:1272.56:185.07	1/1:2156,0:2267.07:185.07	1/1:1714,0:1608.99:185.07	1/1:4738,0:8397.41:185.07	1/1:1086,0:1232.64:185.07	1/1:844,0:552.82:185.07	1/1:1114,1:697.53:185.07	1/1:1569,0:1764.72:185.07	1/1:1039,1:689.47:185.07	1/1:986,0:314.52:185.07	1/1:5618,10:8527.19:185.07	1/1:1303,0:986.37:185.07	1/1:1843,0:2252.77:185.07	1/1:2366,5:1462.94:185.07	1/1:1906,0:2265.40:185.07	1/1:829,0:650.86:185.07	1/1:716,0:436.60:185.07	1/1:2718,1:3601.54:185.07	1/1:693,0:499.72:185.07	1/1:1468,1:1202.56:185.07	1/1:761,1:702.85:185.07	1/1:1270,0:826.66:185.07	1/1:323,0:359.47:185.07	1/1:1469,0:1459.85:185.07	1/1:1355,4:1426.48:185.07	1/1:1057,0:928.20:185.07	1/1:1299,0:1631.41:185.07	1/1:1687,0:1935.04:185.07	1/1:1843,0:1855.25:185.07	1/1:1276,0:1223.16:185.07	1/1:1127,0:876.66:185.07	1/1:1112,0:828.69:185.07	1/1:972,1:677.65:185.07	1/1:1146,0:729.37:185.07	1/1:1380,0:920.91:185.07	1/1:1265,0:770.83:185.07	1/1:1236,0:874.45:185.07	1/1:629,0:349.00:185.07	1/1:715,1:182.21:185.07	1/1:1611,1:1380.05:185.07	0/0:1,0:0.69:185.07	1/1:784,0:644.42:185.07	1/1:1377,0:1373.25:185.07	1/1:1163,0:987.51:185.07	1/1:1527,0:1053.54:185.07	1/1:1391,1:1442.69:185.07	1/1:1747,0:1713.57:185.07	1/1:2033,0:3117.07:185.07	1/1:906,0:757.91:185.07	1/1:963,1:574.24:185.07	1/1:721,1:475.53:185.07	1/1:1157,2:1049.24:185.07	1/1:1200,0:758.27:185.07	1/1:613,0:240.56:185.07	1/1:1795,1:2088.25:185.07	1/1:1487,1:1697.54:185.07	1/1:865,0:659.96:185.07
1	564603	var_1394327	G	C	.	PF_FAIL_REPEAT;MISMAPPED_UNPLACEABLE	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	0/0:0,0:0.00:2.28	1/1:0,6:4.16:2.28	0/0:2,0:1.39:2.28	0/1:1,2:2.71:2.28	0/0:1,0:0.70:2.28	1/1:2,16:2.83:2.28	0/0:2,0:1.39:2.28	0/1:2,1:3.31:2.28	0/0:5,0:3.47:2.28	0/0:2,0:1.38:2.28	1/1:0,16:11.09:2.28	0/1:4,1:1.26:2.28	0/0:0,0:0.00:2.28	0/0:0,0:0.00:2.28	0/0:0,0:0.00:2.28	0/0:0,0:0.00:2.28	0/0:0,0:0.00:2.28	0/1:1,3:2.03:2.28	1/1:0,4:2.77:2.28	1/1:0,11:7.62:2.28	1/1:0,3:2.08:2.28	1/1:1,15:5.95:2.28	1/1:0,1:0.69:2.28	0/0:1,0:0.69:2.28	0/1:2,2:7.91:2.28	1/1:0,1:0.69:2.28	1/1:0,7:4.86:2.28	1/1:0,1:0.69:2.28	0/1:2,11:0.77:2.28	0/0:0,0:0.00:2.28	0/0:0,0:0.00:2.28	0/1:4,2:7.40:2.28	1/1:0,1:0.70:2.28	0/1:1,1:3.91:2.28	0/1:4,5:15.24:2.28	0/0:1,0:0.69:2.28	1/1:0,6:4.16:2.28	1/1:0,4:2.77:2.28	0/1:1,3:2.81:2.28	0/1:2,7:2.72:2.28	0/0:1,0:0.70:2.28	1/1:0,1:0.69:2.28	0/0:1,0:0.69:2.28	0/0:0,0:0.00:2.28	1/1:0,12:8.31:2.28	0/1:1,2:3.10:2.28	0/1:1,5:0.94:2.28	1/1:0,1:0.70:2.28	0/0:2,0:1.38:2.28	0/0:0,0:0.00:2.28	1/1:1,9:1.74:2.28	0/1:1,5:1.09:2.28	1/1:0,1:0.70:2.28	0/0:2,0:1.38:2.28	0/0:0,0:0.00:2.28	1/1:0,1:0.70:2.28	0/0:1,0:0.69:2.28	1/1:0,2:1.39:2.28	0/1:1,6:0.05:2.28	1/1:0,1:0.69:2.28	0/1:1,1:4.15:2.28	0/1:1,1:3.44:2.28	0/1:2,4:4.84:2.28	0/0:0,0:0.00:2.28	1/1:1,15:5.87:2.28	0/1:1,4:2.17:2.28	0/0:1,0:0.70:2.28	0/1:2,10:1.97:2.28	0/1:1,1:3.70:2.28	1/1:1,9:1.95:2.28	1/1:0,1:0.70:2.28	1/1:0,5:3.47:2.28	0/0:3,0:2.08:2.28	0/0:0,0:0.00:2.28	1/1:0,3:2.08:2.28	0/1:1,1:3.95:2.28	0/1:1,2:3.09:2.28	0/1:2,8:2.39:2.28
1	564605	var_1447675	C	G	.	MISMAPPED_UNPLACEABLE	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	0/0:0,0:0.00:1.95	0/0:0,0:0.00:1.95	0/0:0,0:0.00:1.95	0/0:0,0:0.00:1.95	0/0:2,0:1.38:1.95	0/0:1,0:0.69:1.95	0/0:2,0:1.39:1.95	0/0:1,0:0.70:1.95	0/0:0,0:0.00:1.95	0/0:0,0:0.00:1.95	0/0:0,0:0.00:1.95	0/1:1,3:1.95:1.95	0/0:0,0:0.00:1.95	0/0:0,0:0.00:1.95	0/0:0,0:0.00:1.95	0/0:1,0:0.69:1.95	0/0:0,0:0.00:1.95	0/0:0,0:0.00:1.95	0/0:0,0:0.00:1.95	0/0:0,0:0.00:1.95	0/0:0,0:0.00:1.95	0/0:1,0:0.69:1.95	0/0:0,0:0.00:1.95	1/1:0,1:0.69:1.95	0/0:2,0:1.39:1.95	0/0:0,0:0.00:1.95	0/0:0,0:0.00:1.95	0/0:0,0:0.00:1.95	0/0:1,0:0.69:1.95	0/0:0,0:0.00:1.95	0/0:0,0:0.00:1.95	0/1:1,6:1.28:1.95	0/0:0,0:0.00:1.95	0/0:0,0:0.00:1.95	1/1:0,6:4.16:1.95	0/0:0,0:0.00:1.95	0/0:0,0:0.00:1.95	0/0:0,0:0.00:1.95	0/0:0,0:0.00:1.95	1/1:0,1:0.69:1.95	0/0:1,0:0.70:1.95	1/1:0,1:0.69:1.95	0/0:1,0:0.69:1.95	0/0:0,0:0.00:1.95	0/0:0,0:0.00:1.95	1/1:0,1:0.69:1.95	0/0:0,0:0.00:1.95	0/0:0,0:0.00:1.95	1/1:0,1:0.69:1.95	0/0:0,0:0.00:1.95	0/0:0,0:0.00:1.95	0/0:1,0:0.70:1.95	0/0:0,0:0.00:1.95	0/0:0,0:0.00:1.95	0/0:0,0:0.00:1.95	0/0:1,0:0.70:1.95	0/0:0,0:0.00:1.95	0/1:1,1:4.03:1.95	0/0:0,0:0.00:1.95	0/0:0,0:0.00:1.95	0/0:0,0:0.00:1.95	1/1:0,1:0.69:1.95	0/0:0,0:0.00:1.95	0/0:0,0:0.00:1.95	0/0:1,0:0.69:1.95	0/0:0,0:0.00:1.95	0/0:0,0:0.00:1.95	0/0:1,0:0.70:1.95	0/0:0,0:0.00:1.95	0/0:0,0:0.00:1.95	0/0:0,0:0.00:1.95	0/0:0,0:0.00:1.95	0/0:0,0:0.00:1.95	0/0:0,0:0.00:1.95	0/0:0,0:0.00:1.95	0/0:0,0:0.00:1.95	0/0:0,0:0.00:1.95	0/0:0,0:0.00:1.95
1	564607	var_1986817	T	C	.	PF_FAIL_REPEAT	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	1/1:929,0:436.90:183.65	1/1:968,1:572.06:183.65	1/1:2159,1:2456.20:183.65	1/1:703,0:547.35:183.65	1/1:1872,1:2157.43:183.65	1/1:1362,0:1425.41:183.65	1/1:1477,2:1557.49:183.65	1/1:1087,2:672.08:183.65	1/1:1527,0:1941.78:183.65	1/1:1745,0:2562.91:183.65	1/1:1403,0:1388.31:183.65	1/1:821,0:816.13:183.65	0/0:542,0:117.88:183.65	1/1:1094,1:1380.27:183.65	1/1:1482,1:1362.15:183.65	0/0:482,0:114.24:183.65	1/1:1276,1:770.59:183.65	1/1:513,0:230.79:183.65	1/1:954,0:601.76:183.65	1/1:1408,1:1155.95:183.65	1/1:927,0:505.45:183.65	1/1:1215,0:1167.65:183.65	1/1:2091,0:2134.83:183.65	1/1:1608,1:1412.59:183.65	1/1:4610,3:8059.71:183.65	1/1:1065,1:1192.94:183.65	1/1:791,0:467.04:183.65	1/1:1096,0:663.16:183.65	1/1:1521,0:1663.60:183.65	1/1:997,0:615.54:183.65	1/1:972,0:296.22:183.65	1/1:5383,2:7908.01:183.65	1/1:1286,1:962.08:183.65	1/1:1842,0:2250.54:183.65	1/1:2221,2:1220.28:183.65	1/1:1859,0:2163.23:183.65	1/1:800,0:599.73:183.65	1/1:688,0:392.22:183.65	1/1:2677,0:3501.09:183.65	1/1:692,0:498.01:183.65	1/1:1399,0:1073.65:183.65	1/1:719,1:623.71:183.65	1/1:1276,0:836.56:183.65	1/1:316,0:344.83:183.65	1/1:1410,1:1348.88:183.65	1/1:1355,1:1414.14:183.65	1/1:1024,1:871.96:183.65	1/1:1277,0:1582.03:183.65	1/1:1622,0:1796.91:183.65	1/1:1851,1:1876.82:183.65	1/1:1171,0:1022.27:183.65	1/1:1084,0:801.19:183.65	1/1:1059,1:742.93:183.65	1/1:945,0:627.27:183.65	1/1:1121,1:694.22:183.65	1/1:1370,0:904.30:183.65	1/1:1260,0:762.82:183.65	1/1:1201,1:820.72:183.65	1/1:596,0:298.76:183.65	1/1:708,0:168.22:183.65	1/1:1569,0:1297.34:183.65	1/1:479,0:170.78:183.65	1/1:746,0:576.31:183.65	1/1:1382,0:1383.23:183.65	1/1:1095,0:864.03:183.65	1/1:1486,0:984.92:183.65	1/1:1393,3:1455.39:183.65	1/1:1687,0:1595.90:183.65	1/1:2076,0:3226.37:183.65	1/1:903,0:752.41:183.65	1/1:957,0:559.45:183.65	1/1:705,1:449.34:183.65	1/1:1150,1:1031.54:183.65	1/1:1176,0:719.42:183.65	1/1:569,1:186.20:183.65	1/1:1755,0:1997.04:183.65	1/1:1504,0:1728.77:183.65	1/1:822,0:585.43:183.65
1	564608	var_3140982	C	A	.	PF_FAIL_REPEAT	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	1/1:921,0:425.20:179.00	1/1:947,0:533.78:179.00	1/1:2154,0:2440.00:179.00	1/1:703,0:547.35:179.00	0/0:7,0:4.86:179.00	1/1:1345,0:1390.78:179.00	1/1:1472,0:1537.47:179.00	1/1:1083,1:660.97:179.00	1/1:1512,0:1907.82:179.00	1/1:1737,0:2543.19:179.00	1/1:1395,1:1377.70:179.00	1/1:814,2:810.98:179.00	0/0:539,1:114.68:179.00	1/1:1082,2:1357.35:179.00	1/1:1470,0:1333.86:179.00	0/0:483,0:113.47:179.00	1/1:1260,0:739.59:179.00	1/1:512,0:229.35:179.00	1/1:954,0:601.76:179.00	1/1:1386,0:1110.77:179.00	1/1:921,1:501.52:179.00	1/1:1200,0:1138.38:179.00	1/1:2061,1:2080.11:179.00	1/1:1597,0:1386.52:179.00	1/1:4550,3:7895.46:179.00	0/0:4,0:2.77:179.00	1/1:781,0:451.24:179.00	1/1:1086,0:647.19:179.00	1/1:1508,1:1641.70:179.00	1/1:996,0:613.92:179.00	1/1:967,0:289.72:179.00	1/1:5389,7:7945.61:179.00	1/1:1288,0:960.14:179.00	1/1:1839,1:2249.18:179.00	1/1:2205,4:1205.50:179.00	0/0:65,0:45.05:179.00	1/1:797,0:594.50:179.00	1/1:676,1:378.52:179.00	1/1:2647,0:3432.07:179.00	1/1:691,0:496.29:179.00	1/1:1402,0:1078.94:179.00	1/1:708,0:598.65:179.00	1/1:1267,1:827.22:179.00	1/1:313,0:338.61:179.00	1/1:1402,1:1333.30:179.00	1/1:1361,2:1430.85:179.00	1/1:1011,0:842.99:179.00	0/0:8,0:5.54:179.00	1/1:1611,0:1773.78:179.00	0/0:22,1:10.43:179.00	1/1:1153,0:988.76:179.00	1/1:1065,0:768.39:179.00	1/1:1050,0:722.46:179.00	1/1:937,1:619.21:179.00	1/1:1105,0:663.15:179.00	1/1:1375,1:918.16:179.00	1/1:1245,0:738.87:179.00	1/1:1206,1:829.11:179.00	1/1:595,0:297.27:179.00	1/1:709,1:174.78:179.00	1/1:1558,0:1277.31:179.00	1/1:478,0:169.43:179.00	1/1:743,0:571.01:179.00	1/1:0,0:0.00:179.00	1/1:1085,0:846.22:179.00	1/1:1469,1:962.44:179.00	1/1:1395,0:1445.62:179.00	1/1:1676,0:1574.56:179.00	1/1:2074,0:3221.26:179.00	1/1:896,0:739.64:179.00	1/1:950,0:548.42:179.00	1/1:698,1:438.00:179.00	1/1:1145,3:1030.63:179.00	1/1:1162,0:696.99:179.00	1/1:561,0:170.73:179.00	1/1:1739,2:1972.92:179.00	1/1:1512,2:1755.60:179.00	1/1:812,0:568.41:179.00
1	564612	var_2625789	C	G	.	PF_FAIL_REPEAT;MISMAPPED_UNPLACEABLE	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	0/0:2,0:1.39:0.57	0/0:0,0:0.00:0.57	0/0:1,0:0.69:0.57	0/0:0,0:0.00:0.57	0/0:0,0:0.00:0.57	0/0:1,0:0.69:0.57	0/0:1,0:0.70:0.57	0/0:0,0:0.00:0.57	0/0:0,0:0.00:0.57	0/0:2,0:1.38:0.57	1/1:0,1:0.69:0.57	0/0:1,0:0.69:0.57	0/0:0,0:0.00:0.57	0/0:0,0:0.00:0.57	0/0:1,0:0.69:0.57	0/0:0,0:0.00:0.57	0/0:0,0:0.00:0.57	0/0:0,0:0.00:0.57	0/0:1,0:0.69:0.57	0/0:1,0:0.70:0.57	1/1:0,1:0.69:0.57	0/0:1,0:0.69:0.57	0/0:1,0:0.69:0.57	0/0:1,0:0.69:0.57	0/0:0,0:0.00:0.57	0/0:0,0:0.00:0.57	0/0:0,0:0.00:0.57	1/1:0,1:0.69:0.57	0/0:1,0:0.69:0.57	0/0:0,0:0.00:0.57	0/0:0,0:0.00:0.57	0/1:6,8:20.47:0.57	0/0:1,0:0.70:0.57	0/1:1,1:3.91:0.57	0/0:2,0:1.38:0.57	0/0:0,0:0.00:0.57	0/0:0,0:0.00:0.57	0/0:0,0:0.00:0.57	1/1:0,1:0.69:0.57	1/1:0,1:0.69:0.57	0/0:1,0:0.70:0.57	0/1:1,3:1.95:0.57	0/0:1,0:0.69:0.57	0/0:0,0:0.00:0.57	0/0:0,0:0.00:0.57	0/0:1,0:0.69:0.57	0/0:1,0:0.69:0.57	0/0:0,0:0.00:0.57	0/0:0,0:0.00:0.57	0/0:0,0:0.00:0.57	0/0:0,0:0.00:0.57	0/0:0,0:0.00:0.57	0/0:0,0:0.00:0.57	0/0:0,0:0.00:0.57	0/0:0,0:0.00:0.57	0/0:0,0:0.00:0.57	0/0:0,0:0.00:0.57	0/0:0,0:0.00:0.57	0/0:1,0:0.69:0.57	0/0:0,0:0.00:0.57	0/0:0,0:0.00:0.57	0/0:0,0:0.00:0.57	0/0:0,0:0.00:0.57	0/0:0,0:0.00:0.57	0/0:0,0:0.00:0.57	0/0:1,0:0.69:0.57	0/1:2,1:3.13:0.57	1/1:0,1:0.70:0.57	0/0:1,0:0.69:0.57	0/0:0,0:0.00:0.57	1/1:0,1:0.70:0.57	0/0:0,0:0.00:0.57	0/0:0,0:0.00:0.57	0/0:1,0:0.69:0.57	0/0:0,0:0.00:0.57	0/0:0,0:0.00:0.57	0/0:1,0:0.70:0.57	0/0:1,0:0.69:0.57
1	564615	var_3616701	A	C	.	PF_FAIL_REPEAT	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	1/1:930,0:438.37:178.02	1/1:951,0:540.03:178.02	1/1:2180,0:2495.55:178.02	1/1:671,0:491.35:178.02	0/0:8,0:5.55:178.02	1/1:1317,2:1343.86:178.02	1/1:1464,0:1521.15:178.02	1/1:1079,0:649.19:178.02	1/1:1485,1:1852.13:178.02	1/1:1701,0:2454.94:178.02	1/1:1332,2:1258.91:178.02	1/1:792,4:774.66:178.02	0/0:534,0:124.03:178.02	1/1:1066,0:1312.79:178.02	1/1:1414,0:1228.28:178.02	0/0:477,0:117.99:178.02	1/1:1266,0:749.11:178.02	1/1:494,0:203.73:178.02	1/1:971,0:629.57:178.02	1/1:1331,2:1023.13:178.02	1/1:907,0:474.84:178.02	1/1:1139,0:1021.30:178.02	1/1:1992,0:1937.34:178.02	1/1:1539,0:1279.38:178.02	1/1:4510,1:7776.80:178.02	0/0:3,0:2.08:178.02	1/1:719,1:361.33:178.02	1/1:1034,0:565.65:178.02	1/1:1464,2:1555.27:178.02	1/1:958,0:553.38:178.02	1/1:963,0:284.55:178.02	1/1:5302,2:7708.88:178.02	1/1:1276,1:944.71:178.02	1/1:1843,0:2252.77:178.02	1/1:2031,2:935.62:178.02	0/0:61,0:42.28:178.02	1/1:747,0:509.04:178.02	1/1:659,1:352.44:178.02	1/1:2445,0:2976.40:178.02	1/1:663,0:448.91:178.02	1/1:1403,0:1080.71:178.02	1/1:670,2:538.51:178.02	1/1:1251,0:795.50:178.02	1/1:317,0:346.92:178.02	1/1:1352,2:1241.59:178.02	1/1:1280,3:1272.04:178.02	1/1:957,1:750.72:178.02	0/0:5,0:3.47:178.02	1/1:1621,1:1800.09:178.02	0/0:23,0:15.95:178.02	1/1:1139,2:972.58:178.02	1/1:1024,0:698.75:178.02	1/1:1039,0:704.00:178.02	1/1:895,2:555.31:178.02	1/1:1077,0:618.80:178.02	1/1:1379,0:919.25:178.02	1/1:1236,1:730.12:178.02	1/1:1219,1:851.01:178.02	1/1:570,3:273.36:178.02	1/1:702,0:160.85:178.02	1/1:1508,1:1192.79:178.02	1/1:476,0:166.74:178.02	1/1:747,2:587.08:178.02	0/0:0,0:0.00:178.02	1/1:1057,0:796.85:178.02	1/1:1492,0:994.89:178.02	1/1:1385,2:1435.04:178.02	1/1:1586,0:1402.68:178.02	1/1:2043,1:3147.50:178.02	1/1:865,2:692.98:178.02	1/1:926,2:520.84:178.02	1/1:691,0:421.80:178.02	1/1:1100,0:933.02:178.02	1/1:1168,0:706.59:178.02	1/1:537,0:140.10:178.02	1/1:1732,1:1953.41:178.02	1/1:1399,0:1507.11:178.02	1/1:796,1:546.45:178.02
1	564618	var_3146524	A	G	.	PF_FAIL_REPEAT;MISMAPPED_UNPLACEABLE	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	0/0:0,0:0.00:6.27	0/0:0,0:0.00:6.27	0/1:4,1:2.07:6.27	0/0:0,0:0.00:6.27	0/0:0,0:0.00:6.27	0/0:0,0:0.00:6.27	0/0:0,0:0.00:6.27	0/0:0,0:0.00:6.27	0/0:1,0:0.70:6.27	0/0:0,0:0.00:6.27	0/0:0,0:0.00:6.27	0/1:2,1:2.64:6.27	0/0:0,0:0.00:6.27	0/0:1,0:0.69:6.27	0/0:0,0:0.00:6.27	0/0:0,0:0.00:6.27	1/1:0,1:0.69:6.27	0/0:0,0:0.00:6.27	0/0:0,0:0.00:6.27	0/0:0,0:0.00:6.27	0/0:0,0:0.00:6.27	0/0:0,0:0.00:6.27	0/0:1,0:0.69:6.27	0/0:0,0:0.00:6.27	0/1:1,1:4.30:6.27	0/0:0,0:0.00:6.27	0/0:0,0:0.00:6.27	0/0:2,0:1.38:6.27	1/1:0,2:1.39:6.27	0/0:1,0:0.69:6.27	0/0:0,0:0.00:6.27	0/1:11,5:14.75:6.27	0/1:2,1:3.34:6.27	1/1:0,1:0.69:6.27	0/1:6,3:10.47:6.27	0/0:0,0:0.00:6.27	0/0:1,0:0.70:6.27	0/0:0,0:0.00:6.27	0/0:2,0:1.38:6.27	0/0:0,0:0.00:6.27	0/0:4,0:2.77:6.27	0/0:0,0:0.00:6.27	0/0:0,0:0.00:6.27	0/0:0,0:0.00:6.27	0/0:0,0:0.00:6.27	0/0:0,0:0.00:6.27	0/0:0,0:0.00:6.27	0/0:0,0:0.00:6.27	0/0:3,0:2.08:6.27	0/0:0,0:0.00:6.27	0/0:0,0:0.00:6.27	0/0:0,0:0.00:6.27	0/1:1,1:3.89:6.27	0/0:1,0:0.69:6.27	0/0:0,0:0.00:6.27	0/0:0,0:0.00:6.27	0/0:0,0:0.00:6.27	0/0:0,0:0.00:6.27	0/0:0,0:0.00:6.27	0/0:0,0:0.00:6.27	0/0:2,0:1.38:6.27	0/0:0,0:0.00:6.27	0/0:1,0:0.70:6.27	0/0:0,0:0.00:6.27	0/0:0,0:0.00:6.27	0/0:0,0:0.00:6.27	0/0:1,0:0.70:6.27	0/0:0,0:0.00:6.27	0/0:0,0:0.00:6.27	0/0:0,0:0.00:6.27	0/0:0,0:0.00:6.27	0/0:0,0:0.00:6.27	0/0:0,0:0.00:6.27	0/0:0,0:0.00:6.27	0/0:0,0:0.00:6.27	0/0:0,0:0.00:6.27	0/0:0,0:0.00:6.27	0/0:0,0:0.00:6.27
1	564619	var_2279613	T	C	.	PF_FAIL_REPEAT	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	1/1:1051,1:628.81:182.25	1/1:995,0:609.84:182.25	1/1:2294,1:2748.30:182.25	1/1:661,0:474.15:182.25	1/1:1905,1:2228.58:182.25	1/1:1349,1:1404.08:182.25	1/1:1335,0:1264.33:182.25	1/1:1186,1:830.70:182.25	1/1:1425,2:1723.26:182.25	1/1:1624,1:2273.77:182.25	1/1:1418,0:1418.18:182.25	1/1:871,1:921.81:182.25	0/0:588,0:80.30:182.25	1/1:938,2:1044.43:182.25	1/1:1390,0:1183.70:182.25	0/0:536,0:70.51:182.25	1/1:1357,1:902.41:182.25	0/0:2,0:1.39:182.25	1/1:964,1:623.32:182.25	1/1:1470,0:1264.33:182.25	1/1:974,0:579.06:182.25	1/1:1213,0:1163.74:182.25	1/1:1951,1:1862.61:182.25	1/1:1504,0:1215.78:182.25	1/1:4928,0:8927.74:182.25	1/1:959,0:969.67:182.25	1/1:723,1:367.31:182.25	1/1:1070,0:621.83:182.25	1/1:1415,1:1450.97:182.25	1/1:1000,2:630.27:182.25	1/1:1187,0:598.06:182.25	1/1:5010,5:7015.69:182.25	1/1:1264,0:918.55:182.25	1/1:1773,0:2098.71:182.25	1/1:2386,0:1469.10:182.25	1/1:1838,0:2117.96:182.25	1/1:757,0:525.87:182.25	1/1:650,0:333.83:182.25	1/1:2735,0:3635.47:182.25	1/1:689,0:492.87:182.25	1/1:1418,2:1117.57:182.25	1/1:510,0:264.95:182.25	1/1:1322,0:913.39:182.25	1/1:303,0:318.06:182.25	1/1:1397,0:1318.29:182.25	1/1:1185,0:1073.84:182.25	1/1:989,1:808.06:182.25	1/1:1152,1:1313.81:182.25	1/1:1688,0:1937.19:182.25	1/1:1674,0:1524.50:182.25	1/1:1092,1:882.50:182.25	1/1:1035,0:717.28:182.25	1/1:1129,0:858.42:182.25	1/1:867,1:506.31:182.25	1/1:1111,0:672.75:182.25	1/1:1457,1:1056.74:182.25	1/1:1366,0:936.99:182.25	1/1:1323,0:1025.71:182.25	1/1:608,0:316.83:182.25	1/1:801,1:294.02:182.25	1/1:1478,0:1134.03:182.25	1/1:450,1:137.38:182.25	1/1:690,0:479.48:182.25	1/1:1440,1:1505.55:182.25	1/1:1007,0:710.54:182.25	1/1:1627,0:1225.47:182.25	1/1:1278,2:1222.48:182.25	0/0:33,0:22.87:182.25	1/1:1848,2:2666.97:182.25	1/1:916,1:781.26:182.25	1/1:886,0:449.93:182.25	1/1:713,0:457.45:182.25	1/1:1059,1:863.33:182.25	1/1:1289,0:906.43:182.25	1/1:600,1:227.70:182.25	1/1:1773,1:2040.91:182.25	1/1:1377,0:1461.64:182.25	1/1:838,0:612.91:182.25
1	564620	var_2946160	A	G	.	PF_FAIL_REPEAT	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	1/1:909,0:407.79:176.91	1/1:908,0:473.77:176.91	1/1:2153,0:2437.86:176.91	1/1:652,0:458.80:176.91	0/0:7,0:4.86:176.91	1/1:1281,1:1267.51:176.91	1/1:1377,1:1351.89:176.91	1/1:1058,0:615.83:176.91	1/1:1426,2:1725.46:176.91	1/1:1642,2:2321.27:176.91	1/1:1287,3:1176.77:176.91	1/1:790,0:755.04:176.91	0/0:526,0:130.06:176.91	1/1:989,4:1159.90:176.91	1/1:1389,1:1187.24:176.91	0/0:456,0:133.17:176.91	1/1:1256,1:738.81:176.91	1/1:480,0:184.26:176.91	1/1:932,0:566.24:176.91	1/1:1293,2:956.88:176.91	1/1:892,0:452.18:176.91	1/1:1116,1:983.12:176.91	1/1:1941,0:1837.51:176.91	1/1:1497,0:1203.16:176.91	1/1:4487,1:7714.25:176.91	0/0:3,0:2.08:176.91	1/1:693,1:323.06:176.91	1/1:1012,0:531.94:176.91	1/1:1401,1:1422.77:176.91	1/1:949,0:539.26:176.91	1/1:981,1:313.54:176.91	1/1:5165,10:7409.48:176.91	1/1:1234,1:872.63:176.91	1/1:1753,0:2055.19:176.91	1/1:2011,3:911.72:176.91	0/0:57,1:34.83:176.91	1/1:729,0:479.08:176.91	1/1:634,0:309.90:176.91	1/1:2506,1:3117.90:176.91	1/1:645,0:419.06:176.91	1/1:1369,0:1021.04:176.91	1/1:707,1:601.54:176.91	1/1:1240,1:783.09:176.91	1/1:303,0:318.06:176.91	1/1:1327,1:1189.52:176.91	1/1:1226,1:1157.72:176.91	1/1:923,0:685.90:176.91	0/0:6,0:4.16:176.91	1/1:1588,1:1730.97:176.91	0/0:20,1:9.04:176.91	1/1:1096,0:884.51:176.91	1/1:1010,0:675.36:176.91	1/1:987,0:618.28:176.91	1/1:852,1:482.83:176.91	1/1:1056,1:591.44:176.91	1/1:1362,1:896.64:176.91	1/1:1229,0:713.53:176.91	1/1:1223,0:852.37:176.91	1/1:562,0:248.92:176.91	1/1:682,1:136.67:176.91	1/1:1457,0:1097.11:176.91	1/1:462,1:152.98:176.91	1/1:728,0:544.71:176.91	0/0:1,0:0.69:176.91	1/1:1013,0:720.77:176.91	1/1:1519,0:1040.06:176.91	1/1:1281,2:1228.32:176.91	1/1:1551,0:1337.21:176.91	1/1:1959,0:2931.13:176.91	1/1:843,0:644.71:176.91	1/1:906,0:480.22:176.91	1/1:680,0:404.24:176.91	1/1:1045,1:838.12:176.91	1/1:1130,0:646.35:176.91	1/1:530,0:131.37:176.91	1/1:1731,0:1945.96:176.91	1/1:1350,2:1415.98:176.91	1/1:795,0:539.77:176.91
1	564621	var_1535671	T	G	.	MISMAPPED_UNPLACEABLE	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	0/0:0,0:0.00:0.04	0/0:1,0:0.70:0.04	1/1:0,1:0.69:0.04	0/0:0,0:0.00:0.04	0/0:0,0:0.00:0.04	0/0:0,0:0.00:0.04	0/0:1,0:0.70:0.04	0/1:1,1:4.00:0.04	0/0:0,0:0.00:0.04	0/0:0,0:0.00:0.04	0/0:0,0:0.00:0.04	0/0:4,0:2.77:0.04	0/0:0,0:0.00:0.04	0/0:0,0:0.00:0.04	0/0:0,0:0.00:0.04	0/0:0,0:0.00:0.04	0/0:0,0:0.00:0.04	0/0:0,0:0.00:0.04	0/0:0,0:0.00:0.04	0/0:0,0:0.00:0.04	0/0:0,0:0.00:0.04	0/0:0,0:0.00:0.04	0/0:0,0:0.00:0.04	0/0:0,0:0.00:0.04	0/1:1,2:3.61:0.04	0/0:0,0:0.00:0.04	0/0:0,0:0.00:0.04	0/0:0,0:0.00:0.04	0/0:0,0:0.00:0.04	0/0:0,0:0.00:0.04	0/0:0,0:0.00:0.04	0/1:7,4:13.70:0.04	1/1:0,2:1.39:0.04	1/1:0,2:1.38:0.04	0/1:2,4:7.48:0.04	0/0:0,0:0.00:0.04	0/0:0,0:0.00:0.04	0/0:0,0:0.00:0.04	0/0:0,0:0.00:0.04	0/0:0,0:0.00:0.04	0/0:2,0:1.39:0.04	0/0:2,0:1.39:0.04	0/0:0,0:0.00:0.04	0/0:0,0:0.00:0.04	0/0:1,0:0.69:0.04	0/0:0,0:0.00:0.04	0/0:0,0:0.00:0.04	0/0:0,0:0.00:0.04	0/0:4,0:2.77:0.04	0/0:0,0:0.00:0.04	0/0:1,0:0.70:0.04	0/0:0,0:0.00:0.04	0/0:0,0:0.00:0.04	1/1:0,1:0.69:0.04	0/0:0,0:0.00:0.04	0/0:0,0:0.00:0.04	0/0:0,0:0.00:0.04	0/1:1,1:4.03:0.04	0/0:0,0:0.00:0.04	0/0:0,0:0.00:0.04	0/0:1,0:0.70:0.04	0/0:0,0:0.00:0.04	0/0:0,0:0.00:0.04	1/1:0,1:0.69:0.04	0/0:0,0:0.00:0.04	1/1:0,1:0.69:0.04	0/0:2,0:1.39:0.04	0/0:0,0:0.00:0.04	0/0:0,0:0.00:0.04	0/0:0,0:0.00:0.04	0/0:1,0:0.70:0.04	0/0:0,0:0.00:0.04	0/0:0,0:0.00:0.04	0/0:1,0:0.69:0.04	0/0:0,0:0.00:0.04	0/0:0,0:0.00:0.04	0/0:1,0:0.70:0.04	0/0:0,0:0.00:0.04
1	564624	var_785487	A	C	.	PF_FAIL_REPEAT	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	1/1:920,1:429.12:175.30	1/1:894,0:452.64:175.30	1/1:2125,0:2378.40:175.30	1/1:645,0:446.95:175.30	0/0:8,0:5.55:175.30	1/1:1270,0:1240.58:175.30	1/1:1350,1:1298.83:175.30	1/1:1042,0:590.70:175.30	1/1:1417,0:1696.25:175.30	1/1:1604,1:2226.00:175.30	1/1:1281,0:1151.40:175.30	1/1:786,0:747.25:175.30	0/0:521,0:133.76:175.30	1/1:964,0:1090.59:175.30	1/1:1337,0:1086.75:175.30	0/0:448,0:138.70:175.30	1/1:1247,0:719.07:175.30	1/1:488,0:195.33:175.30	1/1:914,0:537.55:175.30	1/1:1288,0:938.06:175.30	1/1:892,0:452.18:175.30	1/1:1119,0:983.60:175.30	1/1:1907,1:1777.31:175.30	1/1:1454,0:1126.33:175.30	1/1:4462,0:7640.72:175.30	0/0:3,0:2.08:175.30	1/1:681,0:300.64:175.30	1/1:1007,0:524.34:175.30	1/1:1386,0:1387.47:175.30	1/1:935,0:517.47:175.30	1/1:990,0:319.79:175.30	1/1:5076,5:7174.15:175.30	1/1:1216,0:836.75:175.30	1/1:1728,0:2001.12:175.30	1/1:1999,2:889.38:175.30	0/0:54,0:37.43:175.30	1/1:714,0:454.46:175.30	1/1:619,0:287.83:175.30	1/1:2506,1:3117.90:175.30	1/1:654,0:433.92:175.30	1/1:1358,0:1001.91:175.30	1/1:697,1:583.22:175.30	1/1:1249,0:792.23:175.30	1/1:300,0:311.95:175.30	1/1:1323,0:1176.66:175.30	1/1:1190,1:1088.53:175.30	1/1:895,0:637.63:175.30	0/0:6,0:4.16:175.30	1/1:1566,0:1679.99:175.30	0/0:19,0:13.17:175.30	1/1:1078,0:852.19:175.30	1/1:1003,0:663.72:175.30	1/1:980,0:606.94:175.30	1/1:820,0:428.45:175.30	1/1:1049,0:575.19:175.30	1/1:1371,1:911.53:175.30	1/1:1227,0:710.38:175.30	1/1:1204,0:820.34:175.30	1/1:560,0:246.05:175.30	1/1:673,0:125.97:175.30	1/1:1461,0:1104.12:175.30	1/1:459,0:144.22:175.30	1/1:720,0:530.81:175.30	0/0:1,0:0.69:175.30	1/1:977,0:659.94:175.30	1/1:1505,0:1016.58:175.30	1/1:1224,1:1114.05:175.30	1/1:1515,0:1270.69:175.30	1/1:1904,0:2794.74:175.30	1/1:843,0:644.71:175.30	1/1:892,0:458.98:175.30	1/1:683,0:409.01:175.30	1/1:1013,1:781.24:175.30	1/1:1126,1:645.55:175.30	1/1:533,0:135.09:175.30	1/1:1728,0:1939.59:175.30	1/1:1345,1:1401.31:175.30	1/1:801,0:549.84:175.30
1	564626	var_1987311	T	G	.	PF_FAIL_REPEAT;MISMAPPED_UNPLACEABLE	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	0/0:0,0:0.00:4.11	0/0:0,0:0.00:4.11	0/0:0,0:0.00:4.11	0/0:0,0:0.00:4.11	1/1:0,1:0.70:4.11	0/0:0,0:0.00:4.11	0/0:1,0:0.70:4.11	0/0:1,0:0.70:4.11	0/0:0,0:0.00:4.11	0/0:0,0:0.00:4.11	0/0:0,0:0.00:4.11	0/1:2,1:2.64:4.11	0/0:0,0:0.00:4.11	1/1:0,1:0.69:4.11	0/0:0,0:0.00:4.11	1/1:0,1:0.69:4.11	0/0:0,0:0.00:4.11	0/0:0,0:0.00:4.11	0/0:0,0:0.00:4.11	0/0:0,0:0.00:4.11	0/0:0,0:0.00:4.11	0/0:0,0:0.00:4.11	0/0:2,0:1.38:4.11	0/0:0,0:0.00:4.11	0/0:1,0:0.69:4.11	0/0:0,0:0.00:4.11	0/0:0,0:0.00:4.11	0/0:3,0:2.08:4.11	0/0:1,0:0.69:4.11	0/0:0,0:0.00:4.11	0/0:0,0:0.00:4.11	0/1:8,6:20.47:4.11	0/0:0,0:0.00:4.11	0/0:0,0:0.00:4.11	0/1:4,2:7.48:4.11	0/0:0,0:0.00:4.11	0/0:0,0:0.00:4.11	0/0:0,0:0.00:4.11	0/0:0,0:0.00:4.11	0/0:0,0:0.00:4.11	0/0:1,0:0.70:4.11	1/1:0,1:0.69:4.11	0/0:0,0:0.00:4.11	0/0:0,0:0.00:4.11	0/0:0,0:0.00:4.11	0/0:0,0:0.00:4.11	0/0:0,0:0.00:4.11	0/0:0,0:0.00:4.11	0/1:1,1:3.90:4.11	0/0:0,0:0.00:4.11	0/0:0,0:0.00:4.11	0/0:0,0:0.00:4.11	0/0:0,0:0.00:4.11	0/0:0,0:0.00:4.11	0/0:1,0:0.70:4.11	0/0:0,0:0.00:4.11	0/0:0,0:0.00:4.11	0/0:1,0:0.69:4.11	0/0:0,0:0.00:4.11	0/0:0,0:0.00:4.11	0/0:0,0:0.00:4.11	0/0:0,0:0.00:4.11	0/0:0,0:0.00:4.11	0/0:1,0:0.69:4.11	0/0:0,0:0.00:4.11	0/0:0,0:0.00:4.11	0/0:1,0:0.70:4.11	0/0:0,0:0.00:4.11	0/0:2,0:1.39:4.11	0/0:0,0:0.00:4.11	0/0:0,0:0.00:4.11	0/0:0,0:0.00:4.11	0/0:0,0:0.00:4.11	0/0:1,0:0.69:4.11	0/0:0,0:0.00:4.11	0/1:3,2:6.51:4.11	0/0:1,0:0.70:4.11	0/0:0,0:0.00:4.11
1	564627	var_4063931	C	G	.	PF_FAIL_REPEAT;MISMAPPED_UNPLACEABLE	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	0/0:0,0:0.00:0.02	0/0:0,0:0.00:0.02	1/1:0,1:0.69:0.02	0/0:0,0:0.00:0.02	0/0:0,0:0.00:0.02	1/1:0,2:1.39:0.02	0/0:0,0:0.00:0.02	0/0:0,0:0.00:0.02	0/0:0,0:0.00:0.02	0/0:3,0:2.08:0.02	0/0:0,0:0.00:0.02	1/1:0,2:1.39:0.02	0/0:0,0:0.00:0.02	0/0:2,0:1.39:0.02	0/0:0,0:0.00:0.02	0/0:0,0:0.00:0.02	0/0:1,0:0.69:0.02	0/0:0,0:0.00:0.02	1/1:0,2:1.39:0.02	0/0:0,0:0.00:0.02	0/0:0,0:0.00:0.02	0/0:0,0:0.00:0.02	1/1:0,1:0.69:0.02	0/0:0,0:0.00:0.02	1/1:0,2:1.39:0.02	0/0:0,0:0.00:0.02	0/0:0,0:0.00:0.02	0/0:0,0:0.00:0.02	0/0:0,0:0.00:0.02	0/0:0,0:0.00:0.02	0/0:0,0:0.00:0.02	0/1:1,7:0.58:0.02	1/1:0,1:0.70:0.02	0/1:1,1:3.91:0.02	1/1:0,1:0.70:0.02	0/0:0,0:0.00:0.02	0/1:1,1:3.56:0.02	0/0:0,0:0.00:0.02	0/0:0,0:0.00:0.02	0/0:0,0:0.00:0.02	0/0:0,0:0.00:0.02	0/1:1,3:1.95:0.02	0/0:0,0:0.00:0.02	1/1:0,1:0.70:0.02	0/0:0,0:0.00:0.02	1/1:0,1:0.69:0.02	1/1:0,1:0.69:0.02	0/0:0,0:0.00:0.02	0/0:0,0:0.00:0.02	0/0:0,0:0.00:0.02	0/0:0,0:0.00:0.02	0/0:0,0:0.00:0.02	0/0:1,0:0.70:0.02	0/0:1,0:0.69:0.02	0/0:1,0:0.70:0.02	0/0:0,0:0.00:0.02	0/0:0,0:0.00:0.02	0/0:0,0:0.00:0.02	0/0:0,0:0.00:0.02	0/0:0,0:0.00:0.02	0/0:0,0:0.00:0.02	0/0:0,0:0.00:0.02	0/0:0,0:0.00:0.02	0/0:0,0:0.00:0.02	0/0:0,0:0.00:0.02	0/0:0,0:0.00:0.02	0/0:3,0:2.08:0.02	0/0:1,0:0.70:0.02	0/0:0,0:0.00:0.02	0/0:0,0:0.00:0.02	0/0:0,0:0.00:0.02	0/0:0,0:0.00:0.02	0/0:0,0:0.00:0.02	0/0:0,0:0.00:0.02	0/0:0,0:0.00:0.02	1/1:0,1:0.70:0.02	0/0:0,0:0.00:0.02	0/0:0,0:0.00:0.02
1	564629	var_2127576	T	C	.	MISMAPPED_UNPLACEABLE	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	0/0:0,0:0.00:1.44	0/0:0,0:0.00:1.44	0/0:0,0:0.00:1.44	0/0:0,0:0.00:1.44	0/0:0,0:0.00:1.44	0/0:0,0:0.00:1.44	0/0:3,0:2.08:1.44	1/1:0,1:0.70:1.44	1/1:0,2:1.38:1.44	1/1:0,3:2.08:1.44	0/0:0,0:0.00:1.44	0/0:0,0:0.00:1.44	0/0:0,0:0.00:1.44	0/0:0,0:0.00:1.44	0/0:0,0:0.00:1.44	0/0:0,0:0.00:1.44	0/0:0,0:0.00:1.44	0/0:0,0:0.00:1.44	0/0:0,0:0.00:1.44	0/0:0,0:0.00:1.44	0/0:1,0:0.69:1.44	0/0:0,0:0.00:1.44	0/0:0,0:0.00:1.44	0/0:0,0:0.00:1.44	0/0:0,0:0.00:1.44	0/0:0,0:0.00:1.44	0/0:0,0:0.00:1.44	0/0:0,0:0.00:1.44	0/0:1,0:0.69:1.44	0/0:2,0:1.38:1.44	1/1:0,1:0.70:1.44	0/0:3,0:2.08:1.44	0/0:0,0:0.00:1.44	0/0:0,0:0.00:1.44	0/1:4,3:11.85:1.44	1/1:0,1:0.69:1.44	0/0:0,0:0.00:1.44	0/0:0,0:0.00:1.44	0/0:0,0:0.00:1.44	1/1:0,2:1.38:1.44	0/0:0,0:0.00:1.44	0/0:1,0:0.69:1.44	0/0:0,0:0.00:1.44	0/0:0,0:0.00:1.44	0/0:0,0:0.00:1.44	0/0:0,0:0.00:1.44	0/0:0,0:0.00:1.44	1/1:0,1:0.70:1.44	0/0:0,0:0.00:1.44	0/0:0,0:0.00:1.44	0/0:0,0:0.00:1.44	0/0:0,0:0.00:1.44	1/1:0,1:0.70:1.44	1/1:0,1:0.69:1.44	1/1:0,1:0.70:1.44	0/0:1,0:0.70:1.44	0/0:0,0:0.00:1.44	0/0:0,0:0.00:1.44	0/1:1,1:3.51:1.44	0/0:0,0:0.00:1.44	0/0:0,0:0.00:1.44	0/0:0,0:0.00:1.44	0/0:1,0:0.70:1.44	0/0:0,0:0.00:1.44	0/0:0,0:0.00:1.44	0/0:1,0:0.69:1.44	1/1:0,1:0.70:1.44	0/0:0,0:0.00:1.44	0/0:0,0:0.00:1.44	0/0:0,0:0.00:1.44	0/0:0,0:0.00:1.44	0/0:0,0:0.00:1.44	0/0:0,0:0.00:1.44	0/0:1,0:0.69:1.44	0/0:0,0:0.00:1.44	1/1:0,1:0.70:1.44	0/0:0,0:0.00:1.44	1/1:0,1:0.69:1.44
1	564630	var_5683896	T	G	.	PF_FAIL_REPEAT	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	1/1:1082,0:673.18:179.89	1/1:1026,0:660.20:179.89	0/0:5,0:3.46:179.89	1/1:666,0:482.72:179.89	1/1:1903,0:2218.86:179.89	1/1:1288,0:1276.24:179.89	1/1:1315,1:1230.85:179.89	1/1:1227,1:900.78:179.89	1/1:1366,0:1585.28:179.89	1/1:1599,0:2209.10:179.89	1/1:1440,1:1467.55:179.89	1/1:830,0:834.09:179.89	0/0:592,0:76.85:179.89	1/1:898,1:957.25:179.89	1/1:1276,0:977.76:179.89	0/0:530,0:75.65:179.89	1/1:1357,0:896.86:179.89	0/0:0,0:0.00:179.89	1/1:962,0:614.81:179.89	1/1:1515,1:1354.03:179.89	1/1:965,0:564.78:179.89	1/1:1235,0:1206.97:179.89	1/1:1942,0:1839.45:179.89	1/1:1326,0:905.34:179.89	1/1:4921,0:8908.06:179.89	1/1:900,0:853.11:179.89	1/1:723,0:362.22:179.89	1/1:1071,0:623.41:179.89	1/1:1418,0:1451.79:179.89	1/1:997,0:615.54:179.89	1/1:1173,0:577.15:179.89	1/1:4976,5:6934.40:179.89	1/1:1281,0:947.97:179.89	1/1:1759,0:2068.22:179.89	1/1:2408,5:1530.74:179.89	1/1:1647,0:1717.58:179.89	1/1:746,0:507.36:179.89	1/1:651,0:335.33:179.89	1/1:2696,0:3544.97:179.89	1/1:698,0:508.31:179.89	1/1:1417,0:1105.53:179.89	1/1:510,0:264.95:179.89	1/1:1321,0:911.70:179.89	1/1:300,0:311.95:179.89	1/1:1394,0:1312.47:179.89	1/1:1180,1:1069.50:179.89	1/1:968,0:765.23:179.89	1/1:1125,0:1251.63:179.89	1/1:1665,0:1888.01:179.89	1/1:1576,0:1340.42:179.89	1/1:1112,0:913.47:179.89	1/1:1048,0:739.32:179.89	1/1:1102,0:811.31:179.89	1/1:839,1:462.70:179.89	1/1:1074,0:614.10:179.89	1/1:1381,0:922.58:179.89	1/1:1358,0:923.55:179.89	1/1:1300,0:985.15:179.89	1/1:617,0:330.52:179.89	1/1:818,1:317.25:179.89	1/1:1491,1:1162.55:179.89	1/1:448,0:129.98:179.89	1/1:663,0:434.40:179.89	1/1:1398,0:1415.29:179.89	1/1:1025,0:741.33:179.89	1/1:1631,0:1232.48:179.89	1/1:1218,1:1102.65:179.89	0/0:35,0:24.26:179.89	1/1:1840,0:2638.02:179.89	1/1:916,0:776.28:179.89	1/1:925,0:509.42:179.89	1/1:697,0:431.46:179.89	1/1:1041,0:825.80:179.89	1/1:1274,0:881.02:179.89	1/1:574,0:187.75:179.89	1/1:1791,0:2074.29:179.89	1/1:1345,2:1405.79:179.89	1/1:810,0:565.02:179.89
1	564631	var_2746598	G	A	.	PF_FAIL_REPEAT;MISMAPPED_UNPLACEABLE	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	0/0:0,0:0.00:1.92	0/0:1,0:0.70:1.92	0/0:0,0:0.00:1.92	0/1:2,1:2.71:1.92	0/0:0,0:0.00:1.92	0/0:1,0:0.69:1.92	0/0:0,0:0.00:1.92	0/0:0,0:0.00:1.92	0/0:0,0:0.00:1.92	1/1:0,2:1.38:1.92	0/0:0,0:0.00:1.92	0/0:0,0:0.00:1.92	0/0:0,0:0.00:1.92	0/0:0,0:0.00:1.92	0/0:0,0:0.00:1.92	0/0:0,0:0.00:1.92	0/0:0,0:0.00:1.92	0/0:0,0:0.00:1.92	1/1:0,1:0.69:1.92	0/0:0,0:0.00:1.92	0/0:0,0:0.00:1.92	0/0:0,0:0.00:1.92	0/0:1,0:0.69:1.92	0/0:0,0:0.00:1.92	1/1:0,1:0.69:1.92	0/0:0,0:0.00:1.92	0/0:0,0:0.00:1.92	0/0:0,0:0.00:1.92	0/0:0,0:0.00:1.92	0/0:1,0:0.69:1.92	0/0:1,0:0.70:1.92	0/1:4,6:14.39:1.92	0/0:0,0:0.00:1.92	0/0:0,0:0.00:1.92	0/0:0,0:0.00:1.92	0/0:0,0:0.00:1.92	0/0:0,0:0.00:1.92	0/0:2,0:1.39:1.92	0/0:0,0:0.00:1.92	0/1:1,1:3.44:1.92	0/0:0,0:0.00:1.92	0/1:1,1:3.33:1.92	0/0:0,0:0.00:1.92	0/0:0,0:0.00:1.92	0/0:0,0:0.00:1.92	0/0:1,0:0.69:1.92	1/1:0,1:0.69:1.92	0/0:0,0:0.00:1.92	0/0:1,0:0.69:1.92	0/0:1,0:0.70:1.92	0/0:0,0:0.00:1.92	0/0:0,0:0.00:1.92	0/0:0,0:0.00:1.92	0/0:0,0:0.00:1.92	0/0:0,0:0.00:1.92	1/1:0,1:0.70:1.92	0/0:1,0:0.69:1.92	0/0:0,0:0.00:1.92	0/0:0,0:0.00:1.92	0/0:0,0:0.00:1.92	0/0:0,0:0.00:1.92	0/0:1,0:0.69:1.92	0/0:0,0:0.00:1.92	0/0:0,0:0.00:1.92	0/0:0,0:0.00:1.92	1/1:0,1:0.69:1.92	0/0:0,0:0.00:1.92	0/0:0,0:0.00:1.92	1/1:0,2:1.39:1.92	0/0:0,0:0.00:1.92	0/0:0,0:0.00:1.92	0/0:1,0:0.69:1.92	0/0:0,0:0.00:1.92	1/1:0,1:0.69:1.92	0/0:0,0:0.00:1.92	0/0:0,0:0.00:1.92	0/0:1,0:0.70:1.92	0/0:2,0:1.38:1.92
1	564631	var_312868	A	C	.	PF_FAIL_REPEAT;MISMAPPED_UNPLACEABLE	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	0/0:0,0:0.00:1.59	0/0:0,0:0.00:1.59	0/0:0,0:0.00:1.59	0/0:0,0:0.00:1.59	0/0:0,0:0.00:1.59	0/0:0,0:0.00:1.59	0/0:0,0:0.00:1.59	0/0:1,0:0.70:1.59	0/0:0,0:0.00:1.59	0/0:0,0:0.00:1.59	0/0:0,0:0.00:1.59	1/1:0,1:0.69:1.59	0/0:0,0:0.00:1.59	0/0:0,0:0.00:1.59	0/0:0,0:0.00:1.59	0/0:0,0:0.00:1.59	0/0:0,0:0.00:1.59	0/0:0,0:0.00:1.59	0/1:1,1:3.85:1.59	1/1:0,1:0.70:1.59	0/0:0,0:0.00:1.59	0/0:0,0:0.00:1.59	0/0:0,0:0.00:1.59	0/0:0,0:0.00:1.59	1/1:0,1:0.69:1.59	0/0:0,0:0.00:1.59	0/0:0,0:0.00:1.59	0/0:2,0:1.38:1.59	0/0:1,0:0.69:1.59	0/0:0,0:0.00:1.59	0/0:0,0:0.00:1.59	0/1:3,4:11.74:1.59	0/0:0,0:0.00:1.59	1/1:0,1:0.69:1.59	0/0:3,0:2.08:1.59	0/0:0,0:0.00:1.59	0/0:0,0:0.00:1.59	0/0:0,0:0.00:1.59	0/0:0,0:0.00:1.59	0/0:0,0:0.00:1.59	0/0:0,0:0.00:1.59	0/0:0,0:0.00:1.59	0/0:0,0:0.00:1.59	0/0:0,0:0.00:1.59	0/0:0,0:0.00:1.59	1/1:0,1:0.69:1.59	0/0:0,0:0.00:1.59	0/0:0,0:0.00:1.59	0/0:0,0:0.00:1.59	0/0:0,0:0.00:1.59	0/0:0,0:0.00:1.59	0/1:1,1:3.87:1.59	0/0:0,0:0.00:1.59	0/0:0,0:0.00:1.59	0/0:0,0:0.00:1.59	1/1:0,1:0.70:1.59	0/0:1,0:0.69:1.59	0/0:0,0:0.00:1.59	0/0:0,0:0.00:1.59	0/0:0,0:0.00:1.59	0/0:1,0:0.70:1.59	0/0:0,0:0.00:1.59	0/0:0,0:0.00:1.59	0/0:0,0:0.00:1.59	0/0:0,0:0.00:1.59	0/0:0,0:0.00:1.59	0/0:0,0:0.00:1.59	0/0:0,0:0.00:1.59	0/0:2,0:1.39:1.59	0/0:0,0:0.00:1.59	0/0:0,0:0.00:1.59	0/0:1,0:0.69:1.59	0/0:0,0:0.00:1.59	0/0:1,0:0.69:1.59	0/0:0,0:0.00:1.59	0/0:1,0:0.70:1.59	0/0:0,0:0.00:1.59	0/0:0,0:0.00:1.59
1	564633	var_2041514	G	C	.	PF_FAIL_REPEAT;MISMAPPED_UNPLACEABLE	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	0/0:0,0:0.00:2.93	0/0:1,0:0.70:2.93	0/0:0,0:0.00:2.93	0/0:0,0:0.00:2.93	1/1:0,2:1.38:2.93	0/0:0,0:0.00:2.93	0/1:3,1:2.48:2.93	0/0:0,0:0.00:2.93	0/1:1,1:3.68:2.93	0/1:1,1:3.61:2.93	0/0:1,0:0.69:2.93	0/1:1,2:2.64:2.93	0/0:0,0:0.00:2.93	0/0:3,0:2.08:2.93	0/0:0,0:0.00:2.93	0/0:0,0:0.00:2.93	0/0:1,0:0.69:2.93	0/0:0,0:0.00:2.93	0/0:0,0:0.00:2.93	0/0:0,0:0.00:2.93	0/0:0,0:0.00:2.93	0/0:0,0:0.00:2.93	1/1:0,1:0.69:2.93	0/0:0,0:0.00:2.93	1/1:0,1:0.69:2.93	0/0:0,0:0.00:2.93	0/0:0,0:0.00:2.93	0/0:0,0:0.00:2.93	0/0:0,0:0.00:2.93	0/0:0,0:0.00:2.93	0/0:0,0:0.00:2.93	0/1:3,5:11.04:2.93	1/1:0,1:0.70:2.93	0/0:0,0:0.00:2.93	0/0:1,0:0.70:2.93	0/0:0,0:0.00:2.93	0/0:0,0:0.00:2.93	0/0:0,0:0.00:2.93	0/0:0,0:0.00:2.93	0/0:0,0:0.00:2.93	0/0:0,0:0.00:2.93	0/0:0,0:0.00:2.93	0/0:0,0:0.00:2.93	0/0:0,0:0.00:2.93	0/0:1,0:0.69:2.93	0/1:2,2:6.88:2.93	0/0:0,0:0.00:2.93	0/0:0,0:0.00:2.93	0/0:0,0:0.00:2.93	0/0:0,0:0.00:2.93	0/0:0,0:0.00:2.93	0/1:1,1:3.87:2.93	0/0:0,0:0.00:2.93	0/0:1,0:0.69:2.93	0/0:0,0:0.00:2.93	1/1:0,1:0.70:2.93	0/0:0,0:0.00:2.93	0/0:0,0:0.00:2.93	0/0:0,0:0.00:2.93	1/1:0,2:1.38:2.93	1/1:0,2:1.38:2.93	0/0:0,0:0.00:2.93	0/0:0,0:0.00:2.93	1/1:0,2:1.39:2.93	0/0:1,0:0.69:2.93	0/0:0,0:0.00:2.93	0/0:2,0:1.39:2.93	0/0:0,0:0.00:2.93	0/0:0,0:0.00:2.93	0/0:0,0:0.00:2.93	0/0:0,0:0.00:2.93	0/0:0,0:0.00:2.93	0/0:0,0:0.00:2.93	0/0:0,0:0.00:2.93	0/0:0,0:0.00:2.93	0/0:0,0:0.00:2.93	0/0:0,0:0.00:2.93	0/0:0,0:0.00:2.93
1	564634	var_1744545	T	C	.	PF_FAIL_REPEAT;MISMAPPED_UNPLACEABLE	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	0/0:1,0:0.70:2.79	0/0:0,0:0.00:2.79	0/0:0,0:0.00:2.79	0/0:0,0:0.00:2.79	0/0:1,0:0.70:2.79	0/0:0,0:0.00:2.79	0/0:0,0:0.00:2.79	0/0:0,0:0.00:2.79	0/0:1,0:0.70:2.79	0/0:2,0:1.38:2.79	0/0:0,0:0.00:2.79	0/0:0,0:0.00:2.79	0/0:0,0:0.00:2.79	0/0:1,0:0.69:2.79	0/1:1,1:4.00:2.79	0/0:2,0:1.39:2.79	1/1:0,1:0.69:2.79	0/0:0,0:0.00:2.79	0/0:0,0:0.00:2.79	0/0:0,0:0.00:2.79	0/0:0,0:0.00:2.79	0/0:0,0:0.00:2.79	0/0:2,0:1.38:2.79	0/0:0,0:0.00:2.79	1/1:0,2:1.39:2.79	0/0:0,0:0.00:2.79	0/0:0,0:0.00:2.79	0/0:0,0:0.00:2.79	0/1:1,1:3.85:2.79	0/0:0,0:0.00:2.79	1/1:0,1:0.70:2.79	0/1:15,5:11.98:2.79	0/0:1,0:0.70:2.79	1/1:0,1:0.69:2.79	0/1:2,2:8.86:2.79	0/0:0,0:0.00:2.79	0/0:0,0:0.00:2.79	0/0:0,0:0.00:2.79	1/1:0,1:0.69:2.79	0/0:0,0:0.00:2.79	0/1:2,4:6.11:2.79	0/1:1,1:3.33:2.79	0/0:0,0:0.00:2.79	0/0:0,0:0.00:2.79	0/0:0,0:0.00:2.79	0/0:1,0:0.69:2.79	0/0:1,0:0.69:2.79	1/1:0,1:0.70:2.79	0/0:0,0:0.00:2.79	0/0:0,0:0.00:2.79	0/0:0,0:0.00:2.79	0/0:0,0:0.00:2.79	0/0:2,0:1.38:2.79	0/0:1,0:0.69:2.79	1/1:0,1:0.70:2.79	0/0:0,0:0.00:2.79	0/0:0,0:0.00:2.79	0/0:0,0:0.00:2.79	0/0:0,0:0.00:2.79	0/0:0,0:0.00:2.79	1/1:0,2:1.38:2.79	0/0:1,0:0.69:2.79	0/0:0,0:0.00:2.79	0/0:0,0:0.00:2.79	0/0:0,0:0.00:2.79	0/0:0,0:0.00:2.79	1/1:0,2:1.39:2.79	0/0:0,0:0.00:2.79	0/0:1,0:0.69:2.79	0/1:1,1:3.59:2.79	0/0:0,0:0.00:2.79	0/0:0,0:0.00:2.79	0/0:0,0:0.00:2.79	0/0:0,0:0.00:2.79	0/0:0,0:0.00:2.79	1/1:0,3:2.08:2.79	0/0:0,0:0.00:2.79	0/0:0,0:0.00:2.79
1	564637	var_3636471	A	C	.	PF_FAIL_REPEAT	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	1/1:1092,0:689.41:179.96	1/1:1033,1:677.00:179.96	0/0:3,0:2.08:179.96	1/1:678,0:503.47:179.96	1/1:1881,0:2171.39:179.96	1/1:1275,0:1250.46:179.96	1/1:1281,0:1160.46:179.96	1/1:1235,0:909.24:179.96	1/1:1340,1:1534.49:179.96	1/1:1550,1:2098.29:179.96	1/1:1460,0:1502.69:179.96	1/1:814,0:802.23:179.96	0/0:628,0:44.67:179.96	1/1:875,0:905.50:179.96	1/1:1268,0:963.68:179.96	0/0:534,0:72.23:179.96	1/1:1333,0:857.28:179.96	1/1:0,0:0.00:179.96	1/1:977,0:639.45:179.96	1/1:1548,1:1416.67:179.96	1/1:955,1:554.31:179.96	1/1:1252,0:1240.65:179.96	1/1:1979,0:1911.77:179.96	1/1:1343,0:934.00:179.96	1/1:4800,0:8569.64:179.96	1/1:910,0:872.60:179.96	1/1:737,2:392.78:179.96	1/1:1077,0:632.90:179.96	1/1:1434,2:1494.00:179.96	0/0:2,0:1.38:179.96	1/1:1180,0:587.58:179.96	1/1:5042,8:7104.96:179.96	1/1:1291,0:965.38:179.96	1/1:1695,0:1930.30:179.96	1/1:2380,3:1476.13:179.96	1/1:1651,2:1735.79:179.96	1/1:731,0:482.39:179.96	1/1:660,1:353.95:179.96	1/1:2682,0:3512.63:179.96	1/1:702,0:515.21:179.96	1/1:1428,0:1125.12:179.96	1/1:730,2:648.23:179.96	1/1:1304,1:888.64:179.96	1/1:293,0:297.83:179.96	1/1:1447,3:1430.32:179.96	1/1:1148,0:1004.01:179.96	1/1:973,1:779.26:179.96	1/1:1101,1:1206.18:179.96	1/1:1654,0:1864.59:179.96	1/1:1534,2:1273.71:179.96	1/1:1140,0:964.73:179.96	1/1:1058,0:756.39:179.96	1/1:1110,0:825.20:179.96	1/1:823,1:438.20:179.96	1/1:1105,0:663.15:179.96	1/1:1371,0:905.96:179.96	1/1:1359,0:925.22:179.96	1/1:1308,0:999.22:179.96	1/1:627,1:350.80:179.96	1/1:805,0:294.12:179.96	1/1:1498,0:1169.44:179.96	1/1:441,0:121.06:179.96	1/1:657,1:429.37:179.96	1/1:1353,0:1325.60:179.96	1/1:1047,2:789.12:179.96	1/1:1597,0:1173.23:179.96	1/1:1161,0:990.62:179.96	0/0:30,0:20.79:179.96	1/1:1789,0:2514.73:179.96	1/1:952,1:848.32:179.96	1/1:933,0:521.83:179.96	1/1:680,0:404.24:179.96	1/1:1004,1:765.41:179.96	1/1:1283,0:896.25:179.96	1/1:580,0:195.71:179.96	1/1:1829,0:2156.61:179.96	1/1:1263,1:1237.00:179.96	1/1:821,0:583.72:179.96
1	564638	var_2579483	C	A	.	PF_FAIL_REPEAT	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	1/1:1002,0:546.72:177.18	1/1:975,1:583.16:177.18	1/1:2217,0:2575.15:177.18	1/1:658,0:469.02:177.18	0/0:9,0:6.23:177.18	1/1:1290,0:1280.22:177.18	1/1:1312,1:1225.07:177.18	1/1:1131,0:733.51:177.18	1/1:1372,0:1598.24:177.18	1/1:1588,0:2182.97:177.18	1/1:1363,0:1309.42:177.18	1/1:831,5:854.91:177.18	0/0:563,0:101.19:177.18	1/1:923,2:1013.05:177.18	1/1:1395,0:1192.96:177.18	0/0:510,0:92.27:177.18	1/1:1322,0:839.28:177.18	1/1:482,0:187.01:177.18	1/1:958,0:608.28:177.18	1/1:1373,0:1087.45:177.18	1/1:929,0:508.53:177.18	1/1:1191,0:1120.91:177.18	1/1:1905,1:1773.46:177.18	1/1:1560,0:1317.92:177.18	1/1:4766,1:8480.78:177.18	0/0:4,0:2.77:177.18	1/1:670,0:284.93:177.18	1/1:998,0:510.73:177.18	1/1:1378,0:1371.52:177.18	1/1:983,1:598.34:177.18	1/1:1092,0:459.43:177.18	1/1:4991,9:6986.72:177.18	1/1:1215,1:840.48:177.18	1/1:1689,0:1917.50:177.18	1/1:2167,3:1142.73:177.18	0/0:59,0:40.89:177.18	1/1:752,0:517.44:177.18	1/1:657,0:344.42:177.18	1/1:2574,0:3265.55:177.18	1/1:670,0:460.64:177.18	1/1:1384,2:1057.52:177.18	1/1:472,0:208.91:177.18	1/1:1285,0:851.46:177.18	1/1:293,0:297.83:177.18	1/1:1373,0:1271.91:177.18	1/1:1166,1:1043.00:177.18	1/1:941,0:717.37:177.18	0/0:7,0:4.85:177.18	1/1:1621,0:1794.80:177.18	0/0:19,0:13.17:177.18	1/1:1093,0:879.10:177.18	1/1:1027,0:703.80:177.18	1/1:1059,0:737.67:177.18	1/1:825,1:441.25:177.18	1/1:1079,1:627.36:177.18	1/1:1425,0:996.53:177.18	1/1:1318,0:857.06:177.18	1/1:1318,0:1016.87:177.18	1/1:565,0:253.23:177.18	1/1:746,0:216.06:177.18	1/1:1435,0:1058.78:177.18	1/1:464,2:159.73:177.18	1/1:711,0:515.28:177.18	0/0:1,0:0.69:177.18	1/1:1004,1:710.65:177.18	1/1:1547,0:1087.42:177.18	1/1:1247,1:1158.03:177.18	1/1:1535,0:1307.54:177.18	1/1:1843,0:2645.32:177.18	1/1:890,0:728.73:177.18	1/1:883,0:445.42:177.18	1/1:674,0:394.73:177.18	1/1:1022,0:791.98:177.18	1/1:1216,0:784.44:177.18	1/1:558,1:171.88:177.18	1/1:1780,0:2050.60:177.18	1/1:1324,1:1358.74:177.18	1/1:829,0:597.41:177.18
1	564638	var_3779741	T	G	.	PF_FAIL_REPEAT;MISMAPPED_UNPLACEABLE	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	1/1:0,1:0.70:4.34	0/0:1,0:0.70:4.34	0/0:0,0:0.00:4.34	0/0:0,0:0.00:4.34	0/0:2,0:1.38:4.34	0/0:1,0:0.69:4.34	1/1:0,1:0.70:4.34	0/0:2,0:1.39:4.34	0/0:0,0:0.00:4.34	0/0:0,0:0.00:4.34	0/0:0,0:0.00:4.34	0/1:2,1:2.64:4.34	0/0:0,0:0.00:4.34	0/0:0,0:0.00:4.34	0/0:0,0:0.00:4.34	0/0:1,0:0.69:4.34	0/0:0,0:0.00:4.34	0/0:0,0:0.00:4.34	0/0:0,0:0.00:4.34	0/0:1,0:0.70:4.34	0/0:0,0:0.00:4.34	0/0:0,0:0.00:4.34	0/0:0,0:0.00:4.34	0/0:0,0:0.00:4.34	0/0:0,0:0.00:4.34	1/1:0,1:0.69:4.34	0/0:0,0:0.00:4.34	0/0:1,0:0.69:4.34	1/1:0,1:0.69:4.34	0/0:0,0:0.00:4.34	0/0:0,0:0.00:4.34	0/1:10,2:3.24:4.34	0/0:0,0:0.00:4.34	0/0:2,0:1.38:4.34	0/1:6,5:18.41:4.34	0/0:1,0:0.69:4.34	0/0:0,0:0.00:4.34	1/1:0,1:0.69:4.34	0/0:1,0:0.69:4.34	0/0:0,0:0.00:4.34	0/0:1,0:0.70:4.34	0/1:1,2:2.65:4.34	0/0:0,0:0.00:4.34	0/0:0,0:0.00:4.34	1/1:0,1:0.69:4.34	0/0:0,0:0.00:4.34	1/1:0,1:0.69:4.34	0/0:0,0:0.00:4.34	0/0:0,0:0.00:4.34	0/0:0,0:0.00:4.34	0/0:0,0:0.00:4.34	1/1:0,1:0.70:4.34	0/0:0,0:0.00:4.34	0/0:1,0:0.69:4.34	0/1:1,1:4.03:4.34	0/0:0,0:0.00:4.34	0/0:1,0:0.69:4.34	0/0:0,0:0.00:4.34	0/0:0,0:0.00:4.34	0/0:0,0:0.00:4.34	0/0:2,0:1.38:4.34	0/0:0,0:0.00:4.34	1/1:0,1:0.70:4.34	0/0:0,0:0.00:4.34	0/0:0,0:0.00:4.34	0/0:0,0:0.00:4.34	0/0:0,0:0.00:4.34	0/0:0,0:0.00:4.34	0/1:1,3:2.31:4.34	0/0:0,0:0.00:4.34	0/0:0,0:0.00:4.34	0/0:1,0:0.69:4.34	0/0:0,0:0.00:4.34	0/0:2,0:1.38:4.34	0/0:0,0:0.00:4.34	0/0:2,0:1.38:4.34	0/0:1,0:0.70:4.34	0/0:0,0:0.00:4.34
1	564640	var_96625	G	C	.	MISMAPPED_UNPLACEABLE	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	0/0:1,0:0.70:0.85	0/0:0,0:0.00:0.85	0/0:0,0:0.00:0.85	0/0:1,0:0.69:0.85	0/0:0,0:0.00:0.85	0/0:0,0:0.00:0.85	1/1:0,1:0.70:0.85	0/0:0,0:0.00:0.85	0/0:0,0:0.00:0.85	0/0:1,0:0.69:0.85	0/0:0,0:0.00:0.85	1/1:0,1:0.69:0.85	0/0:0,0:0.00:0.85	0/0:2,0:1.39:0.85	0/0:1,0:0.69:0.85	0/0:0,0:0.00:0.85	0/0:0,0:0.00:0.85	0/0:0,0:0.00:0.85	0/0:0,0:0.00:0.85	1/1:0,1:0.70:0.85	0/0:0,0:0.00:0.85	1/1:0,1:0.69:0.85	0/0:1,0:0.69:0.85	0/0:0,0:0.00:0.85	1/1:0,1:0.69:0.85	0/0:0,0:0.00:0.85	0/0:0,0:0.00:0.85	1/1:0,1:0.69:0.85	1/1:0,2:1.39:0.85	0/0:0,0:0.00:0.85	0/0:1,0:0.70:0.85	0/1:2,10:3.24:0.85	0/0:0,0:0.00:0.85	0/1:1,1:3.91:0.85	0/0:2,0:1.38:0.85	0/0:0,0:0.00:0.85	0/0:0,0:0.00:0.85	0/0:1,0:0.69:0.85	0/0:0,0:0.00:0.85	0/0:0,0:0.00:0.85	0/0:0,0:0.00:0.85	0/0:4,0:2.77:0.85	0/0:0,0:0.00:0.85	0/0:1,0:0.70:0.85	0/0:1,0:0.69:0.85	0/0:1,0:0.69:0.85	0/0:0,0:0.00:0.85	0/1:1,1:3.53:0.85	0/0:0,0:0.00:0.85	0/0:0,0:0.00:0.85	0/0:0,0:0.00:0.85	1/1:0,1:0.70:0.85	0/0:0,0:0.00:0.85	0/0:0,0:0.00:0.85	0/0:0,0:0.00:0.85	0/0:0,0:0.00:0.85	0/0:1,0:0.69:0.85	0/0:1,0:0.69:0.85	0/0:1,0:0.69:0.85	0/0:0,0:0.00:0.85	0/0:2,0:1.38:0.85	0/0:0,0:0.00:0.85	1/1:0,1:0.70:0.85	0/0:0,0:0.00:0.85	0/0:0,0:0.00:0.85	0/0:0,0:0.00:0.85	0/0:1,0:0.70:0.85	0/0:0,0:0.00:0.85	0/0:1,0:0.69:0.85	0/0:0,0:0.00:0.85	0/0:0,0:0.00:0.85	0/0:0,0:0.00:0.85	0/0:0,0:0.00:0.85	0/0:0,0:0.00:0.85	0/0:0,0:0.00:0.85	0/1:1,1:3.95:0.85	0/0:0,0:0.00:0.85	0/0:1,0:0.69:0.85
1	564641	var_4571721	G	C	.	PF_FAIL_REPEAT;MISMAPPED_UNPLACEABLE	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	0/0:0,0:0.00:3.68	0/0:0,0:0.00:3.68	0/0:0,0:0.00:3.68	0/1:1,1:3.39:3.68	0/0:1,0:0.70:3.68	0/0:0,0:0.00:3.68	0/0:0,0:0.00:3.68	0/0:0,0:0.00:3.68	0/0:0,0:0.00:3.68	0/0:0,0:0.00:3.68	0/0:0,0:0.00:3.68	0/0:2,0:1.39:3.68	0/0:0,0:0.00:3.68	0/0:1,0:0.69:3.68	0/0:0,0:0.00:3.68	0/0:0,0:0.00:3.68	0/0:0,0:0.00:3.68	0/0:0,0:0.00:3.68	0/0:0,0:0.00:3.68	0/0:1,1:0.70:3.68	0/0:0,0:0.00:3.68	0/0:0,0:0.00:3.68	1/1:0,1:0.69:3.68	0/0:0,0:0.00:3.68	0/0:0,0:0.00:3.68	0/0:0,0:0.00:3.68	0/0:0,0:0.00:3.68	0/0:2,0:1.38:3.68	0/0:0,0:0.00:3.68	0/0:0,0:0.00:3.68	0/0:0,0:0.00:3.68	0/1:5,3:11.04:3.68	0/0:1,0:0.70:3.68	0/0:3,0:2.08:3.68	0/0:1,0:0.70:3.68	0/0:1,0:0.69:3.68	0/0:0,0:0.00:3.68	0/0:0,0:0.00:3.68	0/0:0,0:0.00:3.68	0/0:0,0:0.00:3.68	0/1:1,1:4.10:3.68	1/1:0,2:1.39:3.68	0/0:0,0:0.00:3.68	0/0:0,0:0.00:3.68	0/0:0,0:0.00:3.68	0/0:0,0:0.00:3.68	0/0:0,0:0.00:3.68	0/0:0,0:0.00:3.68	0/0:0,0:0.00:3.68	0/0:1,0:0.70:3.68	0/0:0,0:0.00:3.68	0/1:1,1:3.87:3.68	0/0:0,0:0.00:3.68	0/0:1,0:0.69:3.68	0/0:0,0:0.00:3.68	0/0:0,0:0.00:3.68	1/1:0,1:0.69:3.68	0/0:0,0:0.00:3.68	0/0:0,0:0.00:3.68	0/0:0,0:0.00:3.68	0/0:0,0:0.00:3.68	0/0:0,0:0.00:3.68	0/1:1,1:3.46:3.68	0/0:0,0:0.00:3.68	0/0:0,0:0.00:3.68	0/0:0,0:0.00:3.68	0/0:0,0:0.00:3.68	0/0:0,0:0.00:3.68	0/0:1,0:0.69:3.68	1/1:0,1:0.69:3.68	0/0:0,0:0.00:3.68	0/0:0,0:0.00:3.68	0/0:0,0:0.00:3.68	0/1:1,1:4.07:3.68	0/0:0,0:0.00:3.68	0/0:0,0:0.00:3.68	1/1:0,1:0.70:3.68	0/0:0,0:0.00:3.68
1	564642	var_2661727	G	C	.	PF_FAIL_REPEAT	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	1/1:1090,0:686.16:179.32	1/1:1045,0:691.53:179.32	0/0:2,0:1.39:179.32	1/1:699,0:540.27:179.32	1/1:1881,0:2171.39:179.32	1/1:1314,0:1328.18:179.32	1/1:1292,0:1181.44:179.32	1/1:1254,0:942.31:179.32	1/1:1341,0:1531.57:179.32	1/1:1550,0:2093.29:179.32	1/1:1484,0:1551.52:179.32	1/1:812,2:807.02:179.32	0/0:635,0:38.17:179.32	1/1:883,1:926.52:179.32	1/1:1286,0:995.43:179.32	0/0:533,1:67.66:179.32	1/1:1360,0:901.83:179.32	0/0:0,0:0.00:179.32	1/1:953,0:600.14:179.32	1/1:1576,0:1464.95:179.32	1/1:981,0:590.21:179.32	1/1:1293,0:1322.81:179.32	1/1:1966,0:1886.28:179.32	1/1:1372,0:983.39:179.32	1/1:4809,0:8594.71:179.32	1/1:916,0:884.34:179.32	1/1:756,0:412.33:179.32	1/1:1104,0:676.00:179.32	1/1:1442,0:1500.49:179.32	0/0:2,0:1.38:179.32	1/1:1202,0:620.67:179.32	1/1:5074,1:7149.61:179.32	1/1:1326,0:1026.91:179.32	1/1:1765,0:2081.27:179.32	1/1:2375,2:1463.01:179.32	1/1:1661,0:1746.21:179.32	1/1:750,0:514.07:179.32	1/1:671,0:365.83:179.32	1/1:2732,0:3628.49:179.32	1/1:697,1:511.42:179.32	1/1:1448,0:1160.96:179.32	1/1:727,0:633.87:179.32	1/1:1318,0:906.65:179.32	1/1:296,1:307.54:179.32	1/1:1466,0:1453.87:179.32	1/1:1142,2:1002.45:179.32	1/1:1002,0:826.56:179.32	1/1:1109,0:1218.00:179.32	1/1:1656,0:1868.84:179.32	1/1:1566,0:1321.97:179.32	1/1:1169,0:1018.53:179.32	1/1:1112,0:850.15:179.32	1/1:1121,0:844.39:179.32	1/1:816,0:422.39:179.32	1/1:1113,0:675.96:179.32	1/1:1380,1:926.47:179.32	1/1:1358,0:923.55:179.32	1/1:1311,0:1004.50:179.32	1/1:635,0:358.32:179.32	1/1:829,0:327.13:179.32	1/1:1545,0:1253.74:179.32	1/1:449,0:131.26:179.32	1/1:666,0:439.35:179.32	1/1:1355,0:1329.55:179.32	1/1:1064,0:809.12:179.32	1/1:1621,0:1214.97:179.32	1/1:1179,0:1024.06:179.32	0/0:33,0:22.87:179.32	1/1:1808,0:2560.49:179.32	1/1:977,0:890.71:179.32	1/1:949,0:546.84:179.32	1/1:703,0:441.17:179.32	1/1:1012,0:774.31:179.32	1/1:1289,0:906.43:179.32	1/1:591,0:210.45:179.32	1/1:1843,0:2187.14:179.32	1/1:1290,0:1285.36:179.32	1/1:842,0:619.82:179.32
1	564643	var_5356477	C	T	.	PF_FAIL_REPEAT;MISMAPPED_UNPLACEABLE	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	0/0:0,0:0.00:1.90	0/0:1,0:0.70:1.90	0/0:0,0:0.00:1.90	0/0:0,0:0.00:1.90	1/1:0,1:0.70:1.90	0/0:2,0:1.39:1.90	0/0:0,0:0.00:1.90	0/0:0,0:0.00:1.90	0/0:1,0:0.70:1.90	0/0:0,0:0.00:1.90	0/0:1,0:0.69:1.90	0/1:1,2:2.64:1.90	0/0:0,0:0.00:1.90	0/0:1,0:0.69:1.90	0/0:0,0:0.00:1.90	0/0:0,0:0.00:1.90	0/0:1,0:0.69:1.90	0/0:0,0:0.00:1.90	0/0:0,0:0.00:1.90	0/1:3,2:6.71:1.90	0/0:1,0:0.69:1.90	0/1:1,1:3.76:1.90	0/0:0,0:0.00:1.90	0/0:1,0:0.69:1.90	0/0:1,0:0.69:1.90	0/0:1,0:0.69:1.90	0/0:1,0:0.69:1.90	0/0:0,0:0.00:1.90	0/0:1,0:0.69:1.90	0/0:1,0:0.69:1.90	0/0:0,0:0.00:1.90	0/1:4,5:15.08:1.90	0/0:0,0:0.00:1.90	0/0:0,0:0.00:1.90	0/1:2,2:8.86:1.90	0/0:0,0:0.00:1.90	0/0:1,0:0.70:1.90	0/0:0,0:0.00:1.90	0/0:1,0:0.69:1.90	0/0:1,0:0.69:1.90	1/1:0,1:0.70:1.90	0/1:1,2:2.65:1.90	0/0:0,0:0.00:1.90	0/0:0,0:0.00:1.90	0/0:2,0:1.38:1.90	0/0:1,0:0.69:1.90	0/0:1,0:0.69:1.90	0/0:2,0:1.38:1.90	0/0:0,0:0.00:1.90	1/1:0,1:0.70:1.90	0/0:1,0:0.70:1.90	0/0:0,0:0.00:1.90	0/0:0,0:0.00:1.90	0/0:0,0:0.00:1.90	0/0:0,0:0.00:1.90	0/0:0,0:0.00:1.90	0/0:1,0:0.69:1.90	0/0:0,0:0.00:1.90	0/0:1,0:0.69:1.90	0/0:0,0:0.00:1.90	0/0:0,0:0.00:1.90	0/0:0,0:0.00:1.90	1/1:0,1:0.70:1.90	0/0:2,0:1.39:1.90	1/1:0,1:0.69:1.90	0/0:0,0:0.00:1.90	1/1:0,1:0.70:1.90	0/0:1,0:0.70:1.90	0/0:0,0:0.00:1.90	0/0:1,0:0.69:1.90	0/0:0,0:0.00:1.90	0/0:3,0:2.08:1.90	0/0:0,0:0.00:1.90	0/0:0,0:0.00:1.90	0/0:0,0:0.00:1.90	1/1:0,1:0.70:1.90	0/0:0,0:0.00:1.90	1/1:0,1:0.69:1.90
1	564644	var_5777116	C	T	.	PF_FAIL_REPEAT	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	1/1:1083,0:674.80:180.96	1/1:1058,0:713.16:180.96	0/0:3,0:2.08:180.96	1/1:698,0:538.50:180.96	1/1:1885,0:2180.00:180.96	1/1:1331,0:1362.41:180.96	1/1:1305,0:1206.35:180.96	1/1:1262,1:961.71:180.96	1/1:1351,1:1558.06:180.96	1/1:1570,0:2140.37:180.96	1/1:1513,0:1611.04:180.96	1/1:814,1:806.95:180.96	0/0:638,0:35.37:180.96	1/1:910,0:977.26:180.96	1/1:1323,0:1061.49:180.96	0/0:533,1:67.66:180.96	1/1:1375,1:932.37:180.96	1/1:489,0:196.73:180.96	1/1:962,0:614.81:180.96	1/1:1613,0:1536.67:180.96	1/1:980,1:593.90:180.96	1/1:1320,1:1382.77:180.96	1/1:1977,0:1907.84:180.96	1/1:1407,0:1043.82:180.96	1/1:4816,0:8614.22:180.96	1/1:933,0:917.85:180.96	1/1:767,0:429.35:180.96	1/1:1116,0:695.37:180.96	1/1:1444,0:1504.56:180.96	0/0:2,0:1.38:180.96	1/1:1204,0:623.70:180.96	1/1:5115,8:7280.74:180.96	1/1:1348,0:1066.06:180.96	1/1:1799,0:2155.61:180.96	1/1:2369,3:1458.42:180.96	1/1:1653,0:1729.83:180.96	1/1:754,0:520.81:180.96	1/1:678,0:376.64:180.96	1/1:2759,0:3691.44:180.96	1/1:719,0:544.81:180.96	1/1:1457,1:1182.65:180.96	1/1:723,2:635.17:180.96	1/1:1301,0:878.12:180.96	1/1:312,0:336.53:180.96	1/1:1479,1:1485.09:180.96	1/1:1173,1:1056.24:180.96	1/1:1024,0:866.86:180.96	1/1:1114,0:1228.48:180.96	1/1:1671,0:1900.80:180.96	1/1:1567,1:1329.33:180.96	1/1:1180,0:1039.13:180.96	1/1:1141,0:901.59:180.96	1/1:1130,0:860.19:180.96	1/1:848,0:471.43:180.96	1/1:1127,0:698.49:180.96	1/1:1382,0:924.24:180.96	1/1:1350,0:910.15:180.96	1/1:1318,1:1022.28:180.96	1/1:650,0:381.88:180.96	1/1:832,0:331.31:180.96	1/1:1535,0:1235.68:180.96	1/1:457,0:141.61:180.96	1/1:669,0:444.33:180.96	1/1:1340,1:1305.20:180.96	1/1:1086,0:848.00:180.96	1/1:1631,0:1232.48:180.96	1/1:1194,1:1057.34:180.96	0/0:33,0:22.87:180.96	1/1:1818,1:2589.75:180.96	1/1:968,0:873.58:180.96	1/1:963,0:568.95:180.96	1/1:714,0:459.10:180.96	1/1:1028,0:802.62:180.96	1/1:1278,0:887.78:180.96	1/1:603,1:231.81:180.96	1/1:1871,1:2253.85:180.96	1/1:1298,2:1310.98:180.96	1/1:866,0:661.72:180.96
1	564646	var_1251867	C	G	.	PF_FAIL_REPEAT	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	1/1:1054,0:628.23:181.89	1/1:1010,0:634.09:181.89	1/1:2285,0:2723.03:181.89	1/1:665,0:481.01:181.89	1/1:1911,0:2236.18:181.89	1/1:1350,0:1400.94:181.89	1/1:1347,0:1287.71:181.89	1/1:1181,0:816.86:181.89	1/1:1414,0:1689.67:181.89	1/1:1619,0:2256.81:181.89	1/1:1401,1:1389.60:181.89	1/1:864,2:911.53:181.89	0/0:589,0:79.43:181.89	1/1:947,0:1054.57:181.89	1/1:1405,0:1211.52:181.89	0/0:534,0:72.23:181.89	1/1:1370,0:918.47:181.89	0/0:3,0:2.07:181.89	1/1:947,0:590.41:181.89	1/1:1458,0:1242.10:181.89	1/1:973,0:577.46:181.89	1/1:1209,0:1155.92:181.89	1/1:1934,0:1823.90:181.89	1/1:1534,0:1270.25:181.89	1/1:4886,0:8809.86:181.89	1/1:977,0:1005.97:181.89	1/1:711,0:344.37:181.89	1/1:1039,0:573.39:181.89	1/1:1407,0:1429.60:181.89	1/1:995,0:612.31:181.89	1/1:1167,0:568.23:181.89	1/1:5001,4:6989.63:181.89	1/1:1272,0:932.37:181.89	1/1:1752,0:2053.02:181.89	1/1:2366,3:1453.61:181.89	1/1:1876,0:2200.05:181.89	1/1:759,0:529.26:181.89	1/1:645,0:326.31:181.89	1/1:2698,0:3549.60:181.89	1/1:691,0:496.29:181.89	1/1:1403,0:1080.71:181.89	1/1:505,2:266.16:181.89	1/1:1331,1:934.12:181.89	1/1:301,0:313.98:181.89	1/1:1403,0:1329.95:181.89	1/1:1188,0:1079.54:181.89	1/1:994,0:812.03:181.89	1/1:1170,0:1347.43:181.89	1/1:1694,0:1950.07:181.89	1/1:1714,0:1601.30:181.89	1/1:1118,0:924.40:181.89	1/1:1030,0:708.84:181.89	1/1:1128,0:856.67:181.89	1/1:848,0:471.43:181.89	1/1:1103,0:659.96:181.89	1/1:1462,0:1059.78:181.89	1/1:1363,0:931.94:181.89	1/1:1336,0:1048.81:181.89	1/1:603,0:309.27:181.89	1/1:795,0:280.57:181.89	1/1:1484,0:1144.63:181.89	1/1:448,0:129.98:181.89	1/1:694,0:486.25:181.89	1/1:1464,0:1549.45:181.89	1/1:999,0:696.96:181.89	1/1:1618,0:1209.74:181.89	1/1:1273,1:1208.24:181.89	1/1:1550,0:1335.35:181.89	1/1:1858,0:2681.88:181.89	1/1:900,0:746.93:181.89	1/1:903,0:475.65:181.89	1/1:708,0:449.29:181.89	1/1:1041,0:825.80:181.89	1/1:1289,0:906.43:181.89	1/1:595,0:215.87:181.89	1/1:1798,0:2089.39:181.89	1/1:1368,0:1443.15:181.89	1/1:845,0:625.02:181.89
1	564647	var_1083930	G	C	.	PF_FAIL_REPEAT;MISMAPPED_UNPLACEABLE	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	0/0:0,0:0.00:0.84	1/1:0,1:0.70:0.84	0/0:0,0:0.00:0.84	1/1:0,1:0.69:0.84	0/0:1,0:0.70:0.84	0/0:0,0:0.00:0.84	0/0:0,0:0.00:0.84	1/1:0,1:0.70:0.84	0/0:0,0:0.00:0.84	1/1:0,2:1.38:0.84	0/0:0,0:0.00:0.84	0/0:0,0:0.00:0.84	0/0:0,0:0.00:0.84	0/0:1,0:0.69:0.84	0/0:0,0:0.00:0.84	0/0:0,0:0.00:0.84	0/0:1,0:0.69:0.84	0/0:1,0:0.69:0.84	1/1:0,2:1.39:0.84	1/1:0,1:0.70:0.84	0/0:0,0:0.00:0.84	0/0:0,0:0.00:0.84	0/0:0,0:0.00:0.84	0/0:0,0:0.00:0.84	0/0:0,0:0.00:0.84	1/1:0,1:0.69:0.84	0/0:0,0:0.00:0.84	0/0:1,0:0.69:0.84	0/1:1,1:3.85:0.84	0/0:0,0:0.00:0.84	0/0:0,0:0.00:0.84	0/1:2,6:6.01:0.84	0/0:1,0:0.70:0.84	1/1:0,2:1.38:0.84	0/0:4,0:2.77:0.84	0/0:0,0:0.00:0.84	0/0:0,0:0.00:0.84	0/0:0,0:0.00:0.84	0/0:0,0:0.00:0.84	0/0:0,0:0.00:0.84	1/1:0,1:0.70:0.84	0/1:1,3:1.95:0.84	1/1:0,1:0.69:0.84	0/0:0,0:0.00:0.84	0/0:0,0:0.00:0.84	0/0:2,0:1.39:0.84	0/0:0,0:0.00:0.84	1/1:0,1:0.70:0.84	0/0:1,0:0.69:0.84	1/1:0,2:1.38:0.84	0/0:2,0:1.38:0.84	0/0:0,0:0.00:0.84	0/0:1,0:0.70:0.84	1/1:0,1:0.69:0.84	0/0:0,0:0.00:0.84	1/1:0,1:0.70:0.84	1/1:0,1:0.69:0.84	0/0:0,0:0.00:0.84	1/1:0,1:0.69:0.84	1/1:0,1:0.69:0.84	0/0:2,0:1.38:0.84	1/1:0,1:0.69:0.84	1/1:0,1:0.70:0.84	0/0:0,0:0.00:0.84	0/0:0,0:0.00:0.84	0/0:1,0:0.69:0.84	0/1:1,2:3.13:0.84	0/0:0,0:0.00:0.84	0/0:1,0:0.69:0.84	1/1:0,1:0.69:0.84	0/0:0,0:0.00:0.84	0/0:1,0:0.69:0.84	0/1:1,1:3.77:0.84	0/0:0,0:0.00:0.84	1/1:0,1:0.69:0.84	0/0:0,0:0.00:0.84	0/0:0,0:0.00:0.84	1/1:0,1:0.69:0.84
1	564649	var_3885647	C	G	.	PF_FAIL_REPEAT	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	1/1:1092,0:689.41:181.25	1/1:1069,0:731.59:181.25	0/0:3,0:2.08:181.25	1/1:686,0:517.41:181.25	1/1:1924,0:2264.42:181.25	1/1:1357,0:1415.21:181.25	1/1:1326,1:1252.12:181.25	1/1:1273,0:975.67:181.25	1/1:1354,2:1568.87:181.25	1/1:1578,0:2159.28:181.25	1/1:1525,0:1635.83:181.25	1/1:817,0:808.18:181.25	0/0:647,0:26.85:181.25	1/1:909,0:975.18:181.25	1/1:1322,0:1059.69:181.25	0/0:549,0:59.15:181.25	1/1:1408,0:982.35:181.25	1/1:505,0:219.32:181.25	1/1:964,0:618.08:181.25	1/1:1648,0:1605.30:181.25	1/1:986,0:598.22:181.25	1/1:1352,0:1443.31:181.25	1/1:2039,0:2030.50:181.25	1/1:1448,0:1115.71:181.25	1/1:4842,0:8686.77:181.25	1/1:935,0:921.81:181.25	1/1:770,0:434.02:181.25	1/1:1124,0:708.36:181.25	1/1:1452,0:1520.90:181.25	0/0:2,0:1.38:181.25	1/1:1206,0:626.73:181.25	1/1:5235,7:7567.89:181.25	1/1:1349,1:1073.27:181.25	1/1:1788,0:2131.49:181.25	1/1:2404,5:1524.25:181.25	1/1:1702,1:1836.08:181.25	1/1:765,0:539.44:181.25	1/1:660,0:348.99:181.25	1/1:2799,0:3785.18:181.25	1/1:729,0:562.40:181.25	1/1:1490,0:1237.12:181.25	1/1:735,2:657.60:181.25	1/1:1310,0:893.19:181.25	1/1:310,0:332.40:181.25	1/1:1547,1:1622.48:181.25	1/1:1183,1:1075.21:181.25	1/1:1044,0:903.91:181.25	1/1:1119,0:1238.99:181.25	1/1:1659,1:1880.51:181.25	1/1:1554,0:1299.92:181.25	1/1:1220,0:1114.90:181.25	1/1:1161,0:937.50:181.25	1/1:1139,0:876.04:181.25	1/1:863,0:494.83:181.25	1/1:1167,0:763.85:181.25	1/1:1372,0:907.61:181.25	1/1:1370,0:943.73:181.25	1/1:1341,0:1057.74:181.25	1/1:686,0:439.81:181.25	1/1:830,0:328.52:181.25	1/1:1578,0:1313.78:181.25	1/1:463,0:149.46:181.25	1/1:675,1:459.15:181.25	1/1:1318,1:1262.10:181.25	1/1:1091,0:856.89:181.25	1/1:1627,0:1225.47:181.25	1/1:1219,0:1099.34:181.25	0/0:30,0:20.79:181.25	1/1:1850,0:2662.37:181.25	1/1:973,0:883.09:181.25	1/1:955,0:556.29:181.25	1/1:729,0:483.82:181.25	1/1:1023,0:793.74:181.25	1/1:1286,0:901.34:181.25	1/1:632,0:267.19:181.25	1/1:1910,0:2334.70:181.25	1/1:1307,0:1319.35:181.25	1/1:879,0:684.69:181.25
1	564649	var_5791754	C	G	.	PF_FAIL_REPEAT	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	1/1:1051,0:623.45:181.47	1/1:995,1:615.13:181.47	1/1:2294,0:2742.76:181.47	1/1:661,0:474.15:181.47	1/1:1905,1:2228.58:181.47	1/1:1349,0:1398.91:181.47	1/1:1335,0:1264.33:181.47	1/1:1185,0:823.62:181.47	1/1:1425,0:1713.83:181.47	1/1:1624,1:2273.77:181.47	1/1:1418,0:1418.18:181.47	1/1:871,1:921.81:181.47	0/0:588,1:74.77:181.47	1/1:938,0:1035.63:181.47	1/1:1390,0:1183.70:181.47	0/0:536,0:70.51:181.47	1/1:1357,0:896.86:181.47	0/0:2,0:1.39:181.47	1/1:964,0:618.08:181.47	1/1:1470,0:1264.33:181.47	1/1:974,1:584.34:181.47	1/1:1213,0:1163.74:181.47	1/1:1950,0:1855.03:181.47	1/1:1504,0:1215.78:181.47	1/1:4928,0:8927.74:181.47	1/1:959,0:969.67:181.47	1/1:723,0:362.22:181.47	1/1:1070,0:621.83:181.47	1/1:1414,0:1443.71:181.47	1/1:1000,0:620.38:181.47	1/1:1186,0:596.57:181.47	1/1:5010,6:7020.03:181.47	1/1:1264,0:918.55:181.47	1/1:1773,0:2098.71:181.47	1/1:2386,2:1480.74:181.47	1/1:1838,0:2117.96:181.47	1/1:757,0:525.87:181.47	1/1:650,0:333.83:181.47	1/1:2734,0:3633.15:181.47	1/1:689,0:492.87:181.47	1/1:1418,1:1112.79:181.47	1/1:510,0:264.95:181.47	1/1:1322,0:913.39:181.47	1/1:303,0:318.06:181.47	1/1:1397,1:1323.59:181.47	1/1:1185,0:1073.84:181.47	1/1:990,0:804.78:181.47	1/1:1152,0:1308.90:181.47	1/1:1688,0:1937.19:181.47	1/1:1674,0:1524.50:181.47	1/1:1092,0:877.30:181.47	1/1:1035,0:717.28:181.47	1/1:1129,0:858.42:181.47	1/1:866,0:499.54:181.47	1/1:1111,0:672.75:181.47	1/1:1457,0:1051.17:181.47	1/1:1366,0:936.99:181.47	1/1:1323,0:1025.71:181.47	1/1:608,0:316.83:181.47	1/1:801,0:288.69:181.47	1/1:1478,2:1144.40:181.47	1/1:450,0:132.55:181.47	1/1:689,0:477.79:181.47	1/1:1439,0:1498.28:181.47	1/1:1007,0:710.54:181.47	1/1:1627,0:1225.47:181.47	1/1:1278,0:1212.76:181.47	0/0:33,0:22.87:181.47	1/1:1848,0:2657.49:181.47	1/1:916,0:776.28:181.47	1/1:886,0:449.93:181.47	1/1:713,0:457.45:181.47	1/1:1059,0:858.17:181.47	1/1:1289,0:906.43:181.47	1/1:600,0:222.67:181.47	1/1:1773,1:2040.91:181.47	1/1:1377,0:1461.64:181.47	1/1:838,0:612.91:181.47
1	564651	var_2279614	C	G	.	MISMAPPED_UNPLACEABLE	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	0/0:1,0:0.70:23.47	0/0:0,0:0.00:23.47	0/0:41,0:28.42:23.47	0/0:1,0:0.69:23.47	0/0:2,0:1.38:23.47	0/0:0,0:0.00:23.47	0/0:0,0:0.00:23.47	1/1:0,2:1.39:23.47	1/1:0,3:2.08:23.47	0/0:0,0:0.00:23.47	0/1:1,1:3.88:23.47	0/1:1,1:3.33:23.47	0/0:0,0:0.00:23.47	1/1:0,2:1.39:23.47	0/0:0,0:0.00:23.47	0/0:1,0:0.69:23.47	1/1:0,1:0.69:23.47	0/0:0,0:0.00:23.47	1/1:0,1:0.69:23.47	0/0:0,0:0.00:23.47	0/0:0,0:0.00:23.47	0/0:0,0:0.00:23.47	0/0:0,0:0.00:23.47	0/0:0,0:0.00:23.47	0/0:0,0:0.00:23.47	0/0:0,0:0.00:23.47	0/0:0,0:0.00:23.47	0/0:0,0:0.00:23.47	0/0:0,0:0.00:23.47	1/1:0,2:1.38:23.47	0/0:0,0:0.00:23.47	1/1:0,6:4.16:23.47	0/0:0,0:0.00:23.47	0/0:2,0:1.38:23.47	0/1:3,1:3.39:23.47	0/1:2,1:3.29:23.47	0/0:0,0:0.00:23.47	0/0:0,0:0.00:23.47	0/0:1,0:0.69:23.47	0/0:0,0:0.00:23.47	1/1:0,1:0.70:23.47	1/1:0,1:0.69:23.47	0/0:1,0:0.69:23.47	0/0:0,0:0.00:23.47	0/0:0,0:0.00:23.47	0/0:1,0:0.69:23.47	0/0:0,0:0.00:23.47	0/0:1,0:0.70:23.47	0/0:1,0:0.69:23.47	0/0:0,0:0.00:23.47	0/0:1,0:0.70:23.47	0/0:0,0:0.00:23.47	0/0:0,0:0.00:23.47	1/1:0,1:0.69:23.47	0/0:0,0:0.00:23.47	0/0:0,0:0.00:23.47	1/1:0,1:0.69:23.47	0/0:0,0:0.00:23.47	0/0:1,0:0.69:23.47	0/1:1,2:3.25:23.47	1/1:0,1:0.70:23.47	1/1:0,1:0.69:23.47	0/0:0,0:0.00:23.47	0/0:0,0:0.00:23.47	0/0:0,0:0.00:23.47	0/0:1,0:0.69:23.47	1/1:0,2:1.39:23.47	1/1:0,1:0.70:23.47	0/0:0,0:0.00:23.47	0/0:2,0:1.39:23.47	0/0:0,0:0.00:23.47	0/0:0,0:0.00:23.47	0/0:0,0:0.00:23.47	0/0:0,0:0.00:23.47	0/0:0,0:0.00:23.47	1/1:0,1:0.70:23.47	1/1:0,1:0.70:23.47	0/0:1,0:0.69:23.47
1	564653	var_1535672	A	C	.	PF_FAIL_REPEAT;MISMAPPED_UNPLACEABLE	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	0/0:0,0:0.00:4.03	0/0:0,0:0.00:4.03	0/0:0,0:0.00:4.03	0/0:0,0:0.00:4.03	0/0:0,0:0.00:4.03	0/0:0,0:0.00:4.03	0/0:0,0:0.00:4.03	0/0:0,0:0.00:4.03	0/0:0,0:0.00:4.03	0/0:1,0:0.69:4.03	0/0:0,0:0.00:4.03	0/0:0,0:0.00:4.03	0/0:0,0:0.00:4.03	0/0:0,0:0.00:4.03	0/0:0,0:0.00:4.03	0/0:2,0:1.39:4.03	0/0:0,0:0.00:4.03	0/0:0,0:0.00:4.03	0/0:0,0:0.00:4.03	0/0:0,0:0.00:4.03	1/1:0,1:0.69:4.03	0/0:0,0:0.00:4.03	0/0:0,0:0.00:4.03	1/1:0,1:0.69:4.03	0/0:1,0:0.69:4.03	0/0:0,0:0.00:4.03	0/0:0,0:0.00:4.03	0/0:2,0:1.38:4.03	0/0:0,0:0.00:4.03	0/0:0,0:0.00:4.03	0/0:0,0:0.00:4.03	0/1:5,4:15.08:4.03	0/0:0,0:0.00:4.03	1/1:0,1:0.69:4.03	0/1:2,1:4.08:4.03	0/0:0,0:0.00:4.03	0/0:0,0:0.00:4.03	1/1:0,1:0.69:4.03	0/0:0,0:0.00:4.03	0/0:0,0:0.00:4.03	0/0:1,0:0.70:4.03	0/0:1,0:0.69:4.03	0/0:0,0:0.00:4.03	0/0:0,0:0.00:4.03	0/0:0,0:0.00:4.03	1/1:0,2:1.39:4.03	0/0:0,0:0.00:4.03	0/0:0,0:0.00:4.03	1/1:0,1:0.69:4.03	0/1:1,2:3.43:4.03	0/0:0,0:0.00:4.03	0/0:1,0:0.70:4.03	0/1:2,1:3.19:4.03	1/1:0,1:0.69:4.03	0/0:0,0:0.00:4.03	0/0:0,0:0.00:4.03	1/1:0,1:0.69:4.03	0/0:0,0:0.00:4.03	0/0:0,0:0.00:4.03	0/0:1,0:0.69:4.03	0/0:0,0:0.00:4.03	0/0:0,0:0.00:4.03	1/1:0,1:0.70:4.03	0/0:0,0:0.00:4.03	0/0:1,0:0.69:4.03	0/0:0,0:0.00:4.03	1/1:0,1:0.70:4.03	0/0:0,0:0.00:4.03	0/0:0,0:0.00:4.03	0/1:1,1:3.59:4.03	0/0:0,0:0.00:4.03	0/0:0,0:0.00:4.03	0/0:0,0:0.00:4.03	0/1:1,1:4.07:4.03	0/0:0,0:0.00:4.03	0/0:1,0:0.70:4.03	1/1:0,1:0.70:4.03	0/0:0,0:0.00:4.03
1	564657	var_1929825	C	A	.	PF_FAIL_REPEAT	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	1/1:1115,0:727.09:184.61	1/1:1075,0:741.69:184.61	1/1:2464,0:3121.84:184.61	1/1:727,1:595.09:184.61	1/1:1905,1:2228.58:184.61	1/1:1411,1:1531.60:184.61	1/1:1350,0:1293.58:184.61	1/1:1263,0:958.08:184.61	1/1:1400,0:1659.05:184.61	1/1:1649,1:2333.83:184.61	1/1:1595,0:1782.32:184.61	1/1:803,1:785.24:184.61	0/0:648,0:25.90:184.61	1/1:924,0:1006.33:184.61	1/1:1364,0:1135.89:184.61	0/0:550,1:52.84:184.61	1/1:1401,0:970.51:184.61	1/1:521,0:242.40:184.61	1/1:984,0:651.04:184.61	1/1:1702,1:1718.08:184.61	1/1:1011,1:643.89:184.61	1/1:1363,0:1466.07:184.61	1/1:2097,0:2146.95:184.61	1/1:1506,0:1219.39:184.61	1/1:4862,1:8748.36:184.61	1/1:970,0:991.82:184.61	1/1:816,0:507.07:184.61	1/1:1146,0:744.35:184.61	1/1:1482,0:1582.55:184.61	0/0:1,0:0.69:184.61	1/1:1181,0:589.08:184.61	1/1:5295,10:7726.32:184.61	1/1:1411,0:1180.15:184.61	1/1:1854,0:2277.22:184.61	1/1:2426,1:1540.15:184.61	1/1:1926,1:2314.60:184.61	1/1:803,0:604.97:184.61	1/1:691,1:401.89:184.61	1/1:2879,0:3974.38:184.61	1/1:731,1:570.76:184.61	1/1:1518,1:1294.03:184.61	1/1:742,2:670.78:184.61	1/1:1302,1:885.29:184.61	1/1:311,0:334.47:184.61	1/1:1621,0:1770.08:184.61	1/1:1229,0:1158.37:184.61	1/1:1085,0:981.05:184.61	1/1:1145,0:1293.98:184.61	1/1:1674,1:1912.50:184.61	1/1:1619,0:1420.47:184.61	1/1:1272,0:1215.34:184.61	1/1:1235,0:1073.31:184.61	1/1:1155,0:904.40:184.61	1/1:887,1:538.01:184.61	1/1:1210,1:841.04:184.61	1/1:1384,1:933.14:184.61	1/1:1425,0:1037.54:184.61	1/1:1337,0:1050.60:184.61	1/1:721,0:497.93:184.61	1/1:834,0:334.10:184.61	1/1:1637,0:1422.83:184.61	1/1:484,0:177.55:184.61	1/1:679,0:460.98:184.61	1/1:1303,0:1227.69:184.61	1/1:1117,0:903.53:184.61	1/1:1581,0:1145.60:184.61	1/1:1234,0:1127.91:184.61	1/1:1688,0:1597.85:184.61	1/1:1912,0:2814.48:184.61	1/1:1034,0:1001.08:184.61	1/1:954,0:554.72:184.61	1/1:736,0:495.47:184.61	1/1:1066,0:870.84:184.61	1/1:1260,0:857.46:184.61	1/1:645,0:285.74:184.61	1/1:1943,0:2408.25:184.61	1/1:1355,2:1426.18:184.61	1/1:903,0:727.61:184.61
1	564660	var_1964368	C	G	.	PF_FAIL_REPEAT	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	1/1:1082,0:673.18:179.45	1/1:1026,0:660.20:179.45	0/0:5,0:3.46:179.45	1/1:666,0:482.72:179.45	1/1:1903,0:2218.86:179.45	1/1:1288,1:1281.40:179.45	1/1:1315,0:1225.60:179.45	1/1:1227,0:895.40:179.45	1/1:1366,0:1585.28:179.45	1/1:1599,0:2209.10:179.45	1/1:1440,0:1462.30:179.45	1/1:830,1:838.80:179.45	0/0:592,0:76.85:179.45	1/1:898,0:952.50:179.45	1/1:1276,0:977.76:179.45	0/0:530,0:75.65:179.45	1/1:1357,0:896.86:179.45	0/0:0,0:0.00:179.45	1/1:962,0:614.81:179.45	1/1:1515,1:1354.03:179.45	1/1:965,0:564.78:179.45	1/1:1235,0:1206.97:179.45	1/1:1942,0:1839.45:179.45	1/1:1326,0:905.34:179.45	1/1:4921,0:8908.06:179.45	1/1:900,0:853.11:179.45	1/1:723,0:362.22:179.45	1/1:1071,0:623.41:179.45	1/1:1418,0:1451.79:179.45	1/1:997,0:615.54:179.45	1/1:1173,0:577.15:179.45	1/1:4976,7:6942.92:179.45	1/1:1281,0:947.97:179.45	1/1:1759,0:2068.22:179.45	1/1:2408,0:1504.71:179.45	1/1:1647,0:1717.58:179.45	1/1:746,0:507.36:179.45	1/1:651,1:340.31:179.45	1/1:2696,0:3544.97:179.45	1/1:698,0:508.31:179.45	1/1:1417,0:1105.53:179.45	1/1:510,0:264.95:179.45	1/1:1321,0:911.70:179.45	1/1:300,0:311.95:179.45	1/1:1394,0:1312.47:179.45	1/1:1180,0:1064.33:179.45	1/1:968,0:765.23:179.45	1/1:1125,1:1256.55:179.45	1/1:1665,0:1888.01:179.45	1/1:1576,0:1340.42:179.45	1/1:1112,0:913.47:179.45	1/1:1048,0:739.32:179.45	1/1:1102,0:811.31:179.45	1/1:839,0:457.51:179.45	1/1:1074,0:614.10:179.45	1/1:1381,0:922.58:179.45	1/1:1358,0:923.55:179.45	1/1:1300,0:985.15:179.45	1/1:617,0:330.52:179.45	1/1:818,0:311.91:179.45	1/1:1491,0:1157.02:179.45	1/1:448,0:129.98:179.45	1/1:663,0:434.40:179.45	1/1:1398,1:1420.53:179.45	1/1:1025,0:741.33:179.45	1/1:1631,0:1232.48:179.45	1/1:1218,0:1097.44:179.45	0/0:35,0:24.26:179.45	1/1:1840,0:2638.02:179.45	1/1:916,1:781.26:179.45	1/1:925,0:509.42:179.45	1/1:697,0:431.46:179.45	1/1:1041,0:825.80:179.45	1/1:1274,0:881.02:179.45	1/1:574,0:187.75:179.45	1/1:1791,0:2074.29:179.45	1/1:1345,0:1396.15:179.45	1/1:810,0:565.02:179.45
1	564660	var_5194352	T	G	.	PF_FAIL_REPEAT;MISMAPPED_UNPLACEABLE	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	0/0:0,0:0.00:4.68	0/0:0,0:0.00:4.68	0/1:2,1:3.47:4.68	1/1:0,1:0.69:4.68	0/0:0,0:0.00:4.68	0/0:0,0:0.00:4.68	1/1:0,1:0.70:4.68	0/0:0,0:0.00:4.68	0/0:0,0:0.00:4.68	0/0:0,0:0.00:4.68	0/0:1,0:0.69:4.68	1/1:0,2:1.39:4.68	0/0:0,0:0.00:4.68	0/0:0,0:0.00:4.68	0/0:1,0:0.69:4.68	0/0:0,0:0.00:4.68	0/0:1,0:0.69:4.68	0/0:0,0:0.00:4.68	0/0:0,0:0.00:4.68	0/0:0,0:0.00:4.68	0/0:1,0:0.69:4.68	0/0:0,0:0.00:4.68	0/1:2,1:3.54:4.68	0/0:0,0:0.00:4.68	0/0:0,0:0.00:4.68	0/0:0,0:0.00:4.68	0/0:1,0:0.69:4.68	0/0:0,0:0.00:4.68	0/0:0,0:0.00:4.68	0/0:0,0:0.00:4.68	0/0:0,0:0.00:4.68	0/1:5,6:18.22:4.68	0/0:0,0:0.00:4.68	0/0:1,0:0.69:4.68	0/1:4,2:7.48:4.68	1/1:0,1:0.69:4.68	0/0:0,0:0.00:4.68	0/0:0,0:0.00:4.68	0/0:0,0:0.00:4.68	0/0:0,0:0.00:4.68	0/0:0,0:0.00:4.68	0/1:1,1:3.33:4.68	0/0:0,0:0.00:4.68	0/0:0,0:0.00:4.68	1/1:0,1:0.69:4.68	0/0:0,0:0.00:4.68	0/0:0,0:0.00:4.68	0/0:0,0:0.00:4.68	0/0:2,0:1.38:4.68	0/0:0,0:0.00:4.68	0/0:0,0:0.00:4.68	0/0:0,0:0.00:4.68	0/0:0,0:0.00:4.68	0/0:1,0:0.69:4.68	0/0:0,0:0.00:4.68	0/0:0,0:0.00:4.68	1/1:0,1:0.69:4.68	0/0:1,0:0.69:4.68	0/0:0,0:0.00:4.68	0/0:0,0:0.00:4.68	0/0:0,0:0.00:4.68	0/0:0,0:0.00:4.68	0/0:0,0:0.00:4.68	1/1:0,1:0.69:4.68	0/0:0,0:0.00:4.68	1/1:0,2:1.39:4.68	0/0:0,0:0.00:4.68	0/0:0,0:0.00:4.68	0/0:0,0:0.00:4.68	0/0:0,0:0.00:4.68	1/1:0,1:0.70:4.68	0/0:0,0:0.00:4.68	0/0:1,0:0.69:4.68	0/1:1,1:4.07:4.68	0/0:0,0:0.00:4.68	0/1:1,1:3.95:4.68	0/0:0,0:0.00:4.68	1/1:0,1:0.69:4.68
1	564661	var_2127575	C	A	.	PF_FAIL_REPEAT	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	1/1:1086,1:685.02:179.93	1/1:1025,0:658.56:179.93	0/0:4,0:2.77:179.93	1/1:666,0:482.72:179.93	1/1:1911,4:2254.55:179.93	1/1:1283,0:1266.30:179.93	1/1:1317,1:1234.71:179.93	1/1:1227,0:895.40:179.93	1/1:1355,0:1561.58:179.93	1/1:1592,0:2192.47:179.93	1/1:1441,1:1469.57:179.93	1/1:827,1:832.81:179.93	0/0:595,0:74.25:179.93	1/1:889,0:934.03:179.93	1/1:1271,0:968.96:179.93	0/0:536,0:70.51:179.93	1/1:1352,0:888.57:179.93	1/1:0,0:0.00:179.93	1/1:958,0:608.28:179.93	1/1:1518,0:1354.26:179.93	1/1:970,1:577.99:179.93	1/1:1237,0:1210.92:179.93	1/1:1954,0:1862.83:179.93	1/1:1329,0:910.39:179.93	1/1:4894,1:8837.98:179.93	1/1:900,0:853.11:179.93	1/1:726,0:366.72:179.93	1/1:1077,0:632.90:179.93	1/1:1419,0:1453.80:179.93	1/1:997,2:625.43:179.93	1/1:1172,0:575.65:179.93	1/1:4992,3:6963.38:179.93	1/1:1277,0:941.02:179.93	1/1:1743,0:2033.52:179.93	1/1:2415,1:1522.25:179.93	1/1:1641,0:1705.35:179.93	1/1:748,0:510.71:179.93	1/1:654,0:339.88:179.93	1/1:2688,0:3526.47:179.93	1/1:692,1:502.83:179.93	1/1:1418,1:1112.79:179.93	1/1:506,0:258.91:179.93	1/1:1317,0:904.97:179.93	1/1:298,1:311.58:179.93	1/1:1385,0:1295.05:179.93	1/1:1173,2:1060.71:179.93	1/1:967,0:763.44:179.93	1/1:1116,0:1232.68:179.93	1/1:1665,0:1888.01:179.93	1/1:1563,0:1316.45:179.93	1/1:1117,2:932.28:179.93	1/1:1045,0:734.23:179.93	1/1:1096,0:800.93:179.93	1/1:842,0:462.14:179.93	1/1:1083,0:628.25:179.93	1/1:1387,0:932.58:179.93	1/1:1359,0:925.22:179.93	1/1:1296,0:978.14:179.93	1/1:622,0:338.20:179.93	1/1:828,0:325.74:179.93	1/1:1492,0:1158.79:179.93	1/1:444,0:124.87:179.93	1/1:658,0:426.16:179.93	1/1:1409,0:1437.44:179.93	1/1:1022,0:736.18:179.93	1/1:1621,0:1214.97:179.93	1/1:1205,0:1072.84:179.93	0/0:35,0:24.26:179.93	1/1:1825,0:2601.62:179.93	1/1:919,0:781.82:179.93	1/1:937,0:528.05:179.93	1/1:688,0:416.99:179.93	1/1:1040,0:824.01:179.93	1/1:1274,0:881.02:179.93	1/1:573,0:186.43:179.93	1/1:1803,0:2100.19:179.93	1/1:1331,1:1372.89:179.93	1/1:812,0:568.41:179.93
1	564662	var_5683895	C	G	.	PF_FAIL_REPEAT;MISMAPPED_UNPLACEABLE	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	0/0:0,0:0.00:1.38	0/0:0,0:0.00:1.38	0/0:0,0:0.00:1.38	0/0:0,0:0.00:1.38	1/1:0,1:0.70:1.38	0/0:0,0:0.00:1.38	0/0:1,0:0.70:1.38	0/0:0,0:0.00:1.38	0/0:1,0:0.70:1.38	0/0:0,0:0.00:1.38	1/1:0,1:0.69:1.38	0/1:1,2:2.64:1.38	0/0:0,0:0.00:1.38	0/0:2,0:1.39:1.38	0/0:0,0:0.00:1.38	0/0:1,0:0.69:1.38	0/0:0,0:0.00:1.38	0/0:0,0:0.00:1.38	0/0:0,0:0.00:1.38	0/0:0,0:0.00:1.38	1/1:0,1:0.69:1.38	0/0:0,0:0.00:1.38	0/0:0,0:0.00:1.38	0/0:0,0:0.00:1.38	0/0:2,0:1.39:1.38	0/0:1,0:0.69:1.38	0/0:0,0:0.00:1.38	0/0:1,0:0.69:1.38	0/0:0,0:0.00:1.38	0/0:1,0:0.69:1.38	0/0:0,0:0.00:1.38	0/1:5,6:18.22:1.38	0/0:1,0:0.70:1.38	0/0:1,0:0.69:1.38	0/1:3,3:12.54:1.38	0/0:0,0:0.00:1.38	0/0:0,0:0.00:1.38	0/0:0,0:0.00:1.38	0/0:1,0:0.69:1.38	0/1:1,1:3.44:1.38	0/1:2,1:3.40:1.38	0/0:1,0:0.69:1.38	0/0:0,0:0.00:1.38	0/0:0,0:0.00:1.38	0/0:0,0:0.00:1.38	0/0:0,0:0.00:1.38	0/0:0,0:0.00:1.38	0/0:0,0:0.00:1.38	0/0:10,0:6.93:1.38	0/0:0,0:0.00:1.38	0/0:0,0:0.00:1.38	0/0:1,0:0.70:1.38	1/1:0,1:0.70:1.38	0/1:2,1:3.11:1.38	0/0:0,0:0.00:1.38	0/0:0,0:0.00:1.38	0/0:0,0:0.00:1.38	0/0:0,0:0.00:1.38	0/0:1,0:0.69:1.38	0/0:0,0:0.00:1.38	0/1:1,1:4.15:1.38	0/0:0,0:0.00:1.38	0/0:0,0:0.00:1.38	0/0:0,0:0.00:1.38	0/0:0,0:0.00:1.38	0/0:1,0:0.69:1.38	0/1:1,1:3.82:1.38	0/0:0,0:0.00:1.38	0/0:2,0:1.39:1.38	0/0:0,0:0.00:1.38	0/0:0,0:0.00:1.38	1/1:0,1:0.69:1.38	0/0:0,0:0.00:1.38	0/0:0,0:0.00:1.38	0/0:0,0:0.00:1.38	0/0:0,0:0.00:1.38	0/0:0,0:0.00:1.38	0/0:1,0:0.69:1.38
1	564665	var_2041513	T	G	.	PF_FAIL_REPEAT	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	1/1:1080,0:669.94:178.27	1/1:1019,2:658.64:178.27	0/0:3,0:2.08:178.27	1/1:660,0:472.43:178.27	1/1:1854,1:2118.86:178.27	1/1:1267,0:1234.66:178.27	1/1:1292,0:1181.44:178.27	1/1:1228,0:897.13:178.27	1/1:1344,0:1537.99:178.27	1/1:1547,0:2086.25:178.27	1/1:1419,0:1420.19:178.27	1/1:807,3:800.77:178.27	0/0:609,0:61.92:178.27	1/1:871,0:897.39:178.27	1/1:1264,0:956.67:178.27	0/0:522,0:82.40:178.27	1/1:1334,0:858.92:178.27	1/1:0,0:0.00:178.27	1/1:968,0:624.64:178.27	1/1:1488,0:1297.87:178.27	1/1:946,0:534.92:178.27	1/1:1235,0:1206.97:178.27	1/1:1948,0:1851.13:178.27	1/1:1319,0:893.61:178.27	1/1:4771,1:8494.67:178.27	1/1:898,0:849.22:178.27	1/1:721,0:359.23:178.27	1/1:1053,0:595.16:178.27	1/1:1419,0:1453.80:178.27	0/0:1,0:0.69:178.27	1/1:1161,0:559.34:178.27	1/1:4990,1:6948.13:178.27	1/1:1261,0:913.38:178.27	1/1:1714,1:1976.30:178.27	1/1:2376,1:1459.15:178.27	1/1:1619,0:1660.69:178.27	1/1:739,0:495.67:178.27	1/1:662,0:352.04:178.27	1/1:2666,0:3475.74:178.27	1/1:701,0:513.49:178.27	1/1:1416,0:1103.75:178.27	1/1:729,1:642.33:178.27	1/1:1303,0:881.46:178.27	1/1:294,0:299.83:178.27	1/1:1391,0:1306.65:178.27	1/1:1138,0:985.34:178.27	1/1:952,0:736.78:178.27	1/1:1088,0:1174.21:178.27	1/1:1637,0:1828.56:178.27	1/1:1520,0:1237.95:178.27	1/1:1119,0:926.23:178.27	1/1:1033,0:713.91:178.27	1/1:1101,0:809.59:178.27	1/1:815,0:420.88:178.27	1/1:1091,0:640.89:178.27	1/1:1359,0:886.12:178.27	1/1:1345,0:901.81:178.27	1/1:1307,0:997.45:178.27	1/1:611,0:321.37:178.27	1/1:809,0:299.57:178.27	1/1:1486,0:1148.15:178.27	1/1:442,0:122.33:178.27	1/1:648,0:409.83:178.27	1/1:1362,0:1343.41:178.27	1/1:1014,0:722.48:178.27	1/1:1588,0:1157.66:178.27	1/1:1168,0:1003.59:178.27	0/0:29,0:20.10:178.27	1/1:1801,0:2543.61:178.27	1/1:940,0:820.83:178.27	1/1:915,0:494.00:178.27	1/1:685,0:412.20:178.27	1/1:995,0:744.52:178.27	1/1:1277,0:886.09:178.27	1/1:572,0:185.11:178.27	1/1:1780,0:2050.60:178.27	1/1:1269,1:1248.85:178.27	1/1:803,0:553.21:178.27
1	564668	var_3514141	T	C	.	PF_FAIL_REPEAT	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	1/1:1094,0:692.67:185.13	1/1:1102,0:787.56:185.13	1/1:2458,1:3113.80:185.13	1/1:722,1:586.08:185.13	1/1:1875,0:2158.48:185.13	1/1:1440,0:1587.01:185.13	1/1:1446,0:1484.61:185.13	1/1:1276,0:980.97:185.13	1/1:1484,0:1844.83:185.13	1/1:1712,0:2481.83:185.13	1/1:1665,0:1931.87:185.13	1/1:774,1:728.71:185.13	0/0:650,0:23.99:185.13	1/1:1003,0:1174.34:185.13	1/1:1270,0:967.19:185.13	0/0:564,0:45.66:185.13	1/1:1374,1:930.70:185.13	1/1:501,0:213.62:185.13	1/1:989,1:664.57:185.13	1/1:1704,0:1716.65:185.13	1/1:1002,0:623.98:185.13	1/1:1367,0:1474.37:185.13	1/1:2133,0:2220.04:185.13	1/1:1438,0:1098.07:185.13	1/1:4746,0:8419.59:185.13	1/1:982,0:1016.11:185.13	1/1:830,0:529.83:185.13	1/1:1162,1:776.20:185.13	1/1:1489,0:1597.02:185.13	1/1:1134,2:855.48:185.13	1/1:1140,0:528.49:185.13	1/1:5528,3:8272.56:185.13	1/1:1429,0:1213.27:185.13	1/1:1950,0:2493.36:185.13	1/1:2363,2:1443.73:185.13	1/1:1924,0:2304.84:185.13	1/1:814,0:624.28:185.13	1/1:713,0:431.78:185.13	1/1:2686,1:3521.86:185.13	1/1:735,0:573.02:185.13	1/1:1536,2:1332.16:185.13	1/1:725,0:630.14:185.13	1/1:1284,0:849.81:185.13	1/1:307,0:326.24:185.13	1/1:1639,0:1807.79:185.13	1/1:1279,0:1256.33:185.13	1/1:1112,0:1032.70:185.13	1/1:1113,1:1231.30:185.13	1/1:1711,0:1986.68:185.13	1/1:1634,0:1448.66:185.13	1/1:1273,0:1217.29:185.13	1/1:1257,0:1114.56:185.13	1/1:1163,1:923.94:185.13	1/1:940,0:618.98:185.13	1/1:1198,0:815.44:185.13	1/1:1370,0:904.30:185.13	1/1:1435,1:1060.36:185.13	1/1:1313,0:1008.03:185.13	1/1:730,0:513.16:185.13	1/1:786,0:268.49:185.13	1/1:1667,0:1479.11:185.13	1/1:478,0:169.43:185.13	1/1:684,0:469.37:185.13	1/1:1271,0:1166.03:185.13	1/1:1173,0:1006.01:185.13	1/1:1589,0:1159.39:185.13	1/1:1311,1:1282.60:185.13	1/1:1738,0:1695.79:185.13	1/1:2001,1:3041.42:185.13	1/1:1055,0:1042.54:185.13	1/1:988,0:608.94:185.13	1/1:726,0:478.85:185.13	1/1:1083,0:901.80:185.13	1/1:1230,1:812.96:185.13	1/1:645,0:285.74:185.13	1/1:1999,2:2544.32:185.13	1/1:1430,0:1571.76:185.13	1/1:919,0:756.57:185.13
1	564669	var_3636470	A	C	.	PF_FAIL_REPEAT	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	1/1:1085,0:678.03:179.53	1/1:1053,0:704.82:179.53	0/0:2,0:1.39:179.53	1/1:682,0:510.43:179.53	1/1:1901,0:2214.53:179.53	1/1:1311,0:1322.16:179.53	1/1:1290,1:1182.87:179.53	1/1:1261,0:954.57:179.53	1/1:1339,0:1527.29:179.53	1/1:1562,0:2121.51:179.53	1/1:1481,0:1545.40:179.53	1/1:813,0:800.25:179.53	0/0:635,0:38.17:179.53	1/1:883,1:926.52:179.53	1/1:1285,0:993.67:179.53	0/0:540,0:67.05:179.53	1/1:1351,0:886.92:179.53	0/0:0,0:0.00:179.53	1/1:961,0:613.18:179.53	1/1:1566,0:1445.71:179.53	1/1:974,0:579.06:179.53	1/1:1273,0:1282.56:179.53	1/1:1967,0:1888.23:179.53	1/1:1350,0:945.87:179.53	1/1:4818,1:8625.48:179.53	1/1:923,0:898.10:179.53	1/1:743,0:392.41:179.53	1/1:1085,0:645.60:179.53	1/1:1440,0:1496.42:179.53	0/0:2,0:1.38:179.53	1/1:1204,0:623.70:179.53	1/1:5071,4:7157.59:179.53	1/1:1319,1:1019.95:179.53	1/1:1729,1:2008.57:179.53	1/1:2377,2:1466.23:179.53	1/1:1669,0:1762.62:179.53	1/1:735,0:489.02:179.53	1/1:674,0:370.46:179.53	1/1:2696,0:3544.97:179.53	1/1:700,0:511.76:179.53	1/1:1432,0:1132.26:179.53	1/1:730,0:639.48:179.53	1/1:1306,0:886.48:179.53	1/1:300,0:311.95:179.53	1/1:1460,1:1447.26:179.53	1/1:1146,1:1005.45:179.53	1/1:998,1:824.37:179.53	1/1:1108,0:1215.91:179.53	1/1:1649,1:1859.26:179.53	1/1:1557,0:1305.43:179.53	1/1:1151,0:985.05:179.53	1/1:1079,0:792.53:179.53	1/1:1124,0:849.65:179.53	1/1:821,0:429.98:179.53	1/1:1109,0:669.55:179.53	1/1:1370,0:904.30:179.53	1/1:1354,0:916.84:179.53	1/1:1310,0:1002.74:179.53	1/1:631,0:352.10:179.53	1/1:811,0:302.31:179.53	1/1:1527,0:1221.28:179.53	1/1:451,0:133.83:179.53	1/1:664,0:436.05:179.53	1/1:1347,0:1313.75:179.53	1/1:1058,0:798.60:179.53	1/1:1607,0:1190.58:179.53	1/1:1172,2:1020.75:179.53	0/0:31,0:21.49:179.53	1/1:1820,1:2594.59:179.53	1/1:966,0:869.78:179.53	1/1:944,0:538.99:179.53	1/1:699,0:434.69:179.53	1/1:1015,0:779.60:179.53	1/1:1286,0:901.34:179.53	1/1:596,0:217.23:179.53	1/1:1834,0:2167.50:179.53	1/1:1277,0:1259.51:179.53	1/1:828,0:595.70:179.53
1	564672	var_96626	C	G	.	PF_FAIL_REPEAT;MISMAPPED_UNPLACEABLE	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	1/1:0,1:0.70:1.96	0/0:0,0:0.00:1.96	0/0:0,0:0.00:1.96	0/0:0,0:0.00:1.96	0/0:1,0:0.70:1.96	0/0:0,0:0.00:1.96	0/0:0,0:0.00:1.96	0/0:0,0:0.00:1.96	0/0:0,0:0.00:1.96	1/1:0,2:1.38:1.96	0/0:1,0:0.69:1.96	1/1:0,1:0.69:1.96	0/0:0,0:0.00:1.96	0/0:0,0:0.00:1.96	0/0:0,0:0.00:1.96	0/0:0,0:0.00:1.96	0/0:0,0:0.00:1.96	0/0:0,0:0.00:1.96	0/0:0,0:0.00:1.96	1/1:0,1:0.70:1.96	0/0:0,0:0.00:1.96	0/0:0,0:0.00:1.96	1/1:0,1:0.69:1.96	0/0:0,0:0.00:1.96	0/0:0,0:0.00:1.96	0/0:0,0:0.00:1.96	0/0:0,0:0.00:1.96	0/0:0,0:0.00:1.96	0/0:0,0:0.00:1.96	0/0:0,0:0.00:1.96	0/0:0,0:0.00:1.96	0/1:6,6:21.85:1.96	0/0:0,0:0.00:1.96	0/0:0,0:0.00:1.96	0/1:3,3:12.54:1.96	0/0:0,0:0.00:1.96	1/1:0,1:0.70:1.96	0/0:0,0:0.00:1.96	0/0:0,0:0.00:1.96	0/0:0,0:0.00:1.96	0/0:0,0:0.00:1.96	0/0:2,0:1.39:1.96	1/1:0,1:0.69:1.96	0/0:0,0:0.00:1.96	0/0:0,0:0.00:1.96	0/0:0,0:0.00:1.96	0/0:0,0:0.00:1.96	0/0:0,0:0.00:1.96	0/0:1,0:0.69:1.96	0/0:0,0:0.00:1.96	0/0:0,0:0.00:1.96	0/0:0,0:0.00:1.96	1/1:0,1:0.70:1.96	0/0:1,0:0.69:1.96	0/0:0,0:0.00:1.96	0/0:0,0:0.00:1.96	0/0:1,0:0.69:1.96	0/0:0,0:0.00:1.96	0/0:0,0:0.00:1.96	0/0:0,0:0.00:1.96	0/0:0,0:0.00:1.96	0/0:0,0:0.00:1.96	0/0:0,0:0.00:1.96	0/0:0,0:0.00:1.96	0/0:0,0:0.00:1.96	0/0:0,0:0.00:1.96	0/0:2,0:1.39:1.96	0/0:0,0:0.00:1.96	0/1:1,1:3.70:1.96	0/0:1,0:0.69:1.96	0/0:0,0:0.00:1.96	0/0:0,0:0.00:1.96	0/0:0,0:0.00:1.96	0/0:0,0:0.00:1.96	0/0:0,0:0.00:1.96	0/0:1,0:0.70:1.96	0/0:1,0:0.70:1.96	0/0:0,0:0.00:1.96
1	564673	var_4571722	C	G	.	PF_FAIL_REPEAT;MISMAPPED_UNPLACEABLE	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	1/1:0,1:0.70:2.29	0/0:0,0:0.00:2.29	0/0:0,0:0.00:2.29	0/0:1,0:0.69:2.29	1/1:0,1:0.70:2.29	0/0:0,0:0.00:2.29	0/0:0,0:0.00:2.29	0/0:0,0:0.00:2.29	0/0:1,0:0.70:2.29	0/0:0,0:0.00:2.29	1/1:0,1:0.69:2.29	0/1:1,1:3.33:2.29	0/0:0,0:0.00:2.29	0/0:0,0:0.00:2.29	0/0:0,0:0.00:2.29	0/0:0,0:0.00:2.29	0/0:1,0:0.69:2.29	0/0:0,0:0.00:2.29	0/0:0,0:0.00:2.29	0/0:0,0:0.00:2.29	0/0:0,0:0.00:2.29	0/0:0,0:0.00:2.29	0/0:0,0:0.00:2.29	0/0:0,0:0.00:2.29	1/1:0,1:0.69:2.29	0/0:0,0:0.00:2.29	0/0:0,0:0.00:2.29	0/0:1,0:0.69:2.29	0/0:1,0:0.69:2.29	0/0:0,0:0.00:2.29	0/0:0,0:0.00:2.29	0/1:1,5:1.96:2.29	0/0:0,0:0.00:2.29	0/0:0,0:0.00:2.29	0/1:2,1:4.08:2.29	1/1:0,2:1.39:2.29	0/0:1,0:0.70:2.29	0/0:0,0:0.00:2.29	0/0:1,0:0.69:2.29	0/0:0,0:0.00:2.29	0/0:0,0:0.00:2.29	0/0:0,0:0.00:2.29	0/0:0,0:0.00:2.29	1/1:0,1:0.70:2.29	0/0:1,0:0.69:2.29	0/0:0,0:0.00:2.29	0/0:0,0:0.00:2.29	0/0:0,0:0.00:2.29	0/1:1,1:3.90:2.29	0/0:1,0:0.70:2.29	0/0:0,0:0.00:2.29	0/0:0,0:0.00:2.29	1/1:0,2:1.38:2.29	0/1:1,2:3.11:2.29	0/0:0,0:0.00:2.29	1/1:0,1:0.70:2.29	1/1:0,2:1.38:2.29	0/0:0,0:0.00:2.29	0/0:0,0:0.00:2.29	0/0:0,0:0.00:2.29	0/0:0,0:0.00:2.29	0/0:0,0:0.00:2.29	0/0:0,0:0.00:2.29	0/0:0,0:0.00:2.29	0/0:1,0:0.69:2.29	1/1:0,1:0.69:2.29	0/0:2,0:1.39:2.29	0/0:0,0:0.00:2.29	0/0:1,0:0.69:2.29	0/0:0,0:0.00:2.29	1/1:0,1:0.70:2.29	0/0:0,0:0.00:2.29	0/0:1,0:0.69:2.29	0/0:0,0:0.00:2.29	0/0:0,0:0.00:2.29	1/1:0,3:2.08:2.29	0/0:0,0:0.00:2.29	0/0:0,0:0.00:2.29
1	564674	var_2661728	A	G	.	PF_FAIL_REPEAT;MISMAPPED_UNPLACEABLE	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	0/0:1,0:0.70:5.94	0/0:0,0:0.00:5.94	0/0:0,0:0.00:5.94	0/0:0,0:0.00:5.94	0/0:0,0:0.00:5.94	0/0:0,0:0.00:5.94	0/1:1,1:3.87:5.94	0/0:1,0:0.70:5.94	0/0:0,0:0.00:5.94	0/1:1,1:3.61:5.94	0/0:0,0:0.00:5.94	0/0:1,0:0.69:5.94	0/0:0,0:0.00:5.94	0/0:1,0:0.69:5.94	0/0:0,0:0.00:5.94	0/0:0,0:0.00:5.94	0/0:0,0:0.00:5.94	0/0:0,0:0.00:5.94	0/0:2,0:1.39:5.94	0/0:0,0:0.00:5.94	0/0:1,0:0.69:5.94	1/1:0,2:1.39:5.94	0/0:0,0:0.00:5.94	0/0:0,0:0.00:5.94	0/0:0,0:0.00:5.94	0/0:1,0:0.69:5.94	0/0:0,0:0.00:5.94	0/1:1,1:4.01:5.94	1/1:0,1:0.69:5.94	0/0:0,0:0.00:5.94	0/0:0,0:0.00:5.94	0/1:1,3:3.35:5.94	0/0:0,0:0.00:5.94	0/0:0,0:0.00:5.94	0/1:2,2:8.86:5.94	0/0:0,0:0.00:5.94	1/1:0,1:0.70:5.94	0/0:0,0:0.00:5.94	0/0:0,0:0.00:5.94	0/0:0,0:0.00:5.94	0/0:0,0:0.00:5.94	0/1:1,1:3.33:5.94	0/0:1,0:0.69:5.94	0/0:0,0:0.00:5.94	0/0:1,0:0.69:5.94	0/0:1,0:0.69:5.94	0/0:0,0:0.00:5.94	0/0:0,0:0.00:5.94	1/1:0,1:0.69:5.94	0/0:0,0:0.00:5.94	0/0:1,0:0.70:5.94	0/0:1,0:0.70:5.94	0/0:0,0:0.00:5.94	0/0:0,0:0.00:5.94	0/0:0,0:0.00:5.94	0/0:1,0:0.70:5.94	0/0:0,0:0.00:5.94	0/0:0,0:0.00:5.94	0/0:0,0:0.00:5.94	0/0:1,0:0.69:5.94	0/1:1,1:4.15:5.94	0/0:0,0:0.00:5.94	0/0:0,0:0.00:5.94	0/0:1,0:0.69:5.94	0/0:1,0:0.69:5.94	0/0:0,0:0.00:5.94	0/1:1,1:3.82:5.94	0/0:0,0:0.00:5.94	0/1:1,2:3.00:5.94	0/0:0,0:0.00:5.94	0/0:0,0:0.00:5.94	0/0:0,0:0.00:5.94	0/0:0,0:0.00:5.94	0/0:1,0:0.69:5.94	0/0:0,0:0.00:5.94	0/1:1,1:3.95:5.94	0/0:0,0:0.00:5.94	0/0:0,0:0.00:5.94
1	564675	var_1130202	C	A	.	PF_FAIL_REPEAT;MISMAPPED_UNPLACEABLE	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	0/0:0,0:0.00:5.11	0/0:0,0:0.00:5.11	1/1:0,1:0.69:5.11	0/0:0,0:0.00:5.11	0/0:0,0:0.00:5.11	0/0:0,0:0.00:5.11	1/1:0,1:0.70:5.11	0/0:0,0:0.00:5.11	0/0:0,0:0.00:5.11	0/0:0,0:0.00:5.11	0/0:0,0:0.00:5.11	0/1:1,1:3.33:5.11	0/0:0,0:0.00:5.11	0/0:0,0:0.00:5.11	1/1:0,1:0.69:5.11	0/0:0,0:0.00:5.11	0/0:0,0:0.00:5.11	0/0:0,0:0.00:5.11	0/0:0,0:0.00:5.11	1/1:0,1:0.70:5.11	0/0:0,0:0.00:5.11	0/0:0,0:0.00:5.11	0/0:0,0:0.00:5.11	0/0:0,0:0.00:5.11	0/1:1,1:4.30:5.11	0/0:0,0:0.00:5.11	0/0:0,0:0.00:5.11	0/0:0,0:0.00:5.11	0/0:0,0:0.00:5.11	0/0:0,0:0.00:5.11	0/0:0,0:0.00:5.11	0/1:6,6:21.85:5.11	0/0:0,0:0.00:5.11	0/0:1,0:0.69:5.11	0/1:2,1:4.08:5.11	0/0:0,0:0.00:5.11	0/0:0,0:0.00:5.11	0/0:0,0:0.00:5.11	1/1:0,1:0.69:5.11	0/0:0,0:0.00:5.11	0/0:0,0:0.00:5.11	0/1:1,1:3.33:5.11	0/0:0,0:0.00:5.11	0/0:0,0:0.00:5.11	0/0:0,0:0.00:5.11	0/1:1,1:3.79:5.11	0/0:0,0:0.00:5.11	0/0:0,0:0.00:5.11	1/1:0,1:0.69:5.11	0/0:0,0:0.00:5.11	0/1:1,1:3.81:5.11	0/0:0,0:0.00:5.11	1/1:0,1:0.70:5.11	0/0:0,0:0.00:5.11	0/0:0,0:0.00:5.11	0/0:0,0:0.00:5.11	0/0:0,0:0.00:5.11	0/0:0,0:0.00:5.11	0/0:0,0:0.00:5.11	1/1:0,1:0.69:5.11	1/1:0,1:0.70:5.11	0/0:0,0:0.00:5.11	0/0:0,0:0.00:5.11	0/0:0,0:0.00:5.11	0/0:0,0:0.00:5.11	1/1:0,1:0.69:5.11	0/0:0,0:0.00:5.11	0/0:0,0:0.00:5.11	0/0:0,0:0.00:5.11	0/0:0,0:0.00:5.11	0/0:0,0:0.00:5.11	0/0:0,0:0.00:5.11	0/0:0,0:0.00:5.11	0/0:1,0:0.69:5.11	0/0:0,0:0.00:5.11	0/0:0,0:0.00:5.11	0/0:0,0:0.00:5.11	0/0:0,0:0.00:5.11
1	564678	var_4936139	T	G	.	PF_FAIL_REPEAT;MISMAPPED_UNPLACEABLE	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	0/0:0,0:0.00:1.62	0/0:0,0:0.00:1.62	1/1:0,1:0.69:1.62	0/0:0,0:0.00:1.62	0/0:0,0:0.00:1.62	1/1:0,1:0.69:1.62	1/1:0,1:0.70:1.62	0/0:1,0:0.70:1.62	1/1:0,2:1.38:1.62	0/1:1,2:2.92:1.62	1/1:0,1:0.69:1.62	0/0:0,0:0.00:1.62	0/0:0,0:0.00:1.62	1/1:0,2:1.39:1.62	0/0:0,0:0.00:1.62	0/0:0,0:0.00:1.62	1/1:0,1:0.69:1.62	0/0:0,0:0.00:1.62	0/0:1,0:0.69:1.62	0/0:0,0:0.00:1.62	0/0:0,0:0.00:1.62	0/0:0,0:0.00:1.62	0/0:0,0:0.00:1.62	1/1:0,1:0.69:1.62	0/0:1,0:0.69:1.62	0/0:1,0:0.69:1.62	0/0:0,0:0.00:1.62	0/0:0,0:0.00:1.62	0/0:0,0:0.00:1.62	0/0:1,0:0.69:1.62	0/0:0,0:0.00:1.62	0/1:5,8:16.82:1.62	0/0:1,0:0.70:1.62	0/0:3,0:2.08:1.62	0/1:3,6:10.47:1.62	0/0:0,0:0.00:1.62	0/0:1,0:0.70:1.62	0/0:0,0:0.00:1.62	1/1:0,1:0.69:1.62	0/0:0,0:0.00:1.62	0/0:0,0:0.00:1.62	1/1:0,1:0.69:1.62	0/0:0,0:0.00:1.62	0/0:0,0:0.00:1.62	0/0:0,0:0.00:1.62	1/1:0,1:0.69:1.62	0/0:0,0:0.00:1.62	0/0:0,0:0.00:1.62	0/0:0,0:0.00:1.62	0/0:0,0:0.00:1.62	0/0:0,0:0.00:1.62	1/1:0,1:0.70:1.62	0/0:1,0:0.70:1.62	1/1:0,1:0.69:1.62	0/0:0,0:0.00:1.62	0/0:0,0:0.00:1.62	0/0:0,0:0.00:1.62	0/0:1,0:0.69:1.62	0/0:0,0:0.00:1.62	0/0:0,0:0.00:1.62	0/0:0,0:0.00:1.62	1/1:0,1:0.69:1.62	0/0:0,0:0.00:1.62	0/0:0,0:0.00:1.62	0/0:0,0:0.00:1.62	0/0:0,0:0.00:1.62	1/1:0,3:2.08:1.62	0/0:1,0:0.70:1.62	1/1:0,1:0.69:1.62	1/1:0,1:0.69:1.62	0/0:0,0:0.00:1.62	0/0:0,0:0.00:1.62	0/0:1,0:0.69:1.62	0/0:0,0:0.00:1.62	0/0:0,0:0.00:1.62	0/0:1,0:0.70:1.62	0/0:0,0:0.00:1.62	0/0:0,0:0.00:1.62
1	564680	var_159625	C	G	.	PF_FAIL_REPEAT	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	1/1:1096,1:701.29:182.42	1/1:1066,0:726.56:182.42	0/0:3,0:2.08:182.42	1/1:706,0:552.68:182.42	1/1:1930,1:2282.86:182.42	1/1:1372,0:1445.89:182.42	1/1:1324,0:1242.99:182.42	1/1:1283,0:993.34:182.42	1/1:1389,0:1635.09:182.42	1/1:1580,0:2159.28:182.42	1/1:1542,0:1671.11:182.42	1/1:835,1:848.82:182.42	0/0:646,0:27.80:182.42	1/1:911,0:979.32:182.42	1/1:1331,0:1075.90:182.42	0/0:553,0:55.60:182.42	1/1:1415,0:994.24:182.42	1/1:510,0:226.47:182.42	1/1:971,0:629.57:182.42	1/1:1670,0:1648.82:182.42	1/1:996,0:614.29:182.42	1/1:1366,0:1472.29:182.42	1/1:2062,0:2082.51:182.42	1/1:1458,1:1138.93:182.42	1/1:4895,0:8835.09:182.42	1/1:948,0:947.66:182.42	1/1:794,0:471.80:182.42	1/1:1133,0:723.03:182.42	1/1:1461,0:1539.34:182.42	0/0:2,0:1.38:182.42	1/1:1201,1:624.74:182.42	1/1:5278,4:7659.87:182.42	1/1:1366,1:1103.78:182.42	1/1:1820,0:2201.85:182.42	1/1:2413,2:1524.47:182.42	1/1:1726,0:1880.63:182.42	1/1:764,0:537.73:182.42	1/1:661,0:350.51:182.42	1/1:2871,0:3955.36:182.42	1/1:739,0:580.13:182.42	1/1:1494,0:1244.43:182.42	1/1:753,1:687.59:182.42	1/1:1308,0:889.84:182.42	1/1:321,0:355.28:182.42	1/1:1567,0:1658.16:182.42	1/1:1203,0:1108.22:182.42	1/1:1064,0:941.35:182.42	1/1:1119,1:1243.91:182.42	1/1:1679,2:1927.78:182.42	1/1:1569,0:1327.50:182.42	1/1:1211,0:1097.73:182.42	1/1:1172,1:962.65:182.42	1/1:1156,0:906.18:182.42	1/1:862,0:493.26:182.42	1/1:1196,0:812.09:182.42	1/1:1383,0:925.91:182.42	1/1:1410,0:1011.74:182.42	1/1:1345,0:1064.89:182.42	1/1:691,1:452.90:182.42	1/1:834,0:334.10:182.42	1/1:1597,1:1354.20:182.42	1/1:478,0:169.43:182.42	1/1:679,0:460.98:182.42	1/1:1323,0:1266.63:182.42	1/1:1104,0:880.13:182.42	1/1:1630,0:1230.73:182.42	1/1:1220,0:1101.24:182.42	1/1:1636,0:1497.56:182.42	1/1:1885,0:2747.99:182.42	1/1:995,0:925.21:182.42	1/1:958,1:566.31:182.42	1/1:732,1:497.06:182.42	1/1:1038,0:820.43:182.42	1/1:1287,0:903.04:182.42	1/1:634,0:270.03:182.42	1/1:1942,1:2411.34:182.42	1/1:1325,0:1355.59:182.42	1/1:882,0:690.02:182.42
1	564680	var_5477343	C	G	.	PF_FAIL_REPEAT	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	1/1:1041,1:612.98:184.03	1/1:1035,0:675.00:184.03	1/1:2402,2:2992.58:184.03	1/1:728,0:592.12:184.03	1/1:1820,0:2041.10:184.03	1/1:1386,0:1474.67:184.03	1/1:1440,0:1472.48:184.03	1/1:1206,0:859.33:184.03	1/1:1417,0:1696.25:184.03	1/1:1667,0:2372.30:184.03	1/1:1597,0:1786.55:184.03	1/1:753,2:692.49:184.03	0/0:630,0:42.82:184.03	1/1:946,1:1057.21:184.03	1/1:1181,0:813.89:184.03	0/0:529,0:76.50:184.03	1/1:1322,0:839.28:184.03	1/1:496,0:206.54:184.03	1/1:983,0:649.37:184.03	1/1:1623,0:1556.20:184.03	1/1:977,0:583.83:184.03	1/1:1335,0:1408.32:184.03	1/1:2110,0:2173.28:184.03	1/1:1327,0:907.03:184.03	1/1:4494,0:7727.59:184.03	1/1:945,0:941.67:184.03	1/1:802,0:484.56:184.03	1/1:1167,0:779.12:184.03	1/1:1452,0:1520.90:184.03	1/1:1125,0:829.95:184.03	1/1:1090,0:456.59:184.03	1/1:5420,10:8033.97:184.03	1/1:1448,1:1253.89:184.03	1/1:1899,0:2377.93:184.03	1/1:2286,2:1321.47:184.03	1/1:1816,0:2070.79:184.03	1/1:786,0:575.42:184.03	1/1:716,0:436.60:184.03	1/1:2619,1:3373.55:184.03	1/1:714,0:536.06:184.03	1/1:1505,1:1270.09:184.03	1/1:710,3:614.72:184.03	1/1:1240,0:777.58:184.03	1/1:303,0:318.06:184.03	1/1:1597,0:1720.12:184.03	1/1:1221,0:1142.88:184.03	1/1:1063,0:939.46:184.03	1/1:1161,0:1328.12:184.03	1/1:1683,1:1931.75:184.03	1/1:1598,1:1386.74:184.03	1/1:1266,0:1203.64:184.03	1/1:1211,1:1034.02:184.03	1/1:1117,0:837.41:184.03	1/1:909,0:568.21:184.03	1/1:1214,1:847.80:184.03	1/1:1339,0:853.28:184.03	1/1:1336,0:886.83:184.03	1/1:1214,0:837.15:184.03	1/1:705,1:476.04:184.03	1/1:722,0:185.61:184.03	1/1:1679,1:1507.31:184.03	1/1:472,0:161.39:184.03	1/1:650,0:413.08:184.03	1/1:1213,0:1056.35:184.03	1/1:1181,0:1020.88:184.03	1/1:1539,0:1073.84:184.03	1/1:1251,0:1160.51:184.03	1/1:1708,0:1636.84:184.03	1/1:1967,0:2951.10:184.03	1/1:993,0:921.37:184.03	1/1:989,0:610.56:184.03	1/1:746,0:512.21:184.03	1/1:1041,1:830.96:184.03	1/1:1157,1:694.48:184.03	1/1:639,0:277.15:184.03	1/1:1996,0:2527.55:184.03	1/1:1404,0:1517.49:184.03	1/1:907,0:734.82:184.03
1	564683	var_3273677	T	A	.	PF_FAIL_REPEAT;MISMAPPED_UNPLACEABLE	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	1/1:0,1:0.70:7.11	0/0:0,0:0.00:7.11	0/0:0,0:0.00:7.11	0/0:0,0:0.00:7.11	0/1:1,1:4.00:7.11	1/1:0,1:0.69:7.11	1/1:0,1:0.70:7.11	0/1:1,1:4.00:7.11	0/0:1,0:0.70:7.11	0/0:0,0:0.00:7.11	0/0:1,0:0.69:7.11	0/1:1,2:2.64:7.11	0/0:0,0:0.00:7.11	0/1:1,1:3.36:7.11	0/0:0,0:0.00:7.11	0/0:0,0:0.00:7.11	0/0:0,0:0.00:7.11	0/0:0,0:0.00:7.11	0/0:0,0:0.00:7.11	0/0:1,0:0.70:7.11	0/0:0,0:0.00:7.11	0/0:0,0:0.00:7.11	0/0:0,0:0.00:7.11	0/0:0,0:0.00:7.11	0/1:1,1:4.30:7.11	0/0:0,0:0.00:7.11	0/0:0,0:0.00:7.11	0/0:0,0:0.00:7.11	0/0:0,0:0.00:7.11	0/0:1,0:0.69:7.11	0/0:1,0:0.70:7.11	0/1:5,6:18.22:7.11	0/0:1,0:0.70:7.11	0/1:2,1:3.22:7.11	0/1:5,1:2.00:7.11	0/0:1,0:0.69:7.11	1/1:0,1:0.70:7.11	0/0:0,0:0.00:7.11	1/1:0,1:0.69:7.11	0/0:0,0:0.00:7.11	0/0:0,0:0.00:7.11	0/1:2,1:2.65:7.11	0/0:0,0:0.00:7.11	0/0:0,0:0.00:7.11	0/0:0,0:0.00:7.11	1/1:0,3:2.08:7.11	0/0:0,0:0.00:7.11	0/0:0,0:0.00:7.11	0/0:0,0:0.00:7.11	0/0:0,0:0.00:7.11	0/0:1,0:0.70:7.11	0/0:0,0:0.00:7.11	0/0:0,0:0.00:7.11	1/1:0,1:0.69:7.11	0/0:0,0:0.00:7.11	0/0:0,0:0.00:7.11	1/1:0,1:0.69:7.11	0/0:0,0:0.00:7.11	0/0:0,0:0.00:7.11	0/0:0,0:0.00:7.11	0/0:0,0:0.00:7.11	0/0:0,0:0.00:7.11	0/0:0,0:0.00:7.11	0/0:0,0:0.00:7.11	1/1:0,1:0.69:7.11	0/0:0,0:0.00:7.11	0/1:1,2:3.13:7.11	0/1:1,1:4.10:7.11	1/1:0,1:0.69:7.11	1/1:0,1:0.69:7.11	0/0:0,0:0.00:7.11	0/0:0,0:0.00:7.11	0/0:0,0:0.00:7.11	0/0:0,0:0.00:7.11	0/0:0,0:0.00:7.11	1/1:0,1:0.70:7.11	1/1:0,1:0.70:7.11	0/0:0,0:0.00:7.11
1	564686	var_5529626	A	C	.	PF_FAIL_REPEAT	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	1/1:993,0:532.89:183.84	1/1:1005,5:647.67:183.84	1/1:2261,2:2681.00:183.84	1/1:707,1:559.24:183.84	1/1:1731,1:1860.10:183.84	1/1:1309,3:1331.88:183.84	1/1:1363,2:1328.86:183.84	1/1:1155,0:773.24:183.84	1/1:1358,0:1568.04:183.84	1/1:1597,2:2213.64:183.84	1/1:1502,5:1609.91:183.84	1/1:730,0:640.32:183.84	0/0:579,0:87.94:183.84	1/1:901,1:963.42:183.84	1/1:1110,5:718.53:183.84	0/0:493,0:105.80:183.84	1/1:1224,1:688.65:183.84	1/1:479,1:187.68:183.84	1/1:946,2:598.56:183.84	1/1:1543,8:1434.59:183.84	1/1:937,3:535.00:183.84	1/1:1282,8:1331.19:183.84	1/1:2026,0:2004.63:183.84	1/1:1287,7:870.46:183.84	1/1:4323,2:7276.71:183.84	1/1:918,5:907.78:183.84	1/1:767,3:442.82:183.84	1/1:1138,1:736.62:183.84	1/1:1391,10:1434.74:183.84	1/1:1124,0:828.21:183.84	1/1:1029,0:372.00:183.84	1/1:5274,3:7645.35:183.84	1/1:1393,0:1147.26:183.84	1/1:1857,0:2283.90:183.84	1/1:2133,6:1105.10:183.84	1/1:1713,9:1889.04:183.84	1/1:762,2:543.53:183.84	1/1:707,3:435.33:183.84	1/1:2450,1:2993.08:183.84	1/1:692,4:514.13:183.84	1/1:1449,0:1162.76:183.84	1/1:665,3:533.23:183.84	1/1:1184,0:687.93:183.84	1/1:288,0:287.85:183.84	1/1:1516,6:1579.40:183.84	1/1:1167,1:1044.89:183.84	1/1:1011,3:856.47:183.84	1/1:1116,8:1261.41:183.84	1/1:1578,1:1710.17:183.84	1/1:1540,11:1317.47:183.84	1/1:1190,4:1075.56:183.84	1/1:1163,2:950.92:183.84	1/1:1058,1:741.24:183.84	1/1:866,3:513.32:183.84	1/1:1152,0:739.17:183.84	1/1:1273,2:757.51:183.84	1/1:1265,3:785.65:183.84	1/1:1146,1:729.85:183.84	1/1:656,2:400.50:183.84	1/1:682,1:141.99:183.84	1/1:1600,4:1373.15:183.84	1/1:459,3:156.90:183.84	1/1:631,2:391.40:183.84	1/1:1125,0:895.28:183.84	1/1:1132,5:951.99:183.84	1/1:1467,0:953.50:183.84	1/1:1180,2:1035.64:183.84	1/1:1651,8:1559.61:183.84	1/1:1919,1:2836.86:183.84	1/1:946,2:841.33:183.84	1/1:949,0:546.84:183.84	1/1:714,0:459.10:183.84	1/1:1000,0:753.25:183.84	1/1:1091,2:596.09:183.84	1/1:606,1:235.92:183.84	1/1:1982,1:2501.23:183.84	1/1:1330,1:1370.88:183.84	1/1:880,0:686.47:183.84
1	564689	var_1929824	C	A	.	PF_FAIL_REPEAT	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	1/1:1121,2:747.04:185.54	1/1:1090,0:767.09:185.54	1/1:2452,1:3100.23:185.54	1/1:736,0:606.63:185.54	1/1:1903,0:2218.86:185.54	1/1:1427,2:1569.43:185.54	1/1:1390,0:1372.37:185.54	1/1:1278,0:984.50:185.54	1/1:1414,0:1689.67:185.54	1/1:1691,3:2443.77:185.54	1/1:1616,1:1832.12:185.54	1/1:801,0:776.59:185.54	0/0:640,0:33.48:185.54	1/1:962,3:1098.78:185.54	1/1:1364,0:1135.89:185.54	0/0:564,0:45.66:185.54	1/1:1395,0:960.38:185.54	1/1:513,0:230.79:185.54	1/1:992,0:664.32:185.54	1/1:1694,0:1696.63:185.54	1/1:1016,1:652.04:185.54	1/1:1371,1:1487.82:185.54	1/1:2114,1:2187.02:185.54	1/1:1524,0:1252.02:185.54	1/1:4886,1:8815.55:185.54	1/1:987,0:1026.28:185.54	1/1:826,0:523.30:185.54	1/1:1156,1:766.27:185.54	1/1:1500,0:1619.83:185.54	0/0:1,0:0.69:185.54	1/1:1180,1:593.16:185.54	1/1:5342,2:7807.07:185.54	1/1:1428,0:1211.42:185.54	1/1:1913,1:2414.78:185.54	1/1:2441,3:1575.20:185.54	1/1:1961,1:2391.80:185.54	1/1:795,0:591.02:185.54	1/1:695,0:403.21:185.54	1/1:2822,0:3839.34:185.54	1/1:739,0:580.13:185.54	1/1:1535,4:1338.77:185.54	1/1:731,3:653.73:185.54	1/1:1309,1:897.01:185.54	1/1:310,0:332.40:185.54	1/1:1634,1:1802.60:185.54	1/1:1254,2:1216.76:185.54	1/1:1093,0:996.29:185.54	1/1:1157,1:1324.48:185.54	1/1:1693,2:1957.80:185.54	1/1:1650,2:1489.21:185.54	1/1:1277,0:1225.11:185.54	1/1:1245,0:1092.01:185.54	1/1:1179,0:947.35:185.54	1/1:916,0:579.59:185.54	1/1:1200,1:824.21:185.54	1/1:1398,0:950.99:185.54	1/1:1433,1:1056.90:185.54	1/1:1339,0:1054.17:185.54	1/1:739,0:528.49:185.54	1/1:831,1:335.24:185.54	1/1:1654,2:1465.03:185.54	1/1:489,0:184.38:185.54	1/1:672,0:449.30:185.54	1/1:1307,0:1235.46:185.54	1/1:1142,0:948.94:185.54	1/1:1589,0:1159.39:185.54	1/1:1293,0:1242.04:185.54	1/1:1703,0:1627.07:185.54	1/1:1944,2:2903.26:185.54	1/1:1040,0:1012.88:185.54	1/1:960,0:564.20:185.54	1/1:742,0:505.49:185.54	1/1:1093,1:925.29:185.54	1/1:1268,1:876.37:185.54	1/1:641,0:280.01:185.54	1/1:1953,2:2440.62:185.54	1/1:1387,2:1491.92:185.54	1/1:906,0:733.01:185.54
1	564690	var_812431	T	G	.	PF_FAIL_REPEAT;MISMAPPED_UNPLACEABLE	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	0/0:0,0:0.00:1.00	0/0:0,0:0.00:1.00	0/0:0,0:0.00:1.00	0/0:0,0:0.00:1.00	1/1:0,1:0.70:1.00	0/0:0,0:0.00:1.00	0/0:0,0:0.00:1.00	0/0:1,0:0.70:1.00	0/0:0,0:0.00:1.00	0/0:0,0:0.00:1.00	0/0:2,0:1.38:1.00	1/1:0,2:1.39:1.00	0/0:0,0:0.00:1.00	0/0:0,0:0.00:1.00	0/0:0,0:0.00:1.00	0/0:0,0:0.00:1.00	0/0:1,0:0.69:1.00	0/0:0,0:0.00:1.00	0/0:0,0:0.00:1.00	0/0:0,0:0.00:1.00	0/0:0,0:0.00:1.00	0/0:1,0:0.69:1.00	0/0:0,0:0.00:1.00	0/0:0,0:0.00:1.00	0/0:1,0:0.69:1.00	0/0:0,0:0.00:1.00	0/0:0,0:0.00:1.00	1/1:0,1:0.69:1.00	0/0:0,0:0.00:1.00	0/0:1,0:0.69:1.00	0/0:1,0:0.70:1.00	0/1:3,8:8.96:1.00	0/0:0,0:0.00:1.00	0/0:1,0:0.69:1.00	0/1:2,2:8.86:1.00	0/0:0,0:0.00:1.00	0/0:0,0:0.00:1.00	0/0:0,0:0.00:1.00	0/0:0,0:0.00:1.00	0/0:0,0:0.00:1.00	0/0:3,0:2.08:1.00	1/1:0,2:1.39:1.00	1/1:0,1:0.69:1.00	0/0:0,0:0.00:1.00	0/0:0,0:0.00:1.00	1/1:0,1:0.69:1.00	0/0:0,0:0.00:1.00	0/0:0,0:0.00:1.00	0/0:0,0:0.00:1.00	0/0:0,0:0.00:1.00	0/0:0,0:0.00:1.00	0/0:0,0:0.00:1.00	0/0:0,0:0.00:1.00	0/0:0,0:0.00:1.00	0/0:0,0:0.00:1.00	0/1:1,1:4.18:1.00	0/0:0,0:0.00:1.00	0/0:0,0:0.00:1.00	0/0:0,0:0.00:1.00	0/0:0,0:0.00:1.00	0/0:2,0:1.38:1.00	0/0:0,0:0.00:1.00	0/0:0,0:0.00:1.00	0/0:0,0:0.00:1.00	0/0:0,0:0.00:1.00	0/0:0,0:0.00:1.00	0/0:0,0:0.00:1.00	0/0:0,0:0.00:1.00	0/0:0,0:0.00:1.00	0/0:0,0:0.00:1.00	0/0:0,0:0.00:1.00	0/0:0,0:0.00:1.00	0/0:0,0:0.00:1.00	0/0:0,0:0.00:1.00	0/0:0,0:0.00:1.00	0/1:4,2:5.81:1.00	0/0:0,0:0.00:1.00	0/0:0,0:0.00:1.00
1	564691	var_539318	C	A	.	PF_FAIL_REPEAT	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	1/1:1117,0:730.39:185.08	1/1:1080,0:750.13:185.08	1/1:2460,0:3112.78:185.08	1/1:728,0:592.12:185.08	1/1:1892,1:2200.47:185.08	1/1:1448,0:1603.82:185.08	1/1:1405,0:1402.21:185.08	1/1:1270,0:970.39:185.08	1/1:1420,0:1702.84:185.08	1/1:1704,1:2467.27:185.08	1/1:1613,2:1830.31:185.08	1/1:802,3:790.92:185.08	0/0:638,0:35.37:185.08	1/1:969,1:1105.98:185.08	1/1:1348,1:1112.09:185.08	0/0:563,0:46.58:185.08	1/1:1377,0:930.16:185.08	1/1:509,0:225.04:185.08	1/1:988,0:657.68:185.08	1/1:1690,0:1688.64:185.08	1/1:1011,1:643.89:185.08	1/1:1353,0:1445.38:185.08	1/1:2125,0:2203.76:185.08	1/1:1513,1:1237.57:185.08	1/1:4844,0:8692.35:185.08	1/1:975,1:1006.78:185.08	1/1:824,0:520.05:185.08	1/1:1162,1:776.20:185.08	1/1:1498,0:1615.68:185.08	0/0:1,0:0.69:185.08	1/1:1166,0:566.74:185.08	1/1:5350,5:7841.02:185.08	1/1:1426,0:1207.73:185.08	1/1:1921,0:2427.56:185.08	1/1:2420,3:1540.92:185.08	1/1:1958,0:2379.80:185.08	1/1:792,1:590.75:185.08	1/1:697,0:406.37:185.08	1/1:2763,1:3706.38:185.08	1/1:735,0:573.02:185.08	1/1:1528,1:1312.53:185.08	1/1:713,0:607.87:185.08	1/1:1297,0:871.44:185.08	1/1:308,0:328.29:185.08	1/1:1630,0:1788.92:185.08	1/1:1263,2:1234.42:185.08	1/1:1091,0:992.48:185.08	1/1:1147,0:1298.24:185.08	1/1:1699,1:1966.10:185.08	1/1:1659,1:1501.46:185.08	1/1:1271,0:1213.38:185.08	1/1:1242,0:1086.40:185.08	1/1:1177,2:953.62:185.08	1/1:926,2:605.61:185.08	1/1:1192,0:805.39:185.08	1/1:1388,0:934.25:185.08	1/1:1419,1:1032.74:185.08	1/1:1337,0:1050.60:185.08	1/1:733,0:518.25:185.08	1/1:836,0:336.89:185.08	1/1:1661,0:1467.81:185.08	1/1:477,0:168.09:185.08	1/1:674,0:452.63:185.08	1/1:1300,0:1221.88:185.08	1/1:1154,0:970.94:185.08	1/1:1576,0:1137.00:185.08	1/1:1316,1:1292.47:185.08	1/1:1706,0:1632.93:185.08	1/1:1955,1:2926.25:185.08	1/1:1043,0:1018.80:185.08	1/1:977,0:591.27:185.08	1/1:737,1:502.07:185.08	1/1:1092,1:923.46:185.08	1/1:1263,0:862.49:185.08	1/1:642,0:281.44:185.08	1/1:1966,1:2465.18:185.08	1/1:1400,0:1509.18:185.08	1/1:908,0:736.62:185.08
1	564696	var_4850935	C	G	.	PF_FAIL_REPEAT	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	1/1:1018,0:571.52:184.14	1/1:1067,0:728.23:184.14	1/1:2315,0:2788.92:184.14	1/1:780,0:687.96:184.14	1/1:1849,0:2102.79:184.14	1/1:1409,0:1522.26:184.14	1/1:1386,1:1363.75:184.14	1/1:1208,0:862.75:184.14	1/1:1357,1:1570.95:184.14	1/1:1636,0:2297.55:184.14	1/1:1608,1:1815.13:184.14	1/1:755,2:696.30:184.14	0/0:587,0:81.15:184.14	1/1:941,0:1041.94:184.14	1/1:1299,0:1018.52:184.14	0/0:543,0:64.43:184.14	1/1:1305,0:811.65:184.14	1/1:515,0:233.68:184.14	1/1:999,0:676.01:184.14	1/1:1672,1:1658.23:184.14	1/1:1001,0:622.37:184.14	1/1:1397,0:1536.96:184.14	1/1:2086,0:2124.75:184.14	1/1:1442,0:1105.12:184.14	1/1:4329,1:7287.80:184.14	1/1:1005,0:1063.08:184.14	1/1:804,0:487.76:184.14	1/1:1146,0:744.35:184.14	1/1:1480,0:1578.42:184.14	1/1:1167,1:908.85:184.14	1/1:1087,0:452.35:184.14	1/1:5495,7:8208.16:184.14	1/1:1430,0:1215.11:184.14	1/1:1865,1:2307.04:184.14	1/1:2285,3:1324.97:184.14	1/1:1884,0:2217.43:184.14	1/1:852,0:692.12:184.14	1/1:760,0:508.52:184.14	1/1:2436,0:2956.48:184.14	1/1:746,0:592.63:184.14	1/1:1511,0:1275.64:184.14	1/1:672,0:533.33:184.14	1/1:1205,0:721.24:184.14	1/1:312,0:336.53:184.14	1/1:1574,0:1672.57:184.14	1/1:1203,0:1108.22:184.14	1/1:1133,0:1073.33:184.14	1/1:1208,0:1429.67:184.14	1/1:1664,1:1891.16:184.14	1/1:1674,0:1524.50:184.14	1/1:1275,0:1221.20:184.14	1/1:1209,0:1025.08:184.14	1/1:1129,1:863.70:184.14	1/1:909,1:573.40:184.14	1/1:1236,0:879.78:184.14	1/1:1350,0:871.31:184.14	1/1:1276,1:794.09:184.14	1/1:1200,2:823.76:184.14	1/1:712,0:482.82:184.14	1/1:755,0:227.67:184.14	1/1:1686,0:1515.03:184.14	1/1:471,0:160.05:184.14	1/1:721,0:532.55:184.14	1/1:1225,0:1078.82:184.14	1/1:1233,0:1118.78:184.14	1/1:1512,0:1028.31:184.14	1/1:1283,1:1227.70:184.14	1/1:1772,0:1763.21:184.14	1/1:1949,1:2906.22:184.14	1/1:985,0:906.01:184.14	1/1:972,0:583.27:184.14	1/1:765,0:544.41:184.14	1/1:1018,0:784.90:184.14	1/1:1158,0:690.62:184.14	1/1:670,0:322.15:184.14	1/1:2030,0:2604.81:184.14	1/1:1404,0:1517.49:184.14	1/1:955,1:827.76:184.14
1	564698	var_2404872	G	C	.	MAPQ,PF_FAIL_REPEAT	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	1/1:1007,0:554.45:183.76	1/1:1073,0:738.32:183.76	1/1:2322,1:2809.90:183.76	1/1:771,0:671.12:183.76	1/1:1815,0:2030.51:183.76	1/1:1415,1:1539.92:183.76	1/1:1388,0:1368.40:183.76	1/1:1194,0:838.87:183.76	1/1:1360,0:1572.35:183.76	1/1:1619,0:2256.81:183.76	1/1:1596,0:1784.43:183.76	1/1:750,0:678.04:183.76	0/0:590,0:78.58:183.76	1/1:925,1:1013.17:183.76	1/1:1263,0:954.91:183.76	0/0:545,0:62.68:183.76	1/1:1294,0:793.89:183.76	1/1:504,0:217.88:183.76	1/1:990,0:661.00:183.76	1/1:1693,0:1694.63:183.76	1/1:1014,0:643.48:183.76	1/1:1375,0:1491.00:183.76	1/1:2072,0:2096.56:183.76	1/1:1411,0:1050.78:183.76	1/1:4284,1:7167.38:183.76	1/1:1001,1:1059.74:183.76	1/1:796,0:474.98:183.76	1/1:1157,0:762.52:183.76	1/1:1470,0:1557.82:183.76	1/1:1173,1:919.50:183.76	1/1:1086,1:456.52:183.76	1/1:5422,5:8018.62:183.76	1/1:1408,0:1174.64:183.76	1/1:1854,0:2277.22:183.76	1/1:2294,3:1339.12:183.76	1/1:1906,2:2275.44:183.76	1/1:854,1:700.68:183.76	1/1:761,1:515.16:183.76	1/1:2426,0:2934.38:183.76	1/1:736,1:579.63:183.76	1/1:1503,0:1260.93:183.76	1/1:679,0:545.88:183.76	1/1:1192,0:700.58:183.76	1/1:307,0:326.24:183.76	1/1:1580,0:1684.93:183.76	1/1:1196,0:1094.82:183.76	1/1:1127,0:1061.68:183.76	1/1:1204,0:1420.95:183.76	1/1:1667,0:1892.26:183.76	1/1:1664,1:1510.96:183.76	1/1:1275,0:1221.20:183.76	1/1:1215,0:1036.16:183.76	1/1:1121,0:844.39:183.76	1/1:896,0:547.23:183.76	1/1:1232,0:872.95:183.76	1/1:1327,0:833.73:183.76	1/1:1247,0:742.05:183.76	1/1:1198,0:810.28:183.76	1/1:707,0:474.47:183.76	1/1:754,1:231.71:183.76	1/1:1676,0:1496.10:183.76	1/1:461,0:146.84:183.76	1/1:724,0:537.75:183.76	1/1:1230,0:1088.22:183.76	1/1:1223,0:1099.77:183.76	1/1:1526,0:1051.85:183.76	1/1:1272,0:1201.10:183.76	1/1:1755,0:1729.41:183.76	1/1:1905,0:2797.20:183.76	1/1:983,0:902.18:183.76	1/1:969,1:583.78:183.76	1/1:759,0:534.19:183.76	1/1:1021,0:790.20:183.76	1/1:1168,0:706.59:183.76	1/1:663,0:311.87:183.76	1/1:2038,0:2623.08:183.76	1/1:1390,0:1488.47:183.76	1/1:944,1:807.39:183.76
1	564700	var_3514142	C	G	.	PF_FAIL_REPEAT;MISMAPPED_UNPLACEABLE	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	0/0:1,0:0.70:1.13	0/0:0,0:0.00:1.13	0/0:1,0:0.69:1.13	1/1:0,1:0.69:1.13	0/0:0,0:0.00:1.13	0/0:0,0:0.00:1.13	1/1:0,1:0.70:1.13	0/0:0,0:0.00:1.13	1/1:0,1:0.70:1.13	1/1:0,1:0.69:1.13	0/0:0,0:0.00:1.13	0/1:1,2:2.64:1.13	0/0:0,0:0.00:1.13	0/0:0,0:0.00:1.13	0/0:0,0:0.00:1.13	0/0:1,0:0.69:1.13	0/0:0,0:0.00:1.13	0/0:0,0:0.00:1.13	0/0:1,0:0.69:1.13	0/0:0,0:0.00:1.13	0/0:1,0:0.69:1.13	0/0:0,0:0.00:1.13	0/0:0,0:0.00:1.13	0/0:0,0:0.00:1.13	0/0:1,0:0.69:1.13	0/0:0,0:0.00:1.13	0/0:0,0:0.00:1.13	0/0:1,0:0.69:1.13	0/0:0,0:0.00:1.13	0/0:0,0:0.00:1.13	0/0:0,0:0.00:1.13	0/1:3,7:9.65:1.13	0/0:1,0:0.70:1.13	0/0:1,0:0.69:1.13	0/1:2,5:6.79:1.13	0/0:0,0:0.00:1.13	0/0:0,0:0.00:1.13	0/0:0,0:0.00:1.13	0/0:0,0:0.00:1.13	0/0:1,0:0.69:1.13	0/0:0,0:0.00:1.13	1/1:0,1:0.69:1.13	0/0:0,0:0.00:1.13	0/0:0,0:0.00:1.13	0/0:0,0:0.00:1.13	0/0:0,0:0.00:1.13	0/0:0,0:0.00:1.13	0/0:0,0:0.00:1.13	0/0:0,0:0.00:1.13	0/0:0,0:0.00:1.13	0/0:0,0:0.00:1.13	0/0:0,0:0.00:1.13	0/0:1,0:0.70:1.13	0/0:0,0:0.00:1.13	0/0:0,0:0.00:1.13	0/0:1,0:0.70:1.13	0/0:0,0:0.00:1.13	0/0:1,0:0.69:1.13	0/0:0,0:0.00:1.13	0/0:0,0:0.00:1.13	0/0:0,0:0.00:1.13	0/0:0,0:0.00:1.13	0/0:1,0:0.70:1.13	0/0:0,0:0.00:1.13	0/0:0,0:0.00:1.13	0/0:0,0:0.00:1.13	0/0:1,0:0.70:1.13	0/0:0,0:0.00:1.13	0/0:1,0:0.69:1.13	0/0:0,0:0.00:1.13	1/1:0,1:0.70:1.13	0/0:0,0:0.00:1.13	0/0:0,0:0.00:1.13	0/0:0,0:0.00:1.13	0/0:0,0:0.00:1.13	0/0:1,0:0.70:1.13	0/0:0,0:0.00:1.13	0/0:0,0:0.00:1.13
1	564701	var_5191037	T	G	.	PF_FAIL_REPEAT;MISMAPPED_UNPLACEABLE	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	0/0:0,0:0.00:3.72	0/0:0,0:0.00:3.72	1/1:0,1:0.69:3.72	0/0:0,0:0.00:3.72	1/1:0,1:0.70:3.72	0/1:1,1:3.79:3.72	1/1:0,1:0.70:3.72	0/0:0,0:0.00:3.72	0/0:0,0:0.00:3.72	1/1:0,2:1.38:3.72	0/0:0,0:0.00:3.72	0/0:0,0:0.00:3.72	0/0:0,0:0.00:3.72	1/1:0,1:0.69:3.72	0/0:0,0:0.00:3.72	0/0:0,0:0.00:3.72	0/0:1,0:0.69:3.72	0/0:0,0:0.00:3.72	0/0:0,0:0.00:3.72	1/1:0,1:0.70:3.72	0/0:0,0:0.00:3.72	0/0:0,0:0.00:3.72	0/0:0,0:0.00:3.72	1/1:0,1:0.69:3.72	0/1:1,1:4.30:3.72	1/1:0,1:0.69:3.72	0/0:0,0:0.00:3.72	0/0:1,0:0.69:3.72	1/1:0,1:0.69:3.72	0/0:0,0:0.00:3.72	0/0:0,0:0.00:3.72	0/1:8,5:16.82:3.72	0/0:0,0:0.00:3.72	1/1:0,1:0.69:3.72	0/1:3,2:8.17:3.72	0/0:0,0:0.00:3.72	0/0:0,0:0.00:3.72	0/0:0,0:0.00:3.72	0/0:0,0:0.00:3.72	1/1:0,1:0.69:3.72	0/0:0,0:0.00:3.72	0/0:0,0:0.00:3.72	0/0:0,0:0.00:3.72	0/0:1,0:0.70:3.72	1/1:0,2:1.38:3.72	0/0:0,0:0.00:3.72	1/1:0,1:0.69:3.72	0/0:0,0:0.00:3.72	0/1:1,1:3.90:3.72	0/0:0,0:0.00:3.72	0/0:0,0:0.00:3.72	0/1:1,1:3.87:3.72	1/1:0,1:0.70:3.72	0/0:1,0:0.69:3.72	0/0:0,0:0.00:3.72	0/1:1,1:4.18:3.72	0/0:1,0:0.69:3.72	0/0:0,0:0.00:3.72	0/0:0,0:0.00:3.72	1/1:0,1:0.69:3.72	1/1:0,1:0.70:3.72	1/1:0,1:0.69:3.72	0/0:0,0:0.00:3.72	0/0:0,0:0.00:3.72	1/1:0,1:0.69:3.72	0/0:0,0:0.00:3.72	0/0:0,0:0.00:3.72	1/1:0,1:0.70:3.72	1/1:0,1:0.69:3.72	0/0:0,0:0.00:3.72	0/0:1,0:0.70:3.72	0/0:0,0:0.00:3.72	0/0:1,0:0.69:3.72	0/0:0,0:0.00:3.72	0/0:0,0:0.00:3.72	0/0:0,0:0.00:3.72	0/0:0,0:0.00:3.72	0/0:0,0:0.00:3.72
1	564703	var_4480416	G	A	.	PF_FAIL_REPEAT	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	1/1:1044,0:612.35:184.93	1/1:1064,0:723.21:184.93	1/1:2409,0:2997.88:184.93	1/1:719,0:575.90:184.93	1/1:1830,0:2062.32:184.93	1/1:1401,0:1505.67:184.93	1/1:1457,1:1512.16:184.93	1/1:1233,0:905.77:184.93	1/1:1462,0:1795.70:184.93	1/1:1715,4:2505.99:184.93	1/1:1607,0:1807.74:184.93	1/1:754,1:690.36:184.93	0/0:638,0:35.37:184.93	1/1:1003,0:1174.34:184.93	1/1:1186,1:827.72:184.93	0/0:540,0:67.05:184.93	1/1:1346,0:878.66:184.93	1/1:492,0:200.92:184.93	1/1:956,1:610.25:184.93	1/1:1643,1:1600.88:184.93	1/1:986,0:598.22:184.93	1/1:1331,1:1405.26:184.93	1/1:2108,0:2169.22:184.93	1/1:1370,0:979.97:184.93	1/1:4565,0:7921.16:184.93	1/1:939,0:929.75:184.93	1/1:795,0:473.39:184.93	1/1:1171,3:800.18:184.93	1/1:1467,1:1556.89:184.93	1/1:1103,0:792.01:184.93	1/1:1107,0:480.78:184.93	1/1:5419,4:8006.68:184.93	1/1:1419,1:1200.26:184.93	1/1:1931,0:2450.19:184.93	1/1:2298,3:1345.42:184.93	1/1:1839,1:2125.47:184.93	1/1:792,0:585.81:184.93	1/1:704,0:417.44:184.93	1/1:2595,0:3313.25:184.93	1/1:723,0:551.83:184.93	1/1:1507,4:1287.02:184.93	1/1:705,3:605.51:184.93	1/1:1278,0:839.87:184.93	1/1:308,0:328.29:184.93	1/1:1613,0:1753.38:184.93	1/1:1266,2:1240.32:184.93	1/1:1085,1:986.14:184.93	1/1:1122,0:1245.30:184.93	1/1:1698,2:1968.54:184.93	1/1:1586,0:1358.94:184.93	1/1:1275,2:1230.90:184.93	1/1:1223,0:1050.97:184.93	1/1:1123,0:847.90:184.93	1/1:958,1:654.12:184.93	1/1:1197,0:813.76:184.93	1/1:1358,2:894.90:184.93	1/1:1368,0:940.36:184.93	1/1:1227,1:864.56:184.93	1/1:709,0:477.81:184.93	1/1:744,0:213.49:184.93	1/1:1664,1:1478.99:184.93	1/1:467,0:154.74:184.93	1/1:658,0:426.16:184.93	1/1:1213,1:1061.58:184.93	1/1:1179,0:1017.15:184.93	1/1:1550,4:1111.92:184.93	1/1:1281,2:1228.32:184.93	1/1:1718,0:1656.43:184.93	1/1:1998,0:3028.78:184.93	1/1:1008,2:959.60:184.93	1/1:985,0:604.12:184.93	1/1:736,0:495.47:184.93	1/1:1066,0:870.84:184.93	1/1:1169,0:708.19:184.93	1/1:639,0:277.15:184.93	1/1:1992,2:2528.46:184.93	1/1:1424,0:1559.19:184.93	1/1:910,0:740.24:184.93
1	564707	var_1130203	C	T	.	MISMAPPED_UNPLACEABLE	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	0/0:0,0:0.00:1.39	0/0:0,0:0.00:1.39	1/1:0,1:0.69:1.39	0/0:0,0:0.00:1.39	0/0:0,0:0.00:1.39	0/0:0,0:0.00:1.39	0/0:1,0:0.70:1.39	0/0:0,0:0.00:1.39	0/0:2,0:1.38:1.39	0/0:2,0:1.38:1.39	0/0:1,0:0.69:1.39	0/0:1,0:0.69:1.39	0/0:0,0:0.00:1.39	0/0:6,0:4.16:1.39	0/0:0,0:0.00:1.39	0/0:0,0:0.00:1.39	0/0:1,0:0.69:1.39	1/1:0,1:0.69:1.39	0/0:0,0:0.00:1.39	0/0:1,0:0.70:1.39	0/0:0,0:0.00:1.39	0/0:0,0:0.00:1.39	0/0:1,0:0.69:1.39	0/0:0,0:0.00:1.39	0/0:0,0:0.00:1.39	0/0:0,0:0.00:1.39	0/0:1,0:0.69:1.39	1/1:0,2:1.38:1.39	0/0:0,0:0.00:1.39	0/0:1,0:0.69:1.39	0/0:0,0:0.00:1.39	0/1:4,6:14.39:1.39	0/0:0,0:0.00:1.39	0/0:2,0:1.38:1.39	0/1:1,1:4.78:1.39	0/0:0,0:0.00:1.39	0/0:0,0:0.00:1.39	0/0:0,0:0.00:1.39	0/0:0,0:0.00:1.39	0/0:1,0:0.69:1.39	0/0:0,0:0.00:1.39	0/0:0,0:0.00:1.39	0/0:0,0:0.00:1.39	0/0:0,0:0.00:1.39	0/0:0,0:0.00:1.39	0/0:1,0:0.69:1.39	0/0:0,0:0.00:1.39	0/0:0,0:0.00:1.39	0/0:0,0:0.00:1.39	0/0:0,0:0.00:1.39	0/0:1,0:0.70:1.39	0/0:0,0:0.00:1.39	0/0:0,0:0.00:1.39	0/1:3,2:6.23:1.39	0/0:0,0:0.00:1.39	0/0:0,0:0.00:1.39	1/1:0,1:0.69:1.39	0/0:0,0:0.00:1.39	0/0:0,0:0.00:1.39	0/0:0,0:0.00:1.39	0/0:0,0:0.00:1.39	0/0:0,0:0.00:1.39	0/0:0,0:0.00:1.39	0/0:0,0:0.00:1.39	0/0:0,0:0.00:1.39	0/0:0,0:0.00:1.39	0/0:5,0:3.47:1.39	0/0:0,0:0.00:1.39	0/0:0,0:0.00:1.39	0/0:1,0:0.69:1.39	0/0:0,0:0.00:1.39	0/0:0,0:0.00:1.39	0/0:0,0:0.00:1.39	1/1:0,1:0.69:1.39	0/0:0,0:0.00:1.39	1/1:0,1:0.70:1.39	0/1:2,1:3.09:1.39	0/0:1,0:0.69:1.39
1	564709	var_538694	A	G	.	MISMAPPED_UNPLACEABLE	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	0/0:0,0:0.00:1.15	0/0:1,0:0.70:1.15	0/0:1,0:0.69:1.15	0/0:0,0:0.00:1.15	0/0:1,0:0.70:1.15	1/1:0,1:0.69:1.15	0/0:0,0:0.00:1.15	1/1:0,1:0.70:1.15	0/0:1,0:0.70:1.15	1/1:0,1:0.69:1.15	0/0:0,0:0.00:1.15	1/1:0,1:0.69:1.15	0/0:2,0:1.39:1.15	0/0:1,0:0.69:1.15	0/0:0,0:0.00:1.15	0/0:0,0:0.00:1.15	0/0:0,0:0.00:1.15	0/0:0,0:0.00:1.15	0/0:0,0:0.00:1.15	1/1:0,2:1.38:1.15	0/0:1,0:0.69:1.15	0/0:1,0:0.69:1.15	0/0:0,0:0.00:1.15	0/0:0,0:0.00:1.15	0/0:0,0:0.00:1.15	0/0:0,0:0.00:1.15	0/0:0,0:0.00:1.15	0/0:0,0:0.00:1.15	0/0:1,0:0.69:1.15	0/0:0,0:0.00:1.15	0/0:0,0:0.00:1.15	0/1:5,3:11.04:1.15	0/0:0,0:0.00:1.15	0/1:1,1:3.91:1.15	1/1:0,6:4.16:1.15	0/0:1,0:0.69:1.15	0/0:0,0:0.00:1.15	0/0:1,0:0.69:1.15	0/0:0,0:0.00:1.15	0/0:0,0:0.00:1.15	1/1:0,1:0.70:1.15	1/1:0,1:0.69:1.15	0/0:0,0:0.00:1.15	0/0:0,0:0.00:1.15	0/0:0,0:0.00:1.15	0/0:3,0:2.08:1.15	0/0:0,0:0.00:1.15	0/0:0,0:0.00:1.15	0/0:0,0:0.00:1.15	0/0:0,0:0.00:1.15	0/0:0,0:0.00:1.15	0/0:0,0:0.00:1.15	0/0:0,0:0.00:1.15	0/1:1,2:3.11:1.15	0/0:0,0:0.00:1.15	0/0:0,0:0.00:1.15	0/0:1,0:0.69:1.15	0/0:0,0:0.00:1.15	0/0:1,0:0.69:1.15	0/0:0,0:0.00:1.15	0/1:3,1:2.76:1.15	0/0:0,0:0.00:1.15	0/0:0,0:0.00:1.15	0/0:0,0:0.00:1.15	0/0:0,0:0.00:1.15	0/0:2,0:1.39:1.15	0/0:0,0:0.00:1.15	0/0:1,0:0.70:1.15	0/0:2,0:1.39:1.15	0/0:0,0:0.00:1.15	0/0:0,0:0.00:1.15	1/1:0,1:0.69:1.15	1/1:0,1:0.69:1.15	0/0:0,0:0.00:1.15	0/0:0,0:0.00:1.15	0/0:2,0:1.38:1.15	0/1:1,1:3.78:1.15	0/0:0,0:0.00:1.15
1	564714	var_972383	A	G	.	PF_FAIL_REPEAT	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	1/1:1031,0:591.85:182.68	1/1:1025,0:658.56:182.68	1/1:2326,0:2813.18:182.68	1/1:715,0:568.73:182.68	1/1:1795,0:1988.29:182.68	1/1:1339,1:1383.78:182.68	1/1:1391,2:1384.17:182.68	1/1:1183,0:820.23:182.68	1/1:1375,1:1609.79:182.68	1/1:1617,0:2252.03:182.68	1/1:1558,0:1704.50:182.68	1/1:753,1:688.46:182.68	0/0:608,0:62.81:182.68	1/1:917,1:996.52:182.68	1/1:1157,0:773.68:182.68	0/0:507,1:89.28:182.68	1/1:1287,2:793.06:182.68	1/1:491,0:199.53:182.68	1/1:978,0:641.11:182.68	1/1:1584,0:1480.38:182.68	1/1:953,0:545.88:182.68	1/1:1311,0:1359.30:182.68	1/1:2096,0:2144.94:182.68	1/1:1328,0:908.70:182.68	1/1:4443,0:7589.23:182.68	1/1:941,0:933.72:182.68	1/1:796,0:474.98:182.68	1/1:1161,0:769.15:182.68	1/1:1421,0:1457.85:182.68	1/1:1136,0:849.08:182.68	1/1:1070,0:428.47:182.68	1/1:5373,4:7893.13:182.68	1/1:1434,0:1222.50:182.68	1/1:1882,1:2345.06:182.68	1/1:2212,1:1200.95:182.68	1/1:1786,1:2012.27:182.68	1/1:781,2:575.99:182.68	1/1:717,0:438.20:182.68	1/1:2622,0:3374.82:182.68	1/1:702,0:515.21:182.68	1/1:1484,0:1226.16:182.68	1/1:684,1:559.62:182.68	1/1:1216,0:738.85:182.68	1/1:291,0:293.83:182.68	1/1:1546,0:1615.14:182.68	1/1:1169,0:1043.50:182.68	1/1:1031,0:879.79:182.68	1/1:1136,0:1274.88:182.68	1/1:1658,0:1873.10:182.68	1/1:1595,0:1375.65:182.68	1/1:1227,0:1128.29:182.68	1/1:1200,0:1008.50:182.68	1/1:1081,0:775.13:182.68	1/1:882,0:524.85:182.68	1/1:1198,0:815.44:182.68	1/1:1302,1:798.90:182.68	1/1:1285,0:803.12:182.68	1/1:1191,1:804.00:182.68	1/1:673,0:418.66:182.68	1/1:702,0:160.85:182.68	1/1:1633,0:1415.37:182.68	1/1:461,0:146.84:182.68	1/1:634,0:387.20:182.68	1/1:1172,0:980.49:182.68	1/1:1142,0:948.94:182.68	1/1:1502,0:1011.57:182.68	1/1:1196,0:1055.89:182.68	1/1:1697,0:1615.37:182.68	1/1:1923,0:2841.68:182.68	1/1:969,0:875.48:182.68	1/1:970,0:580.08:182.68	1/1:734,0:492.13:182.68	1/1:1019,0:786.66:182.68	1/1:1125,0:638.52:182.68	1/1:611,0:237.79:182.68	1/1:2007,0:2552.48:182.68	1/1:1367,0:1441.09:182.68	1/1:898,0:718.62:182.68
1	564716	var_4562817	C	G	.	MISMAPPED_UNPLACEABLE	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	0/0:1,0:0.70:41.13	0/0:5,0:3.47:41.13	0/1:1,1:4.15:41.13	0/0:1,0:0.69:41.13	0/1:1,1:4.00:41.13	0/1:4,2:5.49:41.13	0/1:1,1:3.87:41.13	0/0:1,0:0.70:41.13	0/1:2,2:6.66:41.13	0/0:0,0:0.00:41.13	0/0:6,0:4.16:41.13	1/1:0,2:1.39:41.13	1/1:1,8:0.71:41.13	0/0:0,0:0.00:41.13	0/0:0,0:0.00:41.13	0/0:0,0:0.00:41.13	0/0:2,0:1.39:41.13	0/0:0,0:0.00:41.13	0/0:2,0:1.39:41.13	0/0:2,0:1.38:41.13	1/1:0,1:0.69:41.13	0/0:2,0:1.39:41.13	0/0:0,0:0.00:41.13	0/0:0,0:0.00:41.13	0/0:2,0:1.39:41.13	0/1:3,1:2.08:41.13	1/1:1,9:1.84:41.13	0/0:0,0:0.00:41.13	0/1:2,1:3.16:41.13	0/0:0,0:0.00:41.13	0/0:0,0:0.00:41.13	0/1:3,5:11.04:41.13	0/0:1,0:0.70:41.13	1/1:0,1:0.69:41.13	0/0:3,0:2.08:41.13	0/0:6,0:4.16:41.13	0/0:2,0:1.39:41.13	0/0:1,0:0.69:41.13	1/1:4,58:23.81:41.13	0/0:2,0:1.38:41.13	1/1:0,2:1.39:41.13	0/1:3,2:5.28:41.13	1/1:0,1:0.69:41.13	0/0:0,0:0.00:41.13	0/0:3,0:2.08:41.13	0/0:0,0:0.00:41.13	0/0:3,0:2.08:41.13	0/0:4,0:2.77:41.13	0/0:5,0:3.46:41.13	0/1:7,3:7.83:41.13	0/1:4,1:1.73:41.13	0/0:5,0:3.46:41.13	0/0:0,0:0.00:41.13	0/0:3,0:2.08:41.13	0/0:0,0:0.00:41.13	0/0:0,0:0.00:41.13	0/0:0,0:0.00:41.13	0/0:0,0:0.00:41.13	0/0:0,0:0.00:41.13	0/0:0,0:0.00:41.13	1/1:0,1:0.70:41.13	0/1:1,1:3.44:41.13	0/0:3,0:2.08:41.13	0/0:0,0:0.00:41.13	0/1:2,2:6.96:41.13	0/0:0,0:0.00:41.13	0/0:5,0:3.47:41.13	0/1:2,2:7.51:41.13	1/1:0,1:0.69:41.13	0/1:4,1:1.52:41.13	0/0:0,0:0.00:41.13	0/0:2,0:1.39:41.13	0/1:3,1:2.39:41.13	0/0:0,0:0.00:41.13	0/0:1,0:0.69:41.13	0/0:1,0:0.70:41.13	0/0:0,0:0.00:41.13	0/0:0,0:0.00:41.13
1	564717	var_2182396	C	G	.	PF_FAIL_REPEAT	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	1/1:1023,0:579.32:183.76	1/1:1071,0:734.96:183.76	1/1:2339,1:2847.46:183.76	1/1:773,0:674.86:183.76	1/1:1828,0:2058.07:183.76	1/1:1396,0:1495.32:183.76	1/1:1402,0:1396.23:183.76	1/1:1194,0:838.87:183.76	1/1:1378,0:1611.22:183.76	1/1:1682,0:2408.67:183.76	1/1:1619,0:1833.25:183.76	1/1:770,0:716.29:183.76	0/0:593,0:75.98:183.76	1/1:960,0:1082.09:183.76	1/1:1280,0:984.82:183.76	0/0:517,1:81.12:183.76	1/1:1280,1:776.98:183.76	1/1:514,0:232.24:183.76	1/1:994,0:667.66:183.76	1/1:1661,0:1630.98:183.76	1/1:972,0:575.88:183.76	1/1:1377,0:1495.15:183.76	1/1:2100,0:2153.03:183.76	1/1:1470,0:1154.77:183.76	1/1:4428,0:7548.65:183.76	1/1:987,0:1026.28:183.76	1/1:803,0:486.16:183.76	1/1:1168,0:780.78:183.76	1/1:1460,0:1537.28:183.76	1/1:1178,1:928.38:183.76	1/1:1063,0:418.72:183.76	1/1:5460,7:8121.24:183.76	1/1:1425,1:1211.30:183.76	1/1:1901,0:2382.43:183.76	1/1:2242,1:1247.30:183.76	1/1:1867,0:2180.54:183.76	1/1:812,0:620.75:183.76	1/1:745,0:483.71:183.76	1/1:2504,1:3113.42:183.76	1/1:735,0:573.02:183.76	1/1:1511,0:1275.64:183.76	1/1:683,0:553.09:183.76	1/1:1218,1:747.55:183.76	1/1:303,0:318.06:183.76	1/1:1596,0:1718.04:183.76	1/1:1207,0:1115.90:183.76	1/1:1084,0:979.15:183.76	1/1:1211,0:1436.21:183.76	1/1:1645,1:1850.78:183.76	1/1:1686,0:1547.44:183.76	1/1:1273,0:1217.29:183.76	1/1:1215,0:1036.16:183.76	1/1:1103,0:813.05:183.76	1/1:904,0:560.12:183.76	1/1:1204,0:825.52:183.76	1/1:1330,0:838.60:183.76	1/1:1294,0:817.74:183.76	1/1:1197,0:808.61:183.76	1/1:677,0:425.14:183.76	1/1:724,0:188.12:183.76	1/1:1645,2:1448.17:183.76	1/1:483,0:176.20:183.76	1/1:684,1:474.22:183.76	1/1:1177,1:994.89:183.76	1/1:1212,0:1078.97:183.76	1/1:1530,0:1058.60:183.76	1/1:1265,0:1187.53:183.76	1/1:1754,0:1727.44:183.76	1/1:1966,1:2953.69:183.76	1/1:982,0:900.26:183.76	1/1:981,1:602.97:183.76	1/1:747,0:513.89:183.76	1/1:1025,0:797.29:183.76	1/1:1135,0:654.21:183.76	1/1:644,0:284.31:183.76	1/1:2033,0:2611.65:183.76	1/1:1375,0:1457.53:183.76	1/1:923,0:763.86:183.76
1	564721	var_2563194	C	G	.	PF_FAIL_REPEAT	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	1/1:1010,0:559.09:184.65	1/1:1062,1:725.15:184.65	1/1:2438,0:3063.09:184.65	1/1:811,0:746.76:184.65	1/1:1936,1:2295.94:184.65	1/1:1464,0:1637.59:184.65	1/1:1361,0:1315.12:184.65	1/1:1215,0:874.74:184.65	1/1:1279,0:1400.40:184.65	1/1:1632,0:2287.95:184.65	1/1:1613,0:1820.49:184.65	1/1:740,3:671.49:184.65	0/0:602,1:62.60:184.65	1/1:965,0:1092.72:184.65	1/1:1242,0:918.27:184.65	0/0:559,0:50.21:184.65	1/1:1391,0:953.65:184.65	1/1:511,0:227.92:184.65	1/1:999,0:676.01:184.65	1/1:1654,0:1617.14:184.65	1/1:1043,0:691.19:184.65	1/1:1368,0:1476.44:184.65	1/1:1935,0:1825.85:184.65	1/1:1398,0:1028.20:184.65	1/1:4347,2:7341.09:184.65	1/1:1086,0:1232.64:184.65	1/1:837,0:541.29:184.65	1/1:1210,1:856.86:184.65	1/1:1543,0:1709.76:184.65	1/1:1129,0:836.89:184.65	1/1:1076,0:436.87:184.65	1/1:5127,6:7301.51:184.65	1/1:1397,1:1159.96:184.65	1/1:1884,0:2344.24:184.65	1/1:2297,4:1348.62:184.65	1/1:1870,0:2187.03:184.65	1/1:927,0:830.92:184.65	1/1:796,0:569.27:184.65	1/1:2421,1:2928.94:184.65	1/1:750,0:599.80:184.65	1/1:1551,0:1349.83:184.65	1/1:696,2:585.42:184.65	1/1:1262,0:813.50:184.65	1/1:330,0:374.27:184.65	1/1:1578,0:1680.81:184.65	1/1:1249,0:1197.31:184.65	1/1:1100,0:1009.66:184.65	1/1:1317,0:1672.09:184.65	1/1:1771,1:2122.53:184.65	1/1:1811,0:1791.38:184.65	1/1:1294,0:1258.47:184.65	1/1:1182,0:975.58:184.65	1/1:1133,0:865.46:184.65	1/1:944,0:625.60:184.65	1/1:1279,0:953.99:184.65	1/1:1481,0:1092.62:184.65	1/1:1263,0:767.62:184.65	1/1:1248,0:894.96:184.65	1/1:685,0:438.17:184.65	1/1:746,0:216.06:184.65	1/1:1673,1:1495.97:184.65	1/1:500,0:199.57:184.65	1/1:782,0:640.79:184.65	1/1:1314,0:1249.07:184.65	1/1:1251,0:1153.18:184.65	1/1:1620,2:1223.82:184.65	1/1:1303,0:1261.65:184.65	1/1:1766,2:1761.54:184.65	1/1:1860,0:2686.76:184.65	1/1:1002,0:938.72:184.65	1/1:892,0:458.98:184.65	1/1:754,0:525.70:184.65	1/1:1030,0:806.18:184.65	1/1:1210,1:780.06:184.65	1/1:644,0:284.31:184.65	1/1:2040,0:2627.65:184.65	1/1:1395,0:1498.82:184.65	1/1:964,0:839.51:184.65
1	564722	var_812432	T	C	.	PF_FAIL_REPEAT	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	1/1:1016,1:573.78:184.42	1/1:1048,0:696.51:184.42	1/1:2328,2:2827.99:184.42	1/1:786,0:699.25:184.42	1/1:1846,0:2096.39:184.42	1/1:1412,0:1528.50:184.42	1/1:1401,3:1408.21:184.42	1/1:1209,0:864.46:184.42	1/1:1376,1:1611.95:184.42	1/1:1655,0:2343.29:184.42	1/1:1601,0:1795.02:184.42	1/1:755,1:692.27:184.42	0/0:592,0:76.85:184.42	1/1:938,1:1040.38:184.42	1/1:1306,0:1031.01:184.42	0/0:534,0:72.23:184.42	1/1:1284,0:777.83:184.42	1/1:518,0:238.03:184.42	1/1:996,0:670.99:184.42	1/1:1669,0:1646.84:184.42	1/1:989,0:603.03:184.42	1/1:1390,0:1522.30:184.42	1/1:2101,0:2155.05:184.42	1/1:1455,0:1128.10:184.42	1/1:4375,0:7405.68:184.42	1/1:999,0:1050.79:184.42	1/1:800,0:481.36:184.42	1/1:1159,1:771.23:184.42	1/1:1457,0:1531.14:184.42	1/1:1150,0:873.58:184.42	1/1:1065,1:427.08:184.42	1/1:5499,6:8213.93:184.42	1/1:1438,0:1229.91:184.42	1/1:1888,1:2358.51:184.42	1/1:2245,1:1251.96:184.42	1/1:1856,1:2162.11:184.42	1/1:833,0:657.99:184.42	1/1:749,0:490.30:184.42	1/1:2437,0:2958.69:184.42	1/1:740,0:581.92:184.42	1/1:1522,2:1306.21:184.42	1/1:675,3:551.08:184.42	1/1:1238,1:779.84:184.42	1/1:308,0:328.29:184.42	1/1:1568,1:1665.52:184.42	1/1:1227,1:1159.66:184.42	1/1:1102,0:1013.49:184.42	1/1:1195,0:1401.40:184.42	1/1:1648,0:1851.85:184.42	1/1:1645,0:1469.41:184.42	1/1:1261,0:1193.91:184.42	1/1:1198,1:1010.09:184.42	1/1:1115,1:839.19:184.42	1/1:928,1:604.39:184.42	1/1:1229,0:867.84:184.42	1/1:1324,0:828.85:184.42	1/1:1287,0:806.36:184.42	1/1:1198,0:810.28:184.42	1/1:705,1:476.04:184.42	1/1:742,0:210.93:184.42	1/1:1671,0:1486.66:184.42	1/1:479,0:170.78:184.42	1/1:703,0:501.57:184.42	1/1:1214,0:1058.22:184.42	1/1:1227,0:1107.37:184.42	1/1:1535,0:1067.06:184.42	1/1:1270,1:1202.43:184.42	1/1:1759,2:1747.63:184.42	1/1:1988,1:3008.75:184.42	1/1:976,0:888.80:184.42	1/1:989,0:610.56:184.42	1/1:749,0:517.26:184.42	1/1:1037,0:818.65:184.42	1/1:1150,0:677.90:184.42	1/1:656,0:301.64:184.42	1/1:2066,0:2687.24:184.42	1/1:1394,2:1506.39:184.42	1/1:951,0:815.33:184.42
1	564723	var_5214771	G	C	.	PF_FAIL_REPEAT;MISMAPPED_UNPLACEABLE	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	0/0:1,0:0.70:1.64	0/0:1,0:0.00:1.64	0/0:0,0:0.00:1.64	1/1:0,2:1.39:1.64	0/1:1,1:4.00:1.64	0/0:1,0:0.69:1.64	0/0:0,0:0.00:1.64	1/1:0,1:0.70:1.64	0/1:2,1:2.98:1.64	0/1:3,2:5.83:1.64	0/0:0,0:0.00:1.64	0/1:1,1:3.33:1.64	0/0:0,0:0.00:1.64	0/0:1,0:0.69:1.64	0/0:0,0:0.00:1.64	0/0:1,0:0.69:1.64	1/1:0,1:0.69:1.64	0/0:0,0:0.00:1.64	0/0:0,0:0.00:1.64	0/0:0,0:0.00:1.64	0/1:1,1:3.91:1.64	0/0:0,0:0.00:1.64	1/1:0,1:0.69:1.64	0/0:0,0:0.00:1.64	0/0:2,0:1.39:1.64	0/0:0,0:0.00:1.64	0/0:0,0:0.00:1.64	1/1:0,3:2.08:1.64	0/0:0,0:0.00:1.64	0/0:0,0:0.00:1.64	0/0:0,0:0.00:1.64	0/0:11,1:2.19:1.64	0/0:0,0:0.00:1.64	1/1:0,1:0.69:1.64	0/0:5,0:3.46:1.64	0/0:0,0:0.00:1.64	0/0:0,0:0.00:1.64	0/0:0,0:0.00:1.64	0/0:1,0:0.69:1.64	0/0:0,0:0.00:1.64	0/0:1,0:0.70:1.64	0/0:1,0:0.69:1.64	0/0:0,0:0.00:1.64	0/0:0,0:0.00:1.64	0/0:0,0:0.00:1.64	0/1:2,1:3.10:1.64	0/0:0,0:0.00:1.64	0/0:0,0:0.00:1.64	0/0:1,0:0.69:1.64	0/0:0,0:0.00:1.64	0/0:1,0:0.70:1.64	0/0:0,0:0.00:1.64	1/1:0,1:0.70:1.64	1/1:0,1:0.69:1.64	0/0:0,0:0.00:1.64	0/0:0,0:0.00:1.64	0/0:0,0:0.00:1.64	0/0:0,0:0.00:1.64	0/0:0,0:0.00:1.64	0/0:0,0:0.00:1.64	0/1:1,1:4.15:1.64	0/0:0,0:0.00:1.64	0/0:0,0:0.00:1.64	0/0:0,0:0.00:1.64	0/0:0,0:0.00:1.64	0/0:1,0:0.69:1.64	1/1:0,1:0.70:1.64	0/0:0,0:0.00:1.64	0/0:3,0:2.08:1.64	0/0:0,0:0.00:1.64	0/0:0,0:0.00:1.64	0/0:0,0:0.00:1.64	0/0:1,0:0.69:1.64	0/0:0,0:0.00:1.64	0/0:0,0:0.00:1.64	1/1:0,1:0.70:1.64	0/0:0,0:0.00:1.64	0/0:1,0:0.69:1.64
1	564725	var_5823728	A	C	.	PF_FAIL_REPEAT;MISMAPPED_UNPLACEABLE	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	0/0:0,0:0.00:2.51	1/1:0,1:0.70:2.51	0/0:0,0:0.00:2.51	0/0:1,0:0.69:2.51	0/0:0,0:0.00:2.51	1/1:0,1:0.69:2.51	1/1:0,1:0.70:2.51	0/0:2,0:1.39:2.51	0/0:1,0:0.70:2.51	0/0:1,0:0.69:2.51	0/0:0,0:0.00:2.51	0/0:2,0:1.39:2.51	0/0:0,0:0.00:2.51	0/0:0,0:0.00:2.51	0/0:1,0:0.69:2.51	0/0:0,0:0.00:2.51	0/0:1,0:0.69:2.51	0/0:0,0:0.00:2.51	0/0:0,0:0.00:2.51	0/0:0,0:0.00:2.51	1/1:0,1:0.69:2.51	0/0:0,0:0.00:2.51	1/1:0,1:0.69:2.51	0/0:0,0:0.00:2.51	0/0:1,0:0.69:2.51	1/1:0,1:0.69:2.51	1/1:0,1:0.69:2.51	0/0:1,0:0.69:2.51	0/0:0,0:0.00:2.51	0/0:0,0:0.00:2.51	0/0:0,0:0.00:2.51	0/1:2,3:8.09:2.51	0/0:0,0:0.00:2.51	0/0:2,0:1.38:2.51	0/1:1,3:3.39:2.51	0/0:0,0:0.00:2.51	0/0:1,0:0.70:2.51	0/0:0,0:0.00:2.51	0/0:0,0:0.00:2.51	0/0:0,0:0.00:2.51	0/0:1,0:0.70:2.51	0/0:2,0:1.39:2.51	0/0:0,0:0.00:2.51	0/0:0,0:0.00:2.51	0/0:0,0:0.00:2.51	0/0:0,0:0.00:2.51	0/0:2,0:1.38:2.51	1/1:0,1:0.70:2.51	0/0:3,0:2.08:2.51	0/1:1,1:4.13:2.51	0/0:0,0:0.00:2.51	0/0:1,0:0.70:2.51	0/0:0,0:0.00:2.51	0/0:1,0:0.69:2.51	0/0:0,0:0.00:2.51	0/0:1,0:0.70:2.51	0/0:0,0:0.00:2.51	0/0:0,0:0.00:2.51	0/0:0,0:0.00:2.51	1/1:0,1:0.69:2.51	0/0:1,0:0.70:2.51	0/0:0,0:0.00:2.51	0/0:0,0:0.00:2.51	1/1:0,1:0.69:2.51	0/0:0,0:0.00:2.51	0/1:1,1:4.26:2.51	0/0:0,0:0.00:2.51	0/0:0,0:0.00:2.51	0/1:1,1:3.70:2.51	1/1:0,1:0.69:2.51	0/0:0,0:0.00:2.51	0/0:0,0:0.00:2.51	0/0:0,0:0.00:2.51	0/0:0,0:0.00:2.51	0/0:0,0:0.00:2.51	0/1:2,1:3.25:2.51	0/0:1,0:0.70:2.51	0/0:0,0:0.00:2.51
1	564727	var_5351794	G	T	.	PF_FAIL_REPEAT;MISMAPPED_UNPLACEABLE	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	0/0:0,0:0.00:1.83	0/0:0,0:0.00:1.83	0/0:1,0:0.69:1.83	1/1:0,1:0.69:1.83	0/0:0,0:0.00:1.83	0/0:0,0:0.00:1.83	0/0:0,0:0.00:1.83	0/0:0,0:0.00:1.83	0/0:0,0:0.00:1.83	0/0:0,0:0.00:1.83	1/1:0,1:0.69:1.83	0/0:0,0:0.00:1.83	0/0:0,0:0.00:1.83	0/0:0,0:0.00:1.83	0/0:0,0:0.00:1.83	1/1:0,1:0.69:1.83	0/0:0,0:0.00:1.83	0/0:0,0:0.00:1.83	0/0:0,0:0.00:1.83	0/0:0,0:0.00:1.83	0/0:2,0:1.38:1.83	0/0:0,0:0.00:1.83	0/0:0,0:0.00:1.83	0/0:0,0:0.00:1.83	0/0:1,0:0.69:1.83	0/0:0,0:0.00:1.83	0/0:0,0:0.00:1.83	0/0:0,0:0.00:1.83	0/0:0,0:0.00:1.83	0/0:0,0:0.00:1.83	0/0:0,0:0.00:1.83	0/1:3,4:11.74:1.83	0/0:0,0:0.00:1.83	0/0:3,0:2.08:1.83	0/1:2,2:8.86:1.83	0/0:0,0:0.00:1.83	0/0:0,0:0.00:1.83	0/0:0,0:0.00:1.83	0/0:0,0:0.00:1.83	0/0:0,0:0.00:1.83	0/0:1,0:0.70:1.83	0/1:1,1:3.33:1.83	0/0:1,0:0.69:1.83	0/0:0,0:0.00:1.83	1/1:0,1:0.69:1.83	0/0:1,0:0.69:1.83	0/0:0,0:0.00:1.83	1/1:0,1:0.70:1.83	0/0:2,0:1.38:1.83	0/0:0,0:0.00:1.83	0/0:0,0:0.00:1.83	0/0:0,0:0.00:1.83	0/0:0,0:0.00:1.83	0/0:0,0:0.00:1.83	0/0:0,0:0.00:1.83	0/0:0,0:0.00:1.83	0/0:1,0:0.69:1.83	0/0:1,0:0.69:1.83	0/0:0,0:0.00:1.83	0/0:0,0:0.00:1.83	0/0:2,0:1.38:1.83	0/0:0,0:0.00:1.83	0/0:0,0:0.00:1.83	0/0:1,0:0.69:1.83	0/0:0,0:0.00:1.83	0/0:1,0:0.69:1.83	0/0:0,0:0.00:1.83	0/1:1,1:4.10:1.83	0/0:0,0:0.00:1.83	0/0:0,0:0.00:1.83	0/0:0,0:0.00:1.83	0/0:0,0:0.00:1.83	0/0:0,0:0.00:1.83	0/0:0,0:0.00:1.83	0/0:0,0:0.00:1.83	1/1:0,1:0.70:1.83	0/0:0,0:0.00:1.83	0/0:1,0:0.69:1.83
1	564729	var_3833510	T	G	.	PF_FAIL_REPEAT;MISMAPPED_UNPLACEABLE	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	0/0:0,0:0.00:4.12	0/0:1,0:0.70:4.12	1/1:0,1:0.69:4.12	0/0:0,0:0.00:4.12	0/0:0,0:0.00:4.12	0/0:0,0:0.00:4.12	0/0:0,0:0.00:4.12	0/0:1,0:0.70:4.12	0/0:0,0:0.00:4.12	0/0:0,0:0.00:4.12	0/0:1,0:0.69:4.12	1/1:0,1:0.69:4.12	0/0:0,0:0.00:4.12	1/1:0,1:0.69:4.12	0/0:0,0:0.00:4.12	0/0:0,0:0.00:4.12	0/0:0,0:0.00:4.12	0/0:0,0:0.00:4.12	0/0:0,0:0.00:4.12	0/0:0,0:0.00:4.12	0/0:0,0:0.00:4.12	0/0:0,0:0.00:4.12	0/0:0,0:0.00:4.12	0/0:0,0:0.00:4.12	0/0:0,0:0.00:4.12	0/0:0,0:0.00:4.12	0/0:0,0:0.00:4.12	0/0:0,0:0.00:4.12	1/1:0,1:0.69:4.12	0/0:1,0:0.69:4.12	0/1:1,1:4.19:4.12	0/1:5,6:18.22:4.12	0/0:0,0:0.00:4.12	0/0:0,0:0.00:4.12	0/1:2,4:7.48:4.12	0/0:0,0:0.00:4.12	0/0:0,0:0.00:4.12	0/0:0,0:0.00:4.12	0/0:0,0:0.00:4.12	0/0:0,0:0.00:4.12	0/0:1,0:0.70:4.12	1/1:0,1:0.69:4.12	0/0:0,0:0.00:4.12	0/0:0,0:0.00:4.12	0/0:0,0:0.00:4.12	0/0:0,0:0.00:4.12	0/0:1,0:0.69:4.12	0/0:1,0:0.70:4.12	0/1:1,1:3.90:4.12	0/0:1,0:0.70:4.12	0/0:1,0:0.70:4.12	0/0:0,0:0.00:4.12	0/0:1,0:0.70:4.12	1/1:0,1:0.69:4.12	0/0:0,0:0.00:4.12	0/0:0,0:0.00:4.12	0/0:0,0:0.00:4.12	0/0:0,0:0.00:4.12	0/0:1,0:0.69:4.12	0/0:0,0:0.00:4.12	0/0:1,0:0.70:4.12	0/0:0,0:0.00:4.12	0/0:1,0:0.70:4.12	0/0:0,0:0.00:4.12	0/0:0,0:0.00:4.12	0/0:0,0:0.00:4.12	1/1:0,1:0.70:4.12	0/0:1,0:0.70:4.12	0/0:0,0:0.00:4.12	0/0:0,0:0.00:4.12	0/0:0,0:0.00:4.12	0/0:0,0:0.00:4.12	0/0:0,0:0.00:4.12	0/0:0,0:0.00:4.12	0/0:0,0:0.00:4.12	0/1:3,1:2.56:4.12	1/1:0,1:0.70:4.12	0/0:0,0:0.00:4.12
1	564731	var_4006580	C	T	.	MAPQ,PF_FAIL_REPEAT;MISMAPPED_UNPLACEABLE	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	0/0:1,0:0.70:5.30	0/0:4,0:2.78:5.30	0/0:1,0:0.69:5.30	1/1:0,2:1.39:5.30	0/0:2,0:1.38:5.30	0/0:3,0:2.08:5.30	0/0:0,0:0.00:5.30	0/0:0,0:0.00:5.30	0/0:2,0:1.38:5.30	0/1:2,1:2.92:5.30	0/0:0,0:0.00:5.30	0/0:0,0:0.00:5.30	0/0:0,0:0.00:5.30	0/1:4,1:1.28:5.30	0/0:0,0:0.00:5.30	1/1:0,1:0.69:5.30	1/1:0,1:0.69:5.30	1/1:0,1:0.69:5.30	0/0:0,0:0.00:5.30	0/0:0,0:0.00:5.30	0/0:0,0:0.00:5.30	0/0:1,0:0.69:5.30	0/1:1,2:3.54:5.30	0/0:0,0:0.00:5.30	0/1:3,1:2.92:5.30	0/0:1,0:0.69:5.30	1/1:0,1:0.69:5.30	0/0:0,0:0.00:5.30	0/1:1,1:3.85:5.30	0/1:1,1:3.91:5.30	0/0:0,0:0.00:5.30	0/1:4,4:15.78:5.30	1/1:0,1:0.70:5.30	0/0:0,0:0.00:5.30	0/1:3,5:11.15:5.30	0/0:1,0:0.69:5.30	0/0:1,0:0.70:5.30	0/0:0,0:0.00:5.30	0/0:1,0:0.69:5.30	0/0:1,0:0.69:5.30	1/1:0,1:0.70:5.30	1/1:0,1:0.69:5.30	0/0:0,0:0.00:5.30	0/0:0,0:0.00:5.30	0/0:0,0:0.00:5.30	0/1:1,3:2.41:5.30	0/0:2,0:1.38:5.30	0/0:1,0:0.70:5.30	0/0:0,0:0.00:5.30	0/1:2,1:3.43:5.30	0/0:2,0:1.38:5.30	0/0:0,0:0.00:5.30	0/0:0,0:0.00:5.30	0/0:1,0:0.69:5.30	0/0:1,0:0.70:5.30	0/0:0,0:0.00:5.30	1/1:0,1:0.69:5.30	0/0:0,0:0.00:5.30	0/1:3,1:2.12:5.30	0/0:0,0:0.00:5.30	1/1:0,4:2.78:5.30	0/1:1,1:3.44:5.30	0/1:1,1:3.46:5.30	0/0:0,0:0.00:5.30	0/0:0,0:0.00:5.30	0/0:1,0:0.69:5.30	0/0:0,0:0.00:5.30	0/0:1,0:0.70:5.30	0/1:1,1:3.70:5.30	0/0:2,0:1.39:5.30	0/0:1,0:0.70:5.30	0/0:1,0:0.69:5.30	0/0:0,0:0.00:5.30	0/0:0,0:0.00:5.30	0/1:1,1:3.65:5.30	0/0:0,0:0.00:5.30	0/0:0,0:0.00:5.30	0/0:1,0:0.69:5.30
1	564733	var_5191038	C	G	.	PF_FAIL_REPEAT;MISMAPPED_UNPLACEABLE	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	0/0:0,0:0.00:4.40	0/0:0,0:0.00:4.40	1/1:0,2:1.39:4.40	0/0:0,0:0.00:4.40	0/0:0,0:0.00:4.40	1/1:0,1:0.69:4.40	1/1:0,2:1.39:4.40	0/0:0,0:0.00:4.40	0/0:0,0:0.00:4.40	0/0:1,0:0.69:4.40	1/1:0,1:0.69:4.40	1/1:0,1:0.69:4.40	0/0:0,0:0.00:4.40	1/1:0,1:0.69:4.40	0/0:0,0:0.00:4.40	0/0:1,0:0.69:4.40	0/0:1,0:0.69:4.40	0/0:0,0:0.00:4.40	0/0:0,0:0.00:4.40	0/0:0,0:0.00:4.40	0/0:0,0:0.00:4.40	0/0:0,0:0.00:4.40	0/0:0,0:0.00:4.40	0/0:0,0:0.00:4.40	0/1:1,1:4.30:4.40	0/0:0,0:0.00:4.40	1/1:0,1:0.69:4.40	0/0:0,0:0.00:4.40	0/0:0,0:0.00:4.40	0/0:0,0:0.00:4.40	0/0:1,0:0.70:4.40	0/1:1,2:4.05:4.40	0/0:0,0:0.00:4.40	0/0:1,0:0.69:4.40	0/1:1,2:4.08:4.40	1/1:0,1:0.69:4.40	0/0:0,0:0.00:4.40	1/1:0,1:0.69:4.40	0/0:0,0:0.00:4.40	0/0:0,0:0.00:4.40	0/0:0,0:0.00:4.40	0/0:0,0:0.00:4.40	0/0:0,0:0.00:4.40	0/0:0,0:0.00:4.40	0/0:1,0:0.69:4.40	0/1:2,1:3.10:4.40	0/0:0,0:0.00:4.40	0/0:0,0:0.00:4.40	0/0:1,0:0.69:4.40	0/1:1,1:4.13:4.40	0/0:2,0:1.38:4.40	0/0:0,0:0.00:4.40	0/0:0,0:0.00:4.40	0/0:0,0:0.00:4.40	0/0:1,0:0.70:4.40	0/1:1,1:4.18:4.40	0/0:0,0:0.00:4.40	0/0:0,0:0.00:4.40	0/0:1,0:0.69:4.40	0/0:1,0:0.69:4.40	0/0:1,0:0.70:4.40	0/0:1,0:0.69:4.40	0/0:0,0:0.00:4.40	0/0:0,0:0.00:4.40	0/0:0,0:0.00:4.40	0/0:0,0:0.00:4.40	0/0:0,0:0.00:4.40	0/1:1,2:3.41:4.40	0/0:1,0:0.69:4.40	0/0:0,0:0.00:4.40	1/1:0,1:0.70:4.40	0/0:0,0:0.00:4.40	0/0:0,0:0.00:4.40	0/0:0,0:0.00:4.40	0/0:0,0:0.00:4.40	0/0:1,0:0.70:4.40	0/0:1,0:0.70:4.40	0/0:0,0:0.00:4.40
1	564736	var_4609049	C	G	.	PF_FAIL_REPEAT	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	1/1:1002,0:546.72:183.95	1/1:1076,0:743.39:183.95	1/1:2333,0:2828.64:183.95	1/1:764,0:658.10:183.95	1/1:1839,0:2081.47:183.95	1/1:1409,2:1531.92:183.95	1/1:1391,0:1374.36:183.95	1/1:1203,0:854.21:183.95	1/1:1365,0:1583.12:183.95	1/1:1628,0:2278.35:183.95	1/1:1576,0:1742.25:183.95	1/1:779,1:738.39:183.95	0/0:590,0:78.58:183.95	1/1:947,1:1059.32:183.95	1/1:1199,0:844.37:183.95	0/0:566,0:43.83:183.95	1/1:1309,0:818.14:183.95	1/1:501,0:213.62:183.95	1/1:976,0:637.81:183.95	1/1:1667,1:1648.31:183.95	1/1:1022,0:656.56:183.95	1/1:1348,0:1435.06:183.95	1/1:2056,0:2064.46:183.95	1/1:1308,0:875.23:183.95	1/1:4379,1:7422.14:183.95	1/1:1022,0:1098.15:183.95	1/1:798,0:478.17:183.95	1/1:1184,0:807.53:183.95	1/1:1472,0:1561.93:183.95	1/1:1195,0:953.47:183.95	1/1:1084,0:448.12:183.95	1/1:5379,7:7920.94:183.95	1/1:1444,0:1241.04:183.95	1/1:1879,0:2333.03:183.95	1/1:2319,2:1373.55:183.95	1/1:1853,0:2150.27:183.95	1/1:889,0:759.81:183.95	1/1:741,0:477.14:183.95	1/1:2520,1:3149.29:183.95	1/1:737,0:576.58:183.95	1/1:1540,0:1329.32:183.95	1/1:718,0:617.12:183.95	1/1:1196,0:706.92:183.95	1/1:312,0:336.53:183.95	1/1:1544,1:1616.36:183.95	1/1:1238,0:1175.85:183.95	1/1:1094,0:998.19:183.95	1/1:1222,0:1460.28:183.95	1/1:1689,1:1944.61:183.95	1/1:1697,0:1568.55:183.95	1/1:1242,0:1157.12:183.95	1/1:1201,0:1010.35:183.95	1/1:1129,0:858.42:183.95	1/1:940,1:624.17:183.95	1/1:1258,0:917.56:183.95	1/1:1374,0:910.93:183.95	1/1:1262,0:766.02:183.95	1/1:1194,0:803.60:183.95	1/1:696,2:465.33:183.95	1/1:739,0:207.09:183.95	1/1:1704,0:1549.26:183.95	1/1:472,0:161.39:183.95	1/1:737,0:560.45:183.95	1/1:1266,0:1156.48:183.95	1/1:1244,0:1139.77:183.95	1/1:1584,0:1150.76:183.95	1/1:1289,0:1234.21:183.95	1/1:1741,0:1701.70:183.95	1/1:1903,0:2792.27:183.95	1/1:977,0:890.71:183.95	1/1:924,1:513.15:183.95	1/1:753,0:524.02:183.95	1/1:1066,0:870.84:183.95	1/1:1167,0:704.98:183.95	1/1:642,0:281.44:183.95	1/1:2064,1:2687.98:183.95	1/1:1427,0:1565.47:183.95	1/1:921,0:760.21:183.95
1	564737	var_5371124	A	C	.	MISMAPPED_UNPLACEABLE	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	0/0:1,0:0.70:0.85	0/0:0,0:0.00:0.85	0/0:2,0:1.39:0.85	0/0:0,0:0.00:0.85	0/0:0,0:0.00:0.85	0/0:1,0:0.69:0.85	0/1:1,1:3.87:0.85	0/0:0,0:0.00:0.85	0/0:2,0:1.38:0.85	0/0:1,0:0.69:0.85	0/0:0,0:0.00:0.85	1/1:0,1:0.69:0.85	0/0:0,0:0.00:0.85	0/0:1,0:0.69:0.85	0/0:0,0:0.00:0.85	0/0:0,0:0.00:0.85	0/0:0,0:0.00:0.85	0/0:0,0:0.00:0.85	0/0:0,0:0.00:0.85	0/0:0,0:0.00:0.85	0/0:0,0:0.00:0.85	0/0:2,0:1.39:0.85	0/0:0,0:0.00:0.85	0/0:1,0:0.69:0.85	0/0:0,0:0.00:0.85	1/1:0,5:3.46:0.85	0/0:0,0:0.00:0.85	0/0:0,0:0.00:0.85	0/0:0,0:0.00:0.85	0/0:1,0:0.69:0.85	0/0:0,0:0.00:0.85	0/1:3,3:12.43:0.85	0/0:0,0:0.00:0.85	0/1:1,1:3.91:0.85	0/1:3,1:3.39:0.85	0/0:0,0:0.00:0.85	0/0:0,0:0.00:0.85	1/1:0,1:0.69:0.85	0/0:0,0:0.00:0.85	0/0:0,0:0.00:0.85	0/0:1,0:0.70:0.85	0/0:0,0:0.00:0.85	0/0:1,0:0.69:0.85	0/0:0,0:0.00:0.85	0/0:0,0:0.00:0.85	0/0:0,0:0.00:0.85	1/1:0,1:0.69:0.85	0/0:0,0:0.00:0.85	0/0:1,0:0.69:0.85	0/0:0,0:0.00:0.85	0/0:0,0:0.00:0.85	0/0:0,0:0.00:0.85	0/1:1,1:3.89:0.85	1/1:0,1:0.69:0.85	0/0:3,0:2.08:0.85	0/0:1,0:0.70:0.85	0/0:0,0:0.00:0.85	0/0:1,0:0.69:0.85	0/0:0,0:0.00:0.85	0/0:0,0:0.00:0.85	0/0:0,0:0.00:0.85	0/0:0,0:0.00:0.85	0/0:0,0:0.00:0.85	0/0:0,0:0.00:0.85	1/1:0,1:0.69:0.85	0/0:0,0:0.00:0.85	1/1:0,1:0.70:0.85	1/1:0,1:0.70:0.85	0/1:1,3:2.31:0.85	0/0:2,0:1.39:0.85	0/0:0,0:0.00:0.85	0/0:1,0:0.69:0.85	1/1:0,1:0.69:0.85	0/1:1,1:4.07:0.85	0/0:0,0:0.00:0.85	0/0:4,0:2.78:0.85	0/0:3,0:2.08:0.85	0/0:0,0:0.00:0.85
1	564738	var_2063894	C	T	.	PF_FAIL_REPEAT;MISMAPPED_UNPLACEABLE	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	0/0:0,0:0.00:9.68	0/0:1,0:0.70:9.68	0/0:0,0:0.00:9.68	1/1:0,1:0.69:9.68	1/1:0,1:0.70:9.68	1/1:0,3:2.08:9.68	1/1:0,1:0.70:9.68	0/0:1,0:0.70:9.68	0/0:0,0:0.00:9.68	0/1:1,1:3.61:9.68	1/1:0,1:0.69:9.68	0/1:1,1:3.33:9.68	0/0:0,0:0.00:9.68	0/0:0,0:0.00:9.68	0/0:0,0:0.00:9.68	0/0:0,0:0.00:9.68	0/0:0,0:0.00:9.68	0/1:1,1:3.42:9.68	0/0:0,0:0.00:9.68	0/0:0,0:0.00:9.68	1/1:0,1:0.69:9.68	0/0:1,0:0.69:9.68	1/1:0,1:0.69:9.68	0/0:0,0:0.00:9.68	0/0:0,0:0.00:9.68	0/0:3,0:2.08:9.68	0/0:0,0:0.00:9.68	1/1:0,1:0.69:9.68	0/0:1,0:0.69:9.68	0/1:1,1:3.91:9.68	0/1:1,1:4.19:9.68	0/1:4,4:15.78:9.68	1/1:0,1:0.70:9.68	1/1:0,2:1.38:9.68	0/1:4,1:2.70:9.68	0/1:2,1:3.29:9.68	1/1:0,1:0.70:9.68	0/1:1,1:3.58:9.68	1/1:0,1:0.69:9.68	0/1:1,1:3.44:9.68	0/0:0,0:0.00:9.68	0/0:1,0:0.69:9.68	0/0:0,0:0.00:9.68	0/1:1,1:2.29:9.68	0/0:0,0:0.00:9.68	0/1:1,1:3.79:9.68	0/1:2,4:5.32:9.68	0/0:0,0:0.00:9.68	0/0:0,0:0.00:9.68	0/0:1,0:0.70:9.68	0/1:1,1:3.81:9.68	0/0:0,0:0.00:9.68	0/0:1,0:0.70:9.68	1/1:0,3:2.08:9.68	0/0:0,0:0.00:9.68	0/0:0,0:0.00:9.68	0/0:1,0:0.69:9.68	1/1:0,2:1.39:9.68	0/1:1,1:3.51:9.68	0/0:0,0:0.00:9.68	0/0:0,0:0.00:9.68	0/0:1,0:0.69:9.68	0/1:1,1:3.46:9.68	0/0:0,0:0.00:9.68	0/0:0,0:0.00:9.68	0/1:1,1:4.26:9.68	0/1:1,2:3.13:9.68	0/0:1,0:0.70:9.68	1/1:0,1:0.69:9.68	0/0:0,0:0.00:9.68	1/1:0,1:0.70:9.68	0/1:1,1:3.55:9.68	1/1:0,1:0.69:9.68	0/0:0,0:0.00:9.68	0/0:1,0:0.69:9.68	0/1:1,1:3.95:9.68	0/0:2,0:1.39:9.68	1/1:0,3:2.08:9.68
1	564738	var_5272987	G	C	.	PF_FAIL_REPEAT;MISMAPPED_UNPLACEABLE	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	1/1:0,1:0.70:6.39	0/0:1,0:0.70:6.39	0/0:0,0:0.00:6.39	1/1:0,1:0.69:6.39	0/0:0,0:0.00:6.39	0/1:1,1:3.79:6.39	0/1:5,3:8.43:6.39	1/1:0,2:1.39:6.39	0/0:0,0:0.00:6.39	0/1:1,5:0.84:6.39	1/1:0,2:1.38:6.39	0/0:0,0:0.00:6.39	0/0:0,0:0.00:6.39	0/1:1,3:1.97:6.39	0/0:0,0:0.00:6.39	0/0:0,0:0.00:6.39	1/1:0,2:1.39:6.39	1/1:0,1:0.69:6.39	0/0:0,0:0.00:6.39	0/1:1,1:4.05:6.39	0/0:0,0:0.00:6.39	0/0:0,0:0.00:6.39	0/0:1,0:0.69:6.39	0/0:0,0:0.00:6.39	0/0:1,0:0.69:6.39	1/1:0,3:2.08:6.39	0/0:0,0:0.00:6.39	1/1:0,1:0.69:6.39	0/1:1,4:1.77:6.39	0/0:2,0:1.38:6.39	1/1:0,1:0.70:6.39	0/1:6,3:10.35:6.39	0/0:0,0:0.00:6.39	0/1:1,1:3.91:6.39	0/1:5,1:2.00:6.39	0/1:1,3:2.59:6.39	1/1:0,3:2.08:6.39	0/0:0,0:0.00:6.39	0/0:0,0:0.00:6.39	0/0:1,0:0.69:6.39	0/0:1,0:0.70:6.39	0/1:1,2:2.65:6.39	0/0:1,0:0.69:6.39	0/0:0,0:0.00:6.39	0/0:0,0:0.00:6.39	1/1:0,2:1.39:6.39	0/0:0,0:0.00:6.39	1/1:0,2:1.38:6.39	0/0:0,0:0.00:6.39	0/1:1,1:4.13:6.39	1/1:0,1:0.70:6.39	1/1:0,2:1.39:6.39	1/1:0,1:0.70:6.39	1/1:0,4:2.77:6.39	0/0:0,0:0.00:6.39	0/0:0,0:0.00:6.39	0/0:0,0:0.00:6.39	0/0:0,0:0.00:6.39	0/0:0,0:0.00:6.39	0/0:0,0:0.00:6.39	0/0:1,0:0.70:6.39	0/0:0,0:0.00:6.39	1/1:0,1:0.70:6.39	1/1:0,1:0.69:6.39	0/0:1,0:0.69:6.39	0/1:1,2:3.57:6.39	0/1:4,1:1.74:6.39	0/1:2,1:3.41:6.39	0/0:0,0:0.00:6.39	0/1:1,2:2.89:6.39	1/1:0,1:0.70:6.39	0/0:0,0:0.00:6.39	0/1:2,3:6.16:6.39	0/0:0,0:0.00:6.39	0/0:0,0:0.00:6.39	0/0:0,0:0.00:6.39	0/0:0,0:0.00:6.39	0/0:0,0:0.00:6.39
1	564740	var_2477624	C	G	.	PF_FAIL_REPEAT	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	1/1:1002,0:546.72:183.43	1/1:1055,0:708.15:183.43	1/1:2321,0:2802.14:183.43	1/1:763,0:656.24:183.43	1/1:1814,0:2028.39:183.43	1/1:1405,0:1513.96:183.43	1/1:1356,0:1305.32:183.43	1/1:1192,0:835.47:183.43	1/1:1317,0:1480.44:183.43	1/1:1569,1:2143.01:183.43	1/1:1561,0:1710.77:183.43	1/1:751,0:679.93:183.43	0/0:567,0:97.92:183.43	1/1:917,0:991.77:183.43	1/1:1158,0:775.34:183.43	0/0:550,0:58.26:183.43	1/1:1308,0:816.51:183.43	1/1:492,0:200.92:183.43	1/1:993,0:665.99:183.43	1/1:1651,0:1611.22:183.43	1/1:999,0:619.14:183.43	1/1:1334,0:1406.27:183.43	1/1:1982,0:1917.67:183.43	1/1:1271,0:814.12:183.43	1/1:4334,3:7310.80:183.43	1/1:1012,0:1077.49:183.43	1/1:794,0:471.80:183.43	1/1:1180,0:800.83:183.43	1/1:1453,1:1528.19:183.43	1/1:1166,0:901.78:183.43	1/1:1063,0:418.72:183.43	1/1:5288,5:7688.86:183.43	1/1:1392,0:1145.44:183.43	1/1:1827,0:2217.31:183.43	1/1:2288,5:1339.01:183.43	1/1:1828,1:2101.85:183.43	1/1:900,0:780.23:183.43	1/1:748,0:488.64:183.43	1/1:2508,0:3116.79:183.43	1/1:722,0:550.07:183.43	1/1:1514,1:1286.65:183.43	1/1:709,3:612.87:183.43	1/1:1189,0:695.83:183.43	1/1:316,0:344.83:183.43	1/1:1547,0:1617.17:183.43	1/1:1212,0:1125.52:183.43	1/1:1083,0:977.25:183.43	1/1:1214,0:1442.77:183.43	1/1:1662,0:1881.61:183.43	1/1:1703,1:1585.60:183.43	1/1:1254,0:1180.32:183.43	1/1:1153,0:923.10:183.43	1/1:1118,0:839.15:183.43	1/1:918,0:582.84:183.43	1/1:1242,0:890.04:183.43	1/1:1372,0:907.61:183.43	1/1:1254,0:753.22:183.43	1/1:1178,1:782.40:183.43	1/1:682,0:433.28:183.43	1/1:726,1:195.97:183.43	1/1:1677,1:1503.53:183.43	1/1:482,0:174.84:183.43	1/1:733,0:553.45:183.43	1/1:1256,0:1137.41:183.43	1/1:1228,0:1109.26:183.43	1/1:1583,0:1149.04:183.43	1/1:1242,1:1148.42:183.43	1/1:1717,0:1654.48:183.43	1/1:1840,0:2638.02:183.43	1/1:969,0:875.48:183.43	1/1:890,1:461.24:183.43	1/1:759,0:534.19:183.43	1/1:1027,1:806.00:183.43	1/1:1151,0:679.48:183.43	1/1:639,1:282.18:183.43	1/1:2007,0:2552.48:183.43	1/1:1368,0:1443.15:183.43	1/1:934,0:783.98:183.43
1	564740	var_5400324	C	G	.	PF_FAIL_REPEAT	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	0/0:3,0:2.08:176.83	1/1:1090,1:772.39:176.83	1/1:2590,1:3415.97:176.83	1/1:843,0:808.71:176.83	1/1:2119,0:2698.05:176.83	1/1:1520,0:1757.13:176.83	1/1:1460,1:1518.27:176.83	1/1:1357,1:1131.89:176.83	0/0:8,0:5.54:176.83	1/1:1638,1:2307.35:176.83	1/1:1687,0:1979.48:176.83	1/1:0,0:0.00:176.83	1/1:684,0:9.45:176.83	1/1:996,0:1159.19:176.83	1/1:1382,0:1168.94:176.83	1/1:622,0:10.16:176.83	1/1:1519,0:1174.75:176.83	1/1:565,0:308.38:176.83	1/1:1120,0:885.46:176.83	1/1:1685,0:1678.66:176.83	1/1:1129,0:837.31:176.83	1/1:1427,1:1605.35:176.83	1/1:1951,0:1856.98:176.83	1/1:1655,0:1495.77:176.83	0/0:5,0:3.46:176.83	1/1:1144,0:1357.78:176.83	1/1:892,0:633.38:176.83	1/1:1285,0:981.27:176.83	1/1:1626,1:1891.93:176.83	1/1:1202,0:966.06:176.83	1/1:1215,0:640.41:176.83	1/1:4948,3:6858.37:176.83	1/1:1362,0:1091.16:176.83	1/1:1925,0:2436.61:176.83	1/1:2422,3:1544.17:176.83	1/1:1936,1:2336.59:176.83	1/1:912,0:802.66:176.83	1/1:796,1:574.24:176.83	1/1:2470,1:3037.50:176.83	1/1:775,0:645.08:176.83	1/1:1644,0:1526.25:176.83	1/1:723,3:638.79:176.83	1/1:1394,0:1036.85:176.83	1/1:356,0:430.49:176.83	0/0:60,0:41.59:176.83	1/1:1341,0:1380.52:176.83	1/1:1109,0:1026.93:176.83	1/1:1343,0:1731.27:176.83	0/0:3,0:2.08:176.83	1/1:1867,1:1909.02:176.83	1/1:1351,0:1371.97:176.83	1/1:1242,1:1091.64:176.83	1/1:1298,0:1167.39:176.83	1/1:944,0:625.60:176.83	0/0:8,0:5.55:176.83	1/1:1667,0:1426.55:176.83	0/0:4,0:2.77:176.83	0/0:4,0:2.78:176.83	1/1:718,0:492.88:176.83	1/1:913,1:453.34:176.83	1/1:1759,1:1660.54:176.83	1/1:546,0:265.65:176.83	1/1:813,0:697.65:176.83	1/1:1467,0:1555.62:176.83	0/0:1,0:0.69:176.83	1/1:1764,0:1470.92:176.83	1/1:1366,1:1392.16:176.83	1/1:1804,1:1832.75:176.83	1/1:1904,0:2794.74:176.83	1/1:1055,0:1042.54:176.83	1/1:854,1:407.68:176.83	0/0:33,0:22.87:176.83	1/1:1074,0:885.38:176.83	0/0:8,0:5.54:176.83	1/1:620,1:255.34:176.83	0/0:2,0:1.38:176.83	1/1:1401,0:1511.26:176.83	1/1:983,0:875.17:176.83
1	564751	var_1049840	G	C	.	PF_FAIL_REPEAT	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	1/1:1010,0:559.09:184.92	1/1:1062,0:719.85:184.92	1/1:2438,1:3068.63:184.92	1/1:811,0:746.76:184.92	1/1:1936,0:2290.55:184.92	1/1:1464,2:1647.24:184.92	1/1:1361,1:1320.38:184.92	1/1:1215,0:874.74:184.92	1/1:1279,0:1400.40:184.92	1/1:1632,0:2287.95:184.92	1/1:1613,0:1820.49:184.92	1/1:740,0:659.11:184.92	0/0:602,0:68.13:184.92	1/1:965,1:1097.46:184.92	1/1:1242,0:918.27:184.92	0/0:559,0:50.21:184.92	1/1:1391,0:953.65:184.92	1/1:511,0:227.92:184.92	1/1:999,0:676.01:184.92	1/1:1654,1:1622.57:184.92	1/1:1043,0:691.19:184.92	1/1:1368,1:1481.58:184.92	1/1:1935,0:1825.85:184.92	1/1:1398,0:1028.20:184.92	1/1:4347,0:7330.40:184.92	1/1:1086,1:1237.49:184.92	1/1:837,0:541.29:184.92	1/1:1210,0:851.46:184.92	1/1:1543,0:1709.76:184.92	1/1:1129,0:836.89:184.92	1/1:1076,1:442.44:184.92	1/1:5127,7:7305.68:184.92	1/1:1397,0:1154.55:184.92	1/1:1884,0:2344.24:184.92	1/1:2297,7:1361.77:184.92	1/1:1870,1:2192.40:184.92	1/1:927,1:835.86:184.92	1/1:796,1:574.24:184.92	1/1:2421,1:2928.94:184.92	1/1:750,1:604.63:184.92	1/1:1551,0:1349.83:184.92	1/1:696,1:581.39:184.92	1/1:1262,2:823.81:184.92	1/1:330,0:374.27:184.92	1/1:1578,0:1680.81:184.92	1/1:1249,0:1197.31:184.92	1/1:1100,1:1014.75:184.92	1/1:1317,0:1672.09:184.92	1/1:1771,0:2117.24:184.92	1/1:1811,0:1791.38:184.92	1/1:1294,0:1258.47:184.92	1/1:1182,0:975.58:184.92	1/1:1133,1:870.73:184.92	1/1:944,0:625.60:184.92	1/1:1279,0:953.99:184.92	1/1:1481,0:1092.62:184.92	1/1:1263,0:767.62:184.92	1/1:1248,1:900.38:184.92	1/1:685,0:438.17:184.92	1/1:746,1:221.38:184.92	1/1:1673,0:1490.43:184.92	1/1:500,0:199.57:184.92	1/1:782,2:649.79:184.92	1/1:1314,0:1249.07:184.92	1/1:1251,1:1158.39:184.92	1/1:1620,0:1213.23:184.92	1/1:1303,0:1261.65:184.92	1/1:1766,0:1751.26:184.92	1/1:1860,0:2686.76:184.92	1/1:1002,0:938.72:184.92	1/1:892,0:458.98:184.92	1/1:754,0:525.70:184.92	1/1:1030,1:811.33:184.92	1/1:1210,0:774.60:184.92	1/1:644,0:284.31:184.92	1/1:2040,0:2627.65:184.92	1/1:1395,0:1498.82:184.92	1/1:964,0:839.51:184.92
1	564751	var_4740278	G	T	.	PF_FAIL_REPEAT	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	0/0:3,0:2.08:180.95	1/1:1224,0:1002.83:180.95	1/1:2799,0:3902.49:180.95	1/1:861,0:844.08:180.95	1/1:2277,0:3062.66:180.95	1/1:1669,0:2085.05:180.95	1/1:1624,1:1860.65:180.95	1/1:1444,0:1288.20:180.95	0/0:9,0:6.23:180.95	1/1:1841,0:2802.26:180.95	1/1:1803,0:2235.21:180.95	1/1:0,0:0.00:180.95	1/1:759,0:89.04:180.95	1/1:1127,1:1455.14:180.95	1/1:1506,1:1408.25:180.95	1/1:711,1:111.60:180.95	1/1:1674,2:1467.27:180.95	1/1:616,1:393.93:180.95	1/1:1192,0:1016.40:180.95	1/1:1814,0:1940.68:180.95	1/1:1245,1:1049.99:180.95	1/1:1538,0:1839.56:180.95	1/1:2026,0:2004.63:180.95	1/1:1744,0:1667.33:180.95	0/0:6,0:4.16:180.95	1/1:1242,0:1575.84:180.95	1/1:979,1:790.98:180.95	1/1:1349,2:1105.62:180.95	1/1:1740,0:2136.59:180.95	1/1:1289,1:1131.06:180.95	1/1:1324,0:811.26:180.95	1/1:5110,13:7287.34:180.95	1/1:1448,0:1248.47:180.95	1/1:2097,0:2833.41:180.95	1/1:2517,5:1710.09:180.95	1/1:2106,0:2712.82:180.95	1/1:997,0:965.95:180.95	1/1:893,0:740.86:180.95	1/1:2544,0:3197.72:180.95	1/1:827,0:741.82:180.95	1/1:1731,4:1714.81:180.95	1/1:748,1:678.10:180.95	1/1:1538,0:1294.72:180.95	1/1:383,0:490.88:180.95	0/0:67,0:46.44:180.95	1/1:1484,1:1682.84:180.95	1/1:1176,0:1157.72:180.95	1/1:1448,0:1975.32:180.95	0/0:4,0:2.77:180.95	1/1:2065,0:2313.08:180.95	1/1:1459,0:1593.53:180.95	1/1:1322,1:1243.89:180.95	1/1:1387,0:1339.14:180.95	1/1:1040,1:794.75:180.95	0/0:10,0:6.93:180.95	1/1:1776,0:1632.04:180.95	0/0:2,0:1.38:180.95	0/0:3,0:2.08:180.95	1/1:757,0:559.49:180.95	1/1:990,4:583.78:180.95	1/1:1854,1:1847.22:180.95	1/1:592,0:335.63:180.95	1/1:918,0:898.77:180.95	1/1:1601,1:1842.52:180.95	1/1:0,0:0.00:180.95	1/1:1944,0:1809.48:180.95	1/1:1537,0:1741.35:180.95	1/1:1952,1:2136.22:180.95	1/1:2047,1:3157.64:180.95	1/1:1114,0:1161.25:180.95	1/1:903,1:480.94:180.95	0/0:32,0:22.18:180.95	1/1:1156,0:1037.72:180.95	0/0:7,0:4.86:180.95	1/1:650,0:292.96:180.95	0/0:1,0:0.70:180.95	1/1:1486,1:1695.40:180.95	1/1:1011,0:928.38:180.95
1	564758	var_2795528	T	G	.	PF_FAIL_REPEAT	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	0/0:3,0:2.08:181.47	1/1:1264,1:1081.41:181.47	1/1:2944,0:4253.12:181.47	1/1:867,0:855.96:181.47	1/1:2307,0:3133.16:181.47	1/1:1726,0:2214.08:181.47	1/1:1704,0:2028.53:181.47	1/1:1499,1:1398.53:181.47	0/0:10,0:6.93:181.47	1/1:1880,2:2910.25:181.47	1/1:1934,0:2532.96:181.47	0/0:0,0:0.00:181.47	1/1:787,0:120.70:181.47	1/1:1128,0:1452.68:181.47	1/1:1526,0:1441.57:181.47	1/1:724,0:121.16:181.47	1/1:1742,0:1585.23:181.47	1/1:637,0:423.61:181.47	1/1:1265,0:1153.59:181.47	1/1:1870,0:2057.32:181.47	1/1:1264,1:1085.01:181.47	1/1:1574,0:1918.95:181.47	1/1:2111,0:2175.31:181.47	1/1:1787,0:1751.87:181.47	0/0:6,0:4.16:181.47	1/1:1262,0:1621.31:181.47	1/1:1020,0:860.50:181.47	1/1:1390,0:1170.30:181.47	1/1:1826,0:2330.08:181.47	1/1:1332,0:1206.90:181.47	1/1:1347,0:848.48:181.47	1/1:5161,5:7379.48:181.47	1/1:1457,0:1265.23:181.47	1/1:2171,0:3008.53:181.47	1/1:2544,2:1740.86:181.47	1/1:2115,0:2733.41:181.47	1/1:1038,0:1047.35:181.47	1/1:927,0:803.57:181.47	1/1:2542,0:3193.21:181.47	1/1:877,1:842.74:181.47	1/1:1766,0:1765.63:181.47	1/1:743,1:668.63:181.47	1/1:1597,0:1404.36:181.47	1/1:381,0:486.35:181.47	0/0:66,0:45.75:181.47	1/1:1528,1:1777.11:181.47	1/1:1231,1:1273.04:181.47	1/1:1489,0:2072.71:181.47	0/0:5,0:3.46:181.47	1/1:2115,0:2419.58:181.47	1/1:1592,0:1877.31:181.47	1/1:1373,0:1338.24:181.47	1/1:1465,1:1499.65:181.47	1/1:1071,1:849.62:181.47	0/0:9,0:6.24:181.47	1/1:1838,0:1751.94:181.47	0/0:2,0:1.38:181.47	0/0:6,0:4.16:181.47	1/1:805,0:644.22:181.47	1/1:1021,0:614.71:181.47	1/1:1907,0:1947.97:181.47	1/1:616,0:373.56:181.47	1/1:956,0:974.59:181.47	1/1:1635,0:1910.57:181.47	0/0:2,0:1.39:181.47	1/1:2016,0:1949.66:181.47	1/1:1570,3:1825.83:181.47	1/1:1971,0:2170.53:181.47	1/1:2113,0:3321.12:181.47	1/1:1145,0:1224.88:181.47	1/1:896,0:465.03:181.47	0/0:36,0:24.95:181.47	1/1:1161,0:1047.21:181.47	0/0:7,0:4.86:181.47	1/1:665,0:314.80:181.47	0/0:2,0:1.38:181.47	1/1:1479,0:1675.31:181.47	1/1:1044,0:992.09:181.47
1	564758	var_3205437	A	G	.	PF_FAIL_REPEAT;MISMAPPED_UNPLACEABLE	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	0/0:0,0:0.00:1.80	0/0:0,0:0.00:1.80	0/1:1,1:4.15:1.80	0/0:0,0:0.00:1.80	0/0:1,0:0.70:1.80	0/0:0,0:0.00:1.80	0/0:1,0:0.70:1.80	0/0:0,0:0.00:1.80	0/0:0,0:0.00:1.80	0/0:0,0:0.00:1.80	0/0:0,0:0.00:1.80	0/0:1,0:0.69:1.80	0/0:0,0:0.00:1.80	0/0:0,0:0.00:1.80	0/0:0,0:0.00:1.80	0/0:0,0:0.00:1.80	0/0:0,0:0.00:1.80	0/0:0,0:0.00:1.80	0/0:0,0:0.00:1.80	0/0:0,0:0.00:1.80	0/0:0,0:0.00:1.80	0/0:0,0:0.00:1.80	0/0:0,0:0.00:1.80	0/0:0,0:0.00:1.80	0/1:1,1:4.30:1.80	0/0:0,0:0.00:1.80	0/0:1,0:0.69:1.80	0/0:0,0:0.00:1.80	0/0:0,0:0.00:1.80	0/0:0,0:0.00:1.80	0/0:0,0:0.00:1.80	0/1:3,3:12.43:1.80	0/0:0,0:0.00:1.80	0/0:2,0:1.38:1.80	0/1:1,2:4.08:1.80	0/0:0,0:0.00:1.80	0/0:0,0:0.00:1.80	0/0:0,0:0.00:1.80	0/0:0,0:0.00:1.80	0/0:0,0:0.00:1.80	0/0:0,0:0.00:1.80	0/0:0,0:0.00:1.80	0/0:0,0:0.00:1.80	0/0:0,0:0.00:1.80	0/0:0,0:0.00:1.80	0/0:0,0:0.00:1.80	0/1:1,1:3.70:1.80	0/0:0,0:0.00:1.80	0/0:3,0:2.08:1.80	0/0:0,0:0.00:1.80	0/0:0,0:0.00:1.80	0/0:0,0:0.00:1.80	0/0:1,0:0.70:1.80	1/1:0,1:0.69:1.80	0/0:0,0:0.00:1.80	0/0:0,0:0.00:1.80	0/0:0,0:0.00:1.80	0/0:1,0:0.69:1.80	0/0:1,0:0.69:1.80	0/0:0,0:0.00:1.80	0/0:0,0:0.00:1.80	0/0:0,0:0.00:1.80	0/0:0,0:0.00:1.80	0/0:0,0:0.00:1.80	0/0:0,0:0.00:1.80	0/0:0,0:0.00:1.80	0/0:0,0:0.00:1.80	0/0:0,0:0.00:1.80	0/0:0,0:0.00:1.80	0/0:0,0:0.00:1.80	0/0:1,0:0.70:1.80	0/0:0,0:0.00:1.80	0/0:1,0:0.69:1.80	0/0:1,0:0.69:1.80	0/0:1,0:0.69:1.80	0/0:3,0:2.08:1.80	0/0:0,0:0.00:1.80	0/0:0,0:0.00:1.80
1	564760	var_126112	A	C	.	PF_FAIL_REPEAT	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	0/0:3,0:2.08:181.22	1/1:1275,0:1096.50:181.22	1/1:2942,0:4248.24:181.22	1/1:865,0:851.99:181.22	1/1:2309,1:3143.25:181.22	1/1:1733,0:2230.05:181.22	1/1:1707,0:2035.09:181.22	1/1:1501,0:1397.00:181.22	0/0:10,0:6.93:181.22	1/1:1908,1:2977.30:181.22	1/1:1943,0:2553.75:181.22	1/1:0,0:0.00:181.22	1/1:791,0:125.30:181.22	1/1:1129,0:1454.96:181.22	1/1:1517,0:1424.12:181.22	1/1:727,0:124.66:181.22	1/1:1783,0:1663.92:181.22	1/1:642,0:431.94:181.22	1/1:1287,0:1195.78:181.22	1/1:1873,1:2069.04:181.22	1/1:1277,0:1103.85:181.22	1/1:1569,0:1907.87:181.22	1/1:2127,0:2207.83:181.22	1/1:1795,0:1767.71:181.22	0/0:5,0:3.46:181.22	1/1:1269,0:1637.30:181.22	1/1:1023,0:866.01:181.22	1/1:1398,0:1185.03:181.22	1/1:1832,0:2343.74:181.22	1/1:1333,0:1208.80:181.22	1/1:1368,0:882.80:181.22	1/1:5164,0:7360.91:181.22	1/1:1459,0:1268.96:181.22	1/1:2171,0:3008.53:181.22	1/1:2617,1:1858.92:181.22	1/1:2105,0:2710.53:181.22	1/1:1043,0:1057.39:181.22	1/1:926,0:801.70:181.22	1/1:2554,0:3220.30:181.22	1/1:872,0:828.17:181.22	1/1:1785,0:1803.68:181.22	1/1:743,1:668.63:181.22	1/1:1601,1:1417.37:181.22	1/1:389,0:504.57:181.22	0/0:68,0:47.13:181.22	1/1:1564,0:1850.01:181.22	1/1:1232,0:1269.97:181.22	1/1:1505,0:2111.02:181.22	0/0:5,0:3.46:181.22	1/1:2120,0:2430.30:181.22	1/1:1593,0:1879.49:181.22	1/1:1383,0:1357.99:181.22	1/1:1471,0:1506.50:181.22	1/1:1090,0:878.51:181.22	0/0:9,0:6.24:181.22	1/1:1851,0:1777.35:181.22	0/0:3,0:2.07:181.22	0/0:6,0:4.16:181.22	1/1:803,0:640.63:181.22	1/1:1042,0:648.48:181.22	1/1:1907,2:1958.34:181.22	1/1:616,0:373.56:181.22	1/1:966,0:994.80:181.22	1/1:1642,3:1939.66:181.22	0/0:2,0:1.39:181.22	1/1:2034,0:1985.11:181.22	1/1:1585,0:1844.35:181.22	1/1:1975,0:2178.93:181.22	1/1:2148,1:3416.44:181.22	1/1:1150,0:1235.22:181.22	1/1:904,0:477.18:181.22	0/0:37,0:25.65:181.22	1/1:1182,0:1087.27:181.22	0/0:8,0:5.54:181.22	1/1:663,0:311.87:181.22	0/0:2,0:1.38:181.22	1/1:1496,0:1711.61:181.22	1/1:1067,0:1037.11:181.22
1	564761	var_3833511	C	G	.	MISMAPPED_UNPLACEABLE	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	0/0:0,0:0.00:6.62	0/0:0,0:0.00:6.62	0/0:0,0:0.00:6.62	0/0:0,0:0.00:6.62	0/0:0,0:0.00:6.62	0/0:0,0:0.00:6.62	0/0:0,0:0.00:6.62	1/1:0,1:0.70:6.62	0/0:0,0:0.00:6.62	0/0:0,0:0.00:6.62	1/1:0,1:0.69:6.62	0/1:1,1:3.33:6.62	0/0:0,0:0.00:6.62	0/0:1,0:0.69:6.62	0/0:1,0:0.69:6.62	0/0:0,0:0.00:6.62	0/0:0,0:0.00:6.62	0/0:0,0:0.00:6.62	0/0:0,0:0.00:6.62	0/0:0,0:0.00:6.62	1/1:0,1:0.69:6.62	0/0:0,0:0.00:6.62	0/0:0,0:0.00:6.62	0/0:1,0:0.69:6.62	0/0:0,0:0.00:6.62	1/1:0,1:0.69:6.62	0/0:0,0:0.00:6.62	1/1:0,2:1.38:6.62	0/0:0,0:0.00:6.62	0/0:0,0:0.00:6.62	1/1:0,1:0.70:6.62	1/1:0,7:4.85:6.62	0/0:2,0:1.39:6.62	1/1:0,1:0.69:6.62	0/1:1,1:4.78:6.62	0/0:0,0:0.00:6.62	0/0:0,0:0.00:6.62	0/0:0,0:0.00:6.62	0/0:0,0:0.00:6.62	0/0:0,0:0.00:6.62	0/0:0,0:0.00:6.62	0/0:0,0:0.00:6.62	0/0:0,0:0.00:6.62	0/0:0,0:0.00:6.62	0/0:0,0:0.00:6.62	0/0:0,0:0.00:6.62	0/0:0,0:0.00:6.62	0/0:0,0:0.00:6.62	0/0:0,0:0.00:6.62	0/0:1,0:0.70:6.62	0/0:1,0:0.70:6.62	1/1:0,1:0.70:6.62	0/0:0,0:0.00:6.62	0/1:3,1:2.41:6.62	0/0:1,0:0.70:6.62	0/0:10,0:6.93:6.62	0/0:0,0:0.00:6.62	0/0:0,0:0.00:6.62	0/0:0,0:0.00:6.62	0/0:1,0:0.69:6.62	0/0:0,0:0.00:6.62	0/0:0,0:0.00:6.62	0/0:0,0:0.00:6.62	0/0:0,0:0.00:6.62	0/0:0,0:0.00:6.62	0/0:0,0:0.00:6.62	0/0:0,0:0.00:6.62	0/0:0,0:0.00:6.62	0/0:1,0:0.69:6.62	0/0:0,0:0.00:6.62	1/1:0,1:0.70:6.62	0/0:0,0:0.00:6.62	0/0:2,0:1.38:6.62	0/0:0,0:0.00:6.62	0/0:0,0:0.00:6.62	1/1:0,1:0.70:6.62	0/0:0,0:0.00:6.62	0/0:0,0:0.00:6.62
1	564766	var_1752215	C	G	.	PF_FAIL_REPEAT;MISMAPPED_UNPLACEABLE	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	1/1:1035,0:598.14:105.53	0/0:0,0:0.00:105.53	0/0:1,0:0.69:105.53	0/0:0,0:0.00:105.53	0/0:3,0:2.08:105.53	0/0:0,0:0.00:105.53	0/0:0,0:0.00:105.53	0/0:1,0:0.00:105.53	1/1:1290,2:1432.88:105.53	0/0:1,0:0.69:105.53	0/0:0,0:0.00:105.53	1/1:759,3:707.55:105.53	0/0:0,0:0.00:105.53	0/0:0,0:0.00:105.53	0/0:0,0:0.00:105.53	0/0:1,0:0.69:105.53	0/0:0,0:0.00:105.53	0/0:0,0:0.00:105.53	0/0:1,0:0.69:105.53	0/0:0,0:0.00:105.53	1/1:0,1:0.69:105.53	0/0:1,0:0.69:105.53	0/0:2,0:1.38:105.53	0/0:0,0:0.00:105.53	1/1:4428,1:7554.35:105.53	0/0:0,0:0.00:105.53	0/0:0,0:0.00:105.53	0/1:1,1:4.01:105.53	0/0:0,0:0.00:105.53	0/0:0,0:0.00:105.53	0/0:0,0:0.00:105.53	0/1:6,6:21.85:105.53	0/0:0,0:0.00:105.53	0/0:1,0:0.69:105.53	0/1:1,5:2.00:105.53	0/0:0,0:0.00:105.53	0/0:0,0:0.00:105.53	0/0:0,0:0.00:105.53	0/0:1,0:0.69:105.53	0/0:0,0:0.00:105.53	0/1:1,1:4.10:105.53	0/1:2,2:5.98:105.53	0/0:0,0:0.00:105.53	0/0:0,0:0.00:105.53	1/1:1521,0:1564.29:105.53	0/0:2,0:1.39:105.53	0/0:1,0:0.69:105.53	0/0:0,0:0.00:105.53	1/1:1896,3:2409.76:105.53	0/0:0,0:0.00:105.53	0/0:0,0:0.00:105.53	0/0:1,0:0.70:105.53	0/0:0,0:0.00:105.53	1/1:0,2:1.38:105.53	1/1:1338,0:1058.14:105.53	0/0:1,0:0.70:105.53	1/1:1278,1:797.32:105.53	1/1:1339,1:1059.58:105.53	0/0:0,0:0.00:105.53	0/0:1,0:0.69:105.53	0/0:1,0:0.70:105.53	0/0:0,0:0.00:105.53	0/0:0,0:0.00:105.53	0/0:0,0:0.00:105.53	1/1:1256,1:1168.00:105.53	0/0:1,0:0.69:105.53	0/0:1,0:0.00:105.53	1/1:0,1:0.70:105.53	0/0:1,0:0.69:105.53	0/0:0,0:0.00:105.53	1/1:0,1:0.70:105.53	1/1:728,0:482.16:105.53	0/0:1,0:0.69:105.53	1/1:1305,0:933.74:105.53	0/0:0,0:0.00:105.53	1/1:2163,0:2912.46:105.53	0/0:2,0:1.39:105.53	0/0:0,0:0.00:105.53
1	564768	var_4862375	T	C	.	PF_FAIL_REPEAT	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	1/1:1257,1:975.23:190.22	1/1:1232,1:1022.68:190.22	1/1:2927,2:4222.03:190.22	1/1:827,0:777.58:190.22	1/1:2355,0:3246.75:190.22	1/1:1681,1:2117.22:190.22	1/1:1760,1:2157.22:190.22	1/1:1533,1:1464.41:190.22	1/1:1644,0:2211.62:190.22	1/1:1948,1:3079.94:190.22	1/1:1870,0:2386.35:190.22	1/1:750,1:682.76:190.22	1/1:815,0:153.35:190.22	1/1:1136,2:1479.78:190.22	1/1:1497,0:1385.53:190.22	1/1:719,1:120.78:190.22	1/1:1750,1:1606.06:190.22	1/1:660,0:462.19:190.22	1/1:1254,0:1132.65:190.22	1/1:1774,1:1863.85:190.22	1/1:1290,0:1128.11:190.22	1/1:1507,0:1771.88:190.22	1/1:2163,0:2281.42:190.22	1/1:1750,0:1679.06:190.22	1/1:4825,2:8650.01:190.22	1/1:1272,1:1649.02:190.22	1/1:999,0:822.07:190.22	1/1:1381,0:1153.78:190.22	1/1:1780,0:2226.08:190.22	1/1:1328,2:1209.18:190.22	1/1:1414,0:959.11:190.22	1/1:5123,4:7282.99:190.22	1/1:1473,0:1295.17:190.22	1/1:2207,0:3094.65:190.22	1/1:2755,2:2103.44:190.22	1/1:1998,1:2474.10:190.22	1/1:995,0:962.03:190.22	1/1:917,0:784.99:190.22	1/1:2598,1:3325.66:190.22	1/1:862,1:813.61:190.22	1/1:1824,0:1882.42:190.22	1/1:745,1:672.41:190.22	1/1:1621,1:1455.08:190.22	1/1:383,0:490.88:190.22	0/0:64,0:44.36:190.22	1/1:1571,4:1882.80:190.22	1/1:1173,1:1156.87:190.22	1/1:1509,0:2120.62:190.22	1/1:2065,1:2790.47:190.22	1/1:2065,0:2313.08:190.22	1/1:1545,1:1780.91:190.22	1/1:1359,2:1320.51:190.22	1/1:1425,1:1419.51:190.22	1/1:1119,0:931.16:190.22	0/0:7,0:4.85:190.22	1/1:1889,1:1857.70:190.22	1/1:1500,0:1168.88:190.22	1/1:1581,0:1506.62:190.22	1/1:731,0:514.85:190.22	1/1:1086,1:725.94:190.22	1/1:1883,0:1899.65:190.22	1/1:608,0:360.81:190.22	1/1:934,0:930.51:190.22	1/1:1697,0:2046.03:190.22	1/1:1354,0:1354.92:190.22	1/1:2035,3:2002.22:190.22	1/1:1552,1:1778.58:190.22	1/1:1904,1:2036.53:190.22	1/1:2197,2:3548.10:190.22	1/1:1109,0:1151.07:190.22	1/1:923,0:506.33:190.22	1/1:825,1:654.03:190.22	1/1:1189,0:1100.70:190.22	1/1:1486,1:1261.15:190.22	1/1:634,0:270.03:190.22	0/1:3,1:2.56:190.22	1/1:1497,0:1713.75:190.22	1/1:1047,2:1007.25:190.22
1	564772	var_5236242	G	C	.	PF_FAIL_REPEAT;MISMAPPED_UNPLACEABLE	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	0/0:0,0:0.00:3.15	0/0:0,0:0.00:3.15	0/0:0,0:0.00:3.15	0/0:0,0:0.00:3.15	0/0:0,0:0.00:3.15	0/0:0,0:0.00:3.15	0/0:0,0:0.00:3.15	0/0:0,0:0.00:3.15	0/0:0,0:0.00:3.15	0/0:0,0:0.00:3.15	0/0:0,0:0.00:3.15	0/1:1,1:3.33:3.15	0/0:0,0:0.00:3.15	0/0:1,0:0.69:3.15	0/0:0,0:0.00:3.15	0/0:0,0:0.00:3.15	0/0:0,0:0.00:3.15	0/0:0,0:0.00:3.15	0/0:0,0:0.00:3.15	0/0:0,0:0.00:3.15	0/0:0,0:0.00:3.15	0/0:0,0:0.00:3.15	0/0:0,0:0.00:3.15	0/0:0,0:0.00:3.15	0/0:1,0:0.69:3.15	0/0:0,0:0.00:3.15	0/0:0,0:0.00:3.15	0/0:0,0:0.00:3.15	0/0:1,0:0.69:3.15	0/0:0,0:0.00:3.15	0/0:0,0:0.00:3.15	0/0:0,0:0.00:3.15	0/0:0,0:0.00:3.15	0/0:0,0:0.00:3.15	0/0:0,0:0.00:3.15	0/0:0,0:0.00:3.15	0/0:0,0:0.00:3.15	0/0:0,0:0.00:3.15	0/0:0,0:0.00:3.15	0/0:0,0:0.00:3.15	0/0:0,0:0.00:3.15	0/0:0,0:0.00:3.15	0/0:0,0:0.00:3.15	0/0:0,0:0.00:3.15	0/1:2,1:3.22:3.15	0/0:0,0:0.00:3.15	0/0:0,0:0.00:3.15	0/0:0,0:0.00:3.15	0/1:2,1:3.20:3.15	0/0:0,0:0.00:3.15	0/0:0,0:0.00:3.15	0/0:0,0:0.00:3.15	0/0:0,0:0.00:3.15	0/0:0,0:0.00:3.15	0/0:0,0:0.00:3.15	0/0:0,0:0.00:3.15	0/0:0,0:0.00:3.15	0/0:0,0:0.00:3.15	0/0:2,0:1.39:3.15	0/0:0,0:0.00:3.15	0/0:0,0:0.00:3.15	0/0:0,0:0.00:3.15	0/0:0,0:0.00:3.15	0/0:0,0:0.00:3.15	0/0:0,0:0.00:3.15	0/0:0,0:0.00:3.15	0/0:0,0:0.00:3.15	0/0:0,0:0.00:3.15	0/0:0,0:0.00:3.15	0/0:0,0:0.00:3.15	0/0:0,0:0.00:3.15	0/0:0,0:0.00:3.15	0/0:1,0:0.69:3.15	0/0:0,0:0.00:3.15	0/0:0,0:0.00:3.15	1/1:0,1:0.70:3.15	0/0:0,0:0.00:3.15	0/0:0,0:0.00:3.15
1	564774	var_5660551	C	G	.	PF_FAIL_REPEAT	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	1/1:1264,0:982.26:190.32	1/1:1230,0:1013.74:190.32	1/1:2907,1:4168.50:190.32	1/1:853,0:828.32:190.32	1/1:2416,0:3392.51:190.32	1/1:1730,0:2223.20:190.32	1/1:1786,0:2209.88:190.32	1/1:1532,0:1457.09:190.32	1/1:1690,2:2329.45:190.32	1/1:1988,0:3178.40:190.32	1/1:1873,2:2403.00:190.32	1/1:762,2:709.67:190.32	1/1:817,0:155.72:190.32	1/1:1176,0:1563.34:190.32	1/1:1561,0:1509.94:190.32	1/1:742,0:142.30:190.32	1/1:1763,0:1625.41:190.32	1/1:665,0:470.69:190.32	1/1:1257,0:1138.35:190.32	1/1:1801,0:1913.84:190.32	1/1:1287,0:1122.51:190.32	1/1:1535,1:1838.13:190.32	1/1:2228,0:2415.82:190.32	1/1:1774,0:1726.20:190.32	1/1:4831,1:8661.74:190.32	1/1:1316,0:1745.65:190.32	1/1:995,1:819.89:190.32	1/1:1380,0:1151.94:190.32	1/1:1785,0:2237.32:190.32	1/1:1353,0:1247.03:190.32	1/1:1431,0:987.70:190.32	1/1:5207,11:7515.21:190.32	1/1:1484,0:1315.85:190.32	1/1:2188,0:3049.13:190.32	1/1:2828,3:2237.77:190.32	1/1:2028,0:2535.96:190.32	1/1:997,1:970.89:190.32	1/1:929,0:807.30:190.32	1/1:2598,0:3320.08:190.32	1/1:857,1:803.95:190.32	1/1:1821,0:1876.34:190.32	1/1:734,2:655.72:190.32	1/1:1634,0:1474.23:190.32	1/1:385,0:495.43:190.32	0/0:62,0:42.97:190.32	1/1:1612,0:1955.39:190.32	1/1:1209,0:1223.56:190.32	1/1:1507,1:2120.73:190.32	1/1:2051,0:2752.37:190.32	1/1:2089,2:2374.39:190.32	1/1:1512,0:1705.23:190.32	1/1:1353,0:1298.94:190.32	1/1:1422,0:1408.27:190.32	1/1:1139,0:967.91:190.32	0/0:11,0:7.63:190.32	1/1:1869,0:1812.68:190.32	1/1:1510,0:1186.67:190.32	1/1:1600,0:1543.79:190.32	1/1:743,0:535.34:190.32	1/1:1120,0:777.58:190.32	1/1:1906,0:1945.94:190.32	1/1:611,0:365.58:190.32	1/1:951,0:964.53:190.32	1/1:1708,1:2075.53:190.32	1/1:1344,0:1334.98:190.32	1/1:2020,0:1957.52:190.32	1/1:1578,1:1834.45:190.32	1/1:1953,0:2132.83:190.32	1/1:2227,1:3622.18:190.32	1/1:1131,0:1196.04:190.32	1/1:979,0:594.48:190.32	1/1:855,0:703.10:190.32	1/1:1223,0:1166.55:190.32	1/1:1467,0:1220.81:190.32	1/1:654,0:298.75:190.32	1/0:2,1:3.25:190.32	1/1:1585,0:1904.79:190.32	1/1:1074,0:1050.92:190.32
1	564775	var_370173	G	C	.	MISMAPPED_UNPLACEABLE	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	0/0:0,0:0.00:102.38	0/0:0,0:0.00:102.38	0/1:2,1:3.47:102.38	0/0:1,0:0.69:102.38	1/1:0,1:0.70:102.38	1/1:0,1:0.69:102.38	0/0:1,0:0.70:102.38	0/0:3,0:2.08:102.38	1/1:0,2:1.38:102.38	0/0:0,0:0.00:102.38	0/1:1,1:3.88:102.38	0/0:1,0:0.69:102.38	0/0:0,0:0.00:102.38	0/0:0,0:0.00:102.38	0/0:1,0:0.69:102.38	0/0:0,0:0.00:102.38	1/1:0,2:1.39:102.38	0/0:0,0:0.00:102.38	0/0:0,0:0.00:102.38	0/0:0,0:0.00:102.38	0/0:0,0:0.00:102.38	0/0:1,0:0.69:102.38	0/0:1,0:0.69:102.38	1/1:0,1:0.69:102.38	0/0:2,0:1.39:102.38	0/0:1,0:0.69:102.38	0/0:0,0:0.00:102.38	0/0:0,0:0.00:102.38	0/0:0,0:0.00:102.38	0/0:0,0:0.00:102.38	0/0:0,0:0.00:102.38	0/1:7,4:13.70:102.38	0/0:0,0:0.00:102.38	0/1:2,1:3.22:102.38	0/1:4,1:2.70:102.38	0/0:1,0:0.69:102.38	0/0:1,0:0.70:102.38	1/1:0,1:0.69:102.38	0/0:1,0:0.69:102.38	1/1:0,1:0.69:102.38	0/1:1,1:4.10:102.38	0/1:1,2:2.65:102.38	0/0:1,0:0.69:102.38	1/1:0,1:0.70:102.38	0/0:1,0:0.69:102.38	0/0:1,0:0.69:102.38	0/0:1,0:0.69:102.38	0/0:0,0:0.00:102.38	1/1:0,1:0.69:102.38	0/0:0,0:0.00:102.38	0/0:0,0:0.00:102.38	0/0:0,0:0.00:102.38	0/0:0,0:0.00:102.38	1/1:0,1:0.69:102.38	1/1:1444,0:1251.74:102.38	0/0:0,0:0.00:102.38	1/1:0,1:0.69:102.38	1/1:0,2:1.39:102.38	1/1:0,1:0.69:102.38	0/0:0,0:0.00:102.38	0/0:1,0:0.70:102.38	0/0:0,0:0.00:102.38	0/0:0,0:0.00:102.38	1/1:0,1:0.69:102.38	1/1:0,1:0.69:102.38	0/0:0,0:0.00:102.38	0/1:1,3:2.44:102.38	0/0:0,0:0.00:102.38	0/1:1,4:1.62:102.38	1/1:0,1:0.69:102.38	0/0:0,0:0.00:102.38	0/0:1,0:0.69:102.38	0/0:1,0:0.69:102.38	1/1:0,1:0.69:102.38	0/0:0,0:0.00:102.38	0/0:0,0:0.00:102.38	1/1:0,1:0.70:102.38	0/0:0,0:0.00:102.38
1	564775	var_704174	C	G	.	MISMAPPED_UNPLACEABLE	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	0/0:0,0:0.00:4.58	0/0:0,0:0.00:4.58	1/1:0,1:0.69:4.58	1/1:0,1:0.69:4.58	1/1:0,2:1.38:4.58	1/1:0,1:0.69:4.58	0/0:1,0:0.70:4.58	0/0:0,0:0.00:4.58	0/0:0,0:0.00:4.58	0/0:1,0:0.69:4.58	1/1:0,1:0.69:4.58	0/0:0,0:0.00:4.58	0/0:0,0:0.00:4.58	0/0:2,0:1.39:4.58	0/0:0,0:0.00:4.58	0/0:0,0:0.00:4.58	0/0:0,0:0.00:4.58	0/0:0,0:0.00:4.58	0/0:0,0:0.00:4.58	0/0:0,0:0.00:4.58	0/0:0,0:0.00:4.58	1/1:0,1:0.69:4.58	0/0:0,0:0.00:4.58	1/1:0,2:1.38:4.58	0/0:0,0:0.00:4.58	0/0:0,0:0.00:4.58	0/0:0,0:0.00:4.58	0/0:0,0:0.00:4.58	0/0:0,0:0.00:4.58	0/0:0,0:0.00:4.58	0/0:0,0:0.00:4.58	0/1:1,6:1.28:4.58	0/0:0,0:0.00:4.58	0/1:1,2:3.22:4.58	1/1:0,9:6.24:4.58	0/0:0,0:0.00:4.58	0/1:1,1:3.56:4.58	0/0:0,0:0.00:4.58	0/0:0,0:0.00:4.58	0/0:0,0:0.00:4.58	0/0:0,0:0.00:4.58	0/0:0,0:0.00:4.58	0/0:0,0:0.00:4.58	0/0:0,0:0.00:4.58	0/0:0,0:0.00:4.58	0/0:2,0:1.39:4.58	0/0:0,0:0.00:4.58	0/0:0,0:0.00:4.58	0/0:0,0:0.00:4.58	0/0:1,0:0.70:4.58	0/0:1,0:0.70:4.58	0/0:2,0:1.39:4.58	0/0:0,0:0.00:4.58	0/0:1,0:0.69:4.58	0/0:0,0:0.00:4.58	0/0:0,0:0.00:4.58	0/0:0,0:0.00:4.58	0/0:0,0:0.00:4.58	0/0:0,0:0.00:4.58	0/0:0,0:0.00:4.58	0/0:0,0:0.00:4.58	0/0:0,0:0.00:4.58	0/0:0,0:0.00:4.58	0/0:0,0:0.00:4.58	0/0:0,0:0.00:4.58	0/0:0,0:0.00:4.58	0/0:4,0:2.78:4.58	0/0:0,0:0.00:4.58	1/1:0,1:0.69:4.58	0/0:0,0:0.00:4.58	0/0:0,0:0.00:4.58	0/0:0,0:0.00:4.58	0/0:0,0:0.00:4.58	0/0:0,0:0.00:4.58	0/0:0,0:0.00:4.58	0/0:0,0:0.00:4.58	0/0:0,0:0.00:4.58	0/0:0,0:0.00:4.58
1	564779	var_1165738	T	G	.	PF_FAIL_REPEAT;MISMAPPED_UNPLACEABLE	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	0/0:1,0:0.70:2.39	0/0:0,0:0.00:2.39	0/0:0,0:0.00:2.39	0/0:0,0:0.00:2.39	0/1:1,1:4.00:2.39	0/0:0,0:0.00:2.39	0/0:0,0:0.00:2.39	1/1:0,1:0.70:2.39	0/1:1,1:3.68:2.39	0/0:2,0:1.38:2.39	1/1:0,1:0.69:2.39	0/1:2,3:5.29:2.39	0/0:0,0:0.00:2.39	0/1:1,1:3.36:2.39	0/0:0,0:0.00:2.39	0/0:0,0:0.00:2.39	0/0:0,0:0.00:2.39	0/0:1,0:0.69:2.39	0/0:0,0:0.00:2.39	0/0:0,0:0.00:2.39	0/0:0,0:0.00:2.39	0/0:0,0:0.00:2.39	0/0:1,0:0.69:2.39	0/0:0,0:0.00:2.39	0/0:0,0:0.00:2.39	0/0:0,0:0.00:2.39	0/0:0,0:0.00:2.39	0/0:0,0:0.00:2.39	0/0:0,0:0.00:2.39	0/0:3,0:2.08:2.39	0/0:1,0:0.70:2.39	0/1:5,6:18.22:2.39	0/1:1,1:4.03:2.39	0/0:0,0:0.00:2.39	0/1:1,4:2.70:2.39	0/0:1,0:0.69:2.39	0/0:0,0:0.00:2.39	0/0:0,0:0.00:2.39	0/1:1,1:4.20:2.39	0/0:0,0:0.00:2.39	0/0:2,0:1.39:2.39	0/0:0,0:0.00:2.39	0/0:1,0:0.69:2.39	0/0:0,0:0.00:2.39	0/0:0,0:0.00:2.39	0/1:1,1:3.79:2.39	0/0:0,0:0.00:2.39	0/0:0,0:0.00:2.39	0/1:3,2:6.41:2.39	0/0:0,0:0.00:2.39	0/0:0,0:0.00:2.39	0/0:1,0:0.70:2.39	0/0:0,0:0.00:2.39	0/0:0,0:0.00:2.39	0/0:0,0:0.00:2.39	0/0:0,0:0.00:2.39	0/0:1,0:0.69:2.39	1/1:0,2:1.39:2.39	0/0:0,0:0.00:2.39	0/0:0,0:0.00:2.39	0/0:3,0:2.08:2.39	0/0:0,0:0.00:2.39	0/0:0,0:0.00:2.39	0/0:0,0:0.00:2.39	0/0:0,0:0.00:2.39	0/0:0,0:0.00:2.39	0/0:1,0:0.70:2.39	0/0:0,0:0.00:2.39	0/0:1,0:0.69:2.39	0/0:0,0:0.00:2.39	0/0:2,0:1.38:2.39	0/0:0,0:0.00:2.39	0/0:0,0:0.00:2.39	0/0:1,0:0.69:2.39	0/0:0,0:0.00:2.39	0/0:3,0:2.08:2.39	0/0:0,0:0.00:2.39	0/0:0,0:0.00:2.39
1	564782	var_45987	A	G	.	PF_FAIL_REPEAT;MISMAPPED_UNPLACEABLE	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	0/0:0,0:0.00:5.45	1/1:0,1:0.70:5.45	0/1:1,1:4.15:5.45	0/0:0,0:0.00:5.45	1/1:0,1:0.70:5.45	0/0:0,0:0.00:5.45	0/0:0,0:0.00:5.45	0/0:0,0:0.00:5.45	0/0:0,0:0.00:5.45	1/1:0,1:0.69:5.45	0/0:0,0:0.00:5.45	0/0:0,0:0.00:5.45	1/1:0,1:0.70:5.45	0/0:0,0:0.00:5.45	0/0:0,0:0.00:5.45	0/0:0,0:0.00:5.45	0/0:0,0:0.00:5.45	0/0:0,0:0.00:5.45	0/0:0,0:0.00:5.45	0/0:0,0:0.00:5.45	0/0:1,0:0.69:5.45	0/0:0,0:0.00:5.45	0/0:0,0:0.00:5.45	0/0:0,0:0.00:5.45	0/0:0,0:0.00:5.45	0/0:1,0:0.69:5.45	0/0:0,0:0.00:5.45	1/1:0,2:1.38:5.45	0/0:0,0:0.00:5.45	0/0:0,0:0.00:5.45	0/0:0,0:0.00:5.45	0/1:4,4:15.78:5.45	0/0:1,0:0.70:5.45	0/0:1,0:0.69:5.45	0/1:2,2:8.86:5.45	1/1:0,1:0.69:5.45	0/0:0,0:0.00:5.45	0/0:1,0:0.69:5.45	1/1:0,1:0.69:5.45	0/0:0,0:0.00:5.45	0/1:1,1:4.10:5.45	0/0:0,0:0.00:5.45	0/0:1,0:0.69:5.45	0/0:0,0:0.00:5.45	0/0:0,0:0.00:5.45	0/1:3,1:2.41:5.45	0/0:1,0:0.69:5.45	0/0:0,0:0.00:5.45	0/0:0,0:0.00:5.45	0/0:1,0:0.70:5.45	0/0:0,0:0.00:5.45	0/0:0,0:0.00:5.45	0/0:0,0:0.00:5.45	0/0:0,0:0.00:5.45	0/0:0,0:0.00:5.45	0/1:1,1:4.18:5.45	0/0:0,0:0.00:5.45	0/0:0,0:0.00:5.45	0/0:0,0:0.00:5.45	0/0:0,0:0.00:5.45	0/0:0,0:0.00:5.45	1/1:0,1:0.69:5.45	0/0:0,0:0.00:5.45	0/0:0,0:0.00:5.45	0/0:0,0:0.00:5.45	0/0:1,0:0.69:5.45	0/1:1,2:3.13:5.45	1/1:0,1:0.70:5.45	0/0:0,0:0.00:5.45	0/0:0,0:0.00:5.45	0/0:1,0:0.70:5.45	0/0:0,0:0.00:5.45	0/0:0,0:0.00:5.45	0/0:0,0:0.00:5.45	0/0:0,0:0.00:5.45	0/0:0,0:0.00:5.45	0/0:1,0:0.70:5.45	1/1:0,1:0.69:5.45
1	564786	var_4791180	G	C	.	PF_FAIL_REPEAT;MISMAPPED_UNPLACEABLE	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	0/0:0,0:0.00:1.74	0/0:0,0:0.00:1.74	0/0:1,0:0.69:1.74	0/0:0,0:0.00:1.74	0/0:2,0:1.38:1.74	0/0:0,0:0.00:1.74	0/0:1,0:0.70:1.74	0/0:0,0:0.00:1.74	0/1:1,1:3.68:1.74	0/1:2,2:6.53:1.74	0/0:1,0:0.69:1.74	0/1:1,1:3.33:1.74	0/0:0,0:0.00:1.74	0/0:1,0:0.69:1.74	0/0:0,0:0.00:1.74	0/0:0,0:0.00:1.74	0/0:0,0:0.00:1.74	0/0:0,0:0.00:1.74	0/0:0,0:0.00:1.74	0/0:0,0:0.00:1.74	0/0:0,0:0.00:1.74	0/0:0,0:0.00:1.74	0/0:2,0:1.38:1.74	0/0:1,0:0.69:1.74	0/0:0,0:0.00:1.74	0/0:1,0:0.69:1.74	0/0:0,0:0.00:1.74	0/0:1,0:0.69:1.74	0/0:1,0:0.69:1.74	0/0:0,0:0.00:1.74	0/0:0,0:0.00:1.74	0/0:10,0:6.93:1.74	0/0:0,0:0.00:1.74	1/1:0,1:0.69:1.74	0/1:4,2:7.48:1.74	0/0:0,0:0.00:1.74	0/0:1,0:0.70:1.74	0/0:0,0:0.00:1.74	0/0:0,0:0.00:1.74	0/0:0,0:0.00:1.74	0/1:2,1:3.40:1.74	0/1:1,2:2.65:1.74	0/0:1,0:0.69:1.74	0/0:0,0:0.00:1.74	0/0:0,0:0.00:1.74	0/0:1,0:0.69:1.74	1/1:0,1:0.69:1.74	0/0:0,0:0.00:1.74	0/0:1,0:0.69:1.74	0/0:1,0:0.70:1.74	1/1:0,1:0.70:1.74	0/0:0,0:0.00:1.74	0/0:0,0:0.00:1.74	1/1:0,1:0.69:1.74	0/0:1,0:0.70:1.74	0/0:1,0:0.70:1.74	0/0:0,0:0.00:1.74	0/1:1,1:4.03:1.74	0/0:2,0:1.39:1.74	0/0:1,0:0.69:1.74	0/0:0,0:0.00:1.74	0/0:0,0:0.00:1.74	0/0:0,0:0.00:1.74	0/0:0,0:0.00:1.74	0/0:0,0:0.00:1.74	0/0:1,0:0.69:1.74	0/1:1,1:3.82:1.74	1/1:0,1:0.70:1.74	0/0:2,0:1.39:1.74	0/0:0,0:0.00:1.74	0/0:0,0:0.00:1.74	0/0:0,0:0.00:1.74	1/1:0,2:1.38:1.74	0/0:3,0:2.08:1.74	0/0:0,0:0.00:1.74	0/0:1,0:0.70:1.74	0/0:1,0:0.70:1.74	0/0:0,0:0.00:1.74
1	564789	var_5825516	G	A	.	PF_FAIL_REPEAT;MISMAPPED_UNPLACEABLE	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	1/1:0,2:1.39:4.34	0/0:0,0:0.00:4.34	1/1:0,1:0.69:4.34	0/0:0,0:0.00:4.34	0/1:1,4:1.92:4.34	0/0:0,0:0.00:4.34	0/0:0,0:0.00:4.34	0/0:1,0:0.70:4.34	0/0:0,0:0.00:4.34	0/0:0,0:0.00:4.34	0/0:0,0:0.00:4.34	0/1:2,3:5.29:4.34	0/0:0,0:0.00:4.34	1/1:0,1:0.69:4.34	0/0:0,0:0.00:4.34	1/1:0,1:0.69:4.34	0/1:1,1:4.17:4.34	0/0:0,0:0.00:4.34	0/0:0,0:0.00:4.34	0/0:0,0:0.00:4.34	0/0:1,0:0.69:4.34	0/0:0,0:0.00:4.34	0/1:1,1:4.24:4.34	0/0:0,0:0.00:4.34	0/1:1,3:2.92:4.34	0/0:0,0:0.00:4.34	0/0:0,0:0.00:4.34	0/0:0,0:0.00:4.34	0/0:0,0:0.00:4.34	0/0:1,0:0.69:4.34	0/0:0,0:0.00:4.34	0/1:5,4:15.08:4.34	0/0:0,0:0.00:4.34	1/1:0,2:1.38:4.34	0/1:6,4:14.54:4.34	0/0:0,0:0.00:4.34	0/0:1,0:0.70:4.34	0/0:0,0:0.00:4.34	0/0:0,0:0.00:4.34	0/0:0,0:0.00:4.34	1/1:0,1:0.70:4.34	0/0:2,0:1.39:4.34	0/0:0,0:0.00:4.34	0/0:0,0:0.00:4.34	0/0:0,0:0.00:4.34	1/1:0,1:0.69:4.34	0/0:2,0:1.38:4.34	0/0:0,0:0.00:4.34	0/0:0,0:0.00:4.34	0/0:0,0:0.00:4.34	0/0:0,0:0.00:4.34	0/0:0,0:0.00:4.34	0/0:0,0:0.00:4.34	1/1:0,2:1.38:4.34	0/1:1,1:4.03:4.34	0/0:2,0:1.38:4.34	0/0:0,0:0.00:4.34	1/1:0,1:0.69:4.34	0/0:1,0:0.69:4.34	0/0:1,0:0.69:4.34	0/0:0,0:0.00:4.34	0/0:0,0:0.00:4.34	0/0:0,0:0.00:4.34	0/0:0,0:0.00:4.34	0/0:0,0:0.00:4.34	0/0:1,0:0.69:4.34	0/0:0,0:0.00:4.34	0/0:1,0:0.70:4.34	1/1:0,2:1.39:4.34	0/0:0,0:0.00:4.34	0/0:0,0:0.00:4.34	0/0:0,0:0.00:4.34	0/1:1,1:3.77:4.34	0/0:1,0:0.69:4.34	0/0:0,0:0.00:4.34	1/1:0,1:0.70:4.34	1/1:0,1:0.70:4.34	0/0:0,0:0.00:4.34
1	564792	var_126111	C	G	.	PF_FAIL_REPEAT	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	0/0:3,0:2.08:181.49	1/1:1253,0:1055.84:181.49	1/1:2957,0:4284.91:181.49	1/1:854,1:835.06:181.49	1/1:2349,1:3237.88:181.49	1/1:1713,0:2184.48:181.49	1/1:1718,0:2059.22:181.49	1/1:1519,0:1431.80:181.49	0/0:10,0:6.93:181.49	1/1:1916,1:2997.76:181.49	1/1:1903,0:2461.68:181.49	0/0:0,0:0.00:181.49	1/1:799,0:134.57:181.49	1/1:1126,0:1448.12:181.49	1/1:1509,0:1408.65:181.49	1/1:723,0:120.00:181.49	1/1:1787,0:1671.64:181.49	1/1:653,0:450.37:181.49	1/1:1281,0:1184.24:181.49	1/1:1856,0:2027.99:181.49	1/1:1291,0:1129.99:181.49	1/1:1542,0:1848.34:181.49	1/1:2156,0:2267.07:181.49	1/1:1770,0:1718.32:181.49	0/0:4,0:2.77:181.49	1/1:1285,0:1673.99:181.49	1/1:1033,0:884.49:181.49	1/1:1408,0:1203.52:181.49	1/1:1803,0:2277.93:181.49	1/1:1344,0:1229.78:181.49	1/1:1388,0:915.80:181.49	1/1:5150,3:7343.57:181.49	1/1:1465,0:1280.18:181.49	1/1:2185,0:3041.95:181.49	1/1:2692,3:1998.49:181.49	1/1:2089,0:2674.02:181.49	1/1:1023,0:1017.37:181.49	1/1:921,1:797.38:181.49	1/1:2566,0:3247.44:181.49	1/1:874,0:832.07:181.49	1/1:1809,0:1852.04:181.49	1/1:748,1:678.10:181.49	1/1:1609,0:1426.93:181.49	1/1:388,0:502.28:181.49	0/0:70,0:48.52:181.49	1/1:1573,1:1874.83:181.49	1/1:1189,0:1183.54:181.49	1/1:1516,0:2137.46:181.49	0/0:5,0:3.46:181.49	1/1:2100,0:2387.51:181.49	1/1:1584,0:1859.91:181.49	1/1:1375,0:1342.18:181.49	1/1:1455,0:1474.24:181.49	1/1:1099,0:894.77:181.49	0/0:7,0:4.85:181.49	1/1:1899,0:1871.95:181.49	0/0:3,0:2.07:181.49	0/0:7,0:4.85:181.49	1/1:771,0:583.90:181.49	1/1:1064,0:684.32:181.49	1/1:1901,2:1946.23:181.49	1/1:605,0:356.06:181.49	1/1:955,0:972.58:181.49	1/1:1679,0:2006.46:181.49	0/0:2,0:1.39:181.49	1/1:2054,1:2030.32:181.49	1/1:1577,0:1827.08:181.49	1/1:1964,0:2155.85:181.49	1/1:2169,0:3465.76:181.49	1/1:1146,0:1226.94:181.49	1/1:918,0:498.61:181.49	0/0:35,0:24.26:181.49	1/1:1185,0:1093.02:181.49	0/0:9,0:6.23:181.49	1/1:661,0:308.94:181.49	0/0:2,0:1.38:181.49	1/1:1502,0:1724.47:181.49	1/1:1054,0:1011.61:181.49
1	564794	var_3609944	G	C	.	PF_FAIL_REPEAT	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	1/1:1232,0:925.90:192.96	1/1:1282,1:1114.81:192.96	1/1:2738,1:3762.76:192.96	1/1:832,1:792.05:192.96	1/1:2321,0:3166.18:192.96	1/1:1736,0:2236.91:192.96	1/1:1773,4:2198.72:192.96	1/1:1535,1:1468.31:192.96	1/1:1728,2:2419.95:192.96	1/1:2084,1:3434.97:192.96	1/1:1857,0:2356.83:192.96	1/1:781,0:737.54:192.96	1/1:773,0:104.75:192.96	1/1:1228,4:1701.22:192.96	1/1:1626,0:1638.97:192.96	1/1:725,0:122.33:192.96	1/1:1654,0:1419.61:192.96	1/1:688,0:510.23:192.96	1/1:1235,1:1101.93:192.96	1/1:1782,0:1874.80:192.96	1/1:1241,1:1042.65:192.96	1/1:1505,0:1767.53:192.96	1/1:2381,2:2750.12:192.96	1/1:1821,0:1819.44:192.96	1/1:4782,0:8519.56:192.96	1/1:1292,0:1690.11:192.96	1/1:1047,0:910.52:192.96	1/1:1380,0:1151.94:192.96	1/1:1807,1:2292.22:192.96	1/1:1335,0:1212.61:192.96	1/1:1381,1:909.80:192.96	1/1:5495,5:8199.65:192.96	1/1:1584,0:1507.54:192.96	1/1:2184,1:3044.86:192.96	1/1:2838,2:2250.56:192.96	1/1:1993,1:2462.94:192.96	1/1:998,0:967.92:192.96	1/1:914,0:779.44:192.96	1/1:2512,0:3125.75:192.96	1/1:892,0:867.31:192.96	1/1:1815,1:1869.65:192.96	1/1:745,0:667.69:192.96	1/1:1631,0:1468.52:192.96	1/1:377,0:477.30:192.96	1/1:1748,0:2040.29:192.96	1/1:1573,7:1897.35:192.96	1/1:1238,0:1282.15:192.96	1/1:1517,0:2139.86:192.96	1/1:1956,0:2532.31:192.96	1/1:2084,0:2353.41:192.96	1/1:1499,0:1677.65:192.96	1/1:1343,0:1279.41:192.96	1/1:1366,0:1298.09:192.96	1/1:1135,4:978.12:192.96	1/1:1397,0:1164.91:192.96	1/1:1789,1:1662.58:192.96	1/1:1573,0:1300.31:192.96	1/1:1516,1:1386.61:192.96	1/1:776,0:592.68:192.96	1/1:1126,0:787.74:192.96	1/1:2021,0:2181.50:192.96	1/1:627,0:391.26:192.96	1/1:1009,0:1082.85:192.96	1/1:1682,0:2013.05:192.96	1/1:1376,0:1399.05:192.96	1/1:1944,0:1809.48:192.96	1/1:1593,0:1861.66:192.96	1/1:1956,0:2139.10:192.96	1/1:2209,3:3583.43:192.96	1/1:1125,0:1183.73:192.96	1/1:1073,0:749.55:192.96	1/1:897,0:780.47:192.96	1/1:1242,1:1208.91:192.96	1/1:1471,0:1228.13:192.96	1/1:701,0:368.60:192.96	1/1:2409,0:3502.69:192.96	1/1:1610,0:1959.97:192.96	1/1:1104,0:1110.58:192.96
1	564797	var_1533099	A	C	.	MISMAPPED_UNPLACEABLE	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	0/0:0,0:0.00:5.69	1/1:0,1:0.70:5.69	0/0:0,0:0.00:5.69	0/0:0,0:0.00:5.69	1/1:0,1:0.70:5.69	0/0:0,0:0.00:5.69	1/1:0,3:2.08:5.69	0/0:0,0:0.00:5.69	1/1:0,1:0.70:5.69	0/0:0,0:0.00:5.69	0/0:0,0:0.00:5.69	1/1:0,1:0.69:5.69	1/1:0,1:0.70:5.69	0/1:1,1:3.36:5.69	1/1:0,1:0.69:5.69	0/0:0,0:0.00:5.69	1/1:0,1:0.69:5.69	0/0:0,0:0.00:5.69	0/0:1,0:0.69:5.69	0/0:0,0:0.00:5.69	0/0:2,0:1.38:5.69	0/0:0,0:0.00:5.69	0/0:0,0:0.00:5.69	0/0:0,0:0.00:5.69	0/0:0,0:0.00:5.69	0/0:0,0:0.00:5.69	0/0:1,0:0.69:5.69	0/0:1,0:0.69:5.69	0/1:1,1:3.85:5.69	0/0:1,0:0.69:5.69	0/0:0,0:0.00:5.69	0/0:6,0:4.16:5.69	1/1:0,2:1.39:5.69	0/1:1,2:3.22:5.69	1/1:0,2:1.38:5.69	0/0:0,0:0.00:5.69	1/1:0,1:0.70:5.69	0/0:0,0:0.00:5.69	0/0:0,0:0.00:5.69	0/0:0,0:0.00:5.69	0/0:1,0:0.70:5.69	0/0:1,0:0.69:5.69	1/1:0,13:9.01:5.69	0/0:0,0:0.00:5.69	0/0:0,0:0.00:5.69	1/1:0,1:0.69:5.69	0/0:0,0:0.00:5.69	0/0:0,0:0.00:5.69	0/0:1,0:0.69:5.69	0/0:0,0:0.00:5.69	0/0:0,0:0.00:5.69	0/0:0,0:0.00:5.69	0/1:1,2:3.19:5.69	0/0:0,0:0.00:5.69	0/0:0,0:0.00:5.69	0/1:1,1:4.18:5.69	1/1:0,1:0.69:5.69	0/0:0,0:0.00:5.69	0/0:1,0:0.69:5.69	0/0:0,0:0.00:5.69	0/0:2,0:1.38:5.69	0/0:0,0:0.00:5.69	0/0:1,0:0.70:5.69	0/0:0,0:0.00:5.69	0/0:1,0:0.69:5.69	0/1:1,1:4.26:5.69	1/1:0,1:0.70:5.69	0/1:1,1:4.10:5.69	0/0:0,0:0.00:5.69	0/0:1,0:0.69:5.69	1/1:0,1:0.70:5.69	0/0:0,0:0.00:5.69	0/0:1,0:0.69:5.69	0/0:0,0:0.00:5.69	0/0:0,0:0.00:5.69	0/0:0,0:0.00:5.69	0/1:3,1:2.39:5.69	0/0:0,0:0.00:5.69
1	564800	var_4862374	C	T	.	PF_FAIL_REPEAT	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	1/1:1260,0:975.17:189.86	1/1:1230,0:1013.74:189.86	1/1:2918,0:4189.72:189.86	1/1:827,0:777.58:189.86	1/1:2386,0:3320.63:189.86	1/1:1678,0:2105.29:189.86	1/1:1773,2:2190.69:189.86	1/1:1533,0:1459.03:189.86	1/1:1664,1:2263.65:189.86	1/1:1965,1:3123.81:189.86	1/1:1875,0:2397.72:189.86	1/1:751,0:679.93:189.86	1/1:815,0:153.35:189.86	1/1:1140,0:1480.16:189.86	1/1:1509,0:1408.65:189.86	1/1:738,0:137.57:189.86	1/1:1771,1:1646.34:189.86	1/1:649,0:443.64:189.86	1/1:1249,0:1123.16:189.86	1/1:1783,0:1876.85:189.86	1/1:1288,1:1129.67:189.86	1/1:1522,0:1804.56:189.86	1/1:2186,0:2328.76:189.86	1/1:1760,0:1698.67:189.86	1/1:4790,0:8541.81:189.86	1/1:1300,0:1708.57:189.86	1/1:997,0:818.43:189.86	1/1:1378,0:1148.29:189.86	1/1:1781,1:2233.56:189.86	1/1:1351,0:1243.19:189.86	1/1:1442,0:1006.31:189.86	1/1:5128,6:7303.93:189.86	1/1:1469,0:1287.67:189.86	1/1:2186,2:3054.25:189.86	1/1:2843,5:2273.89:189.86	1/1:2018,1:2518.87:189.86	1/1:997,0:965.95:189.86	1/1:917,0:784.99:189.86	1/1:2626,0:3383.97:189.86	1/1:858,0:801.06:189.86	1/1:1838,2:1921.16:189.86	1/1:755,2:695.42:189.86	1/1:1632,0:1470.43:189.86	1/1:381,0:486.35:189.86	0/0:61,0:42.28:189.86	1/1:1593,0:1913.50:189.86	1/1:1173,0:1151.78:189.86	1/1:1506,0:2113.42:189.86	1/1:2085,0:2832.20:189.86	1/1:2056,0:2294.04:189.86	1/1:1529,0:1741.45:189.86	1/1:1354,0:1300.91:189.86	1/1:1418,1:1405.60:189.86	1/1:1115,0:923.86:189.86	0/0:9,0:6.24:189.86	1/1:1892,0:1858.07:189.86	1/1:1507,0:1181.33:189.86	1/1:1608,0:1559.51:189.86	1/1:728,0:509.77:189.86	1/1:1111,0:762.40:189.86	1/1:1902,0:1937.87:189.86	1/1:599,1:351.41:189.86	1/1:930,0:922.55:189.86	1/1:1718,0:2092.42:189.86	1/1:1347,0:1340.96:189.86	1/1:2042,0:2000.92:189.86	1/1:1570,0:1812.01:189.86	1/1:1933,0:2091.13:189.86	1/1:2203,1:3559.37:189.86	1/1:1124,0:1181.69:189.86	1/1:940,0:532.73:189.86	1/1:834,0:665.19:189.86	1/1:1212,0:1145.13:189.86	1/1:1483,0:1250.17:189.86	1/1:633,0:268.61:189.86	0/0:2,0:1.38:189.86	1/1:1586,0:1906.99:189.86	1/1:1060,1:1028.37:189.86
1	564805	var_3151272	C	G	.	MAPQ,PF_FAIL_REPEAT	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	1/1:1203,1:880.91:191.44	1/1:1255,0:1059.52:191.44	1/1:2679,0:3617.98:191.44	1/1:795,0:716.27:191.44	1/1:2222,2:2944.54:191.44	1/1:1688,0:2127.85:191.44	1/1:1734,0:2094.43:191.44	1/1:1493,0:1381.60:191.44	1/1:1715,0:2379.46:191.44	1/1:2041,0:3316.73:191.44	1/1:1782,0:2188.35:191.44	1/1:742,0:662.89:191.44	1/1:739,0:67.06:191.44	1/1:1214,2:1661.13:191.44	1/1:1586,0:1559.25:191.44	1/1:733,0:131.67:191.44	1/1:1587,0:1296.65:191.44	1/1:666,0:472.38:191.44	1/1:1143,1:932.04:191.44	1/1:1760,0:1829.84:191.44	1/1:1204,1:975.40:191.44	1/1:1449,0:1646.97:191.44	1/1:2567,0:3146.31:191.44	1/1:1745,0:1669.29:191.44	1/1:4668,1:8209.63:191.44	1/1:1233,0:1555.48:191.44	1/1:1011,0:843.97:191.44	1/1:1372,0:1137.32:191.44	1/1:1799,0:2268.89:191.44	1/1:1279,0:1107.10:191.44	1/1:1332,0:824.15:191.44	1/1:5593,12:8471.88:191.44	1/1:1646,0:1629.58:191.44	1/1:2075,0:2781.84:191.44	1/1:2816,4:2221.17:191.44	1/1:1886,0:2221.78:191.44	1/1:972,0:917.15:191.44	1/1:869,0:697.38:191.44	1/1:2457,0:3003.02:191.44	1/1:865,0:814.59:191.44	1/1:1746,0:1725.80:191.44	1/1:733,0:645.10:191.44	1/1:1564,0:1342.77:191.44	1/1:376,0:475.04:191.44	1/1:1780,0:2109.85:191.44	1/1:1477,1:1662.79:191.44	1/1:1226,1:1262.91:191.44	1/1:1479,0:2048.85:191.44	1/1:1868,0:2332.59:191.44	1/1:2051,0:2283.47:191.44	1/1:1486,0:1650.19:191.44	1/1:1288,1:1178.58:191.44	1/1:1268,0:1110.85:191.44	1/1:1080,1:865.72:191.44	1/1:1395,0:1161.25:191.44	1/1:1659,2:1422.18:191.44	1/1:1599,0:1347.94:191.44	1/1:1497,0:1345.05:191.44	1/1:756,0:557.75:191.44	1/1:1064,0:684.32:191.44	1/1:1965,0:2065.96:191.44	1/1:600,0:348.16:191.44	1/1:955,0:972.58:191.44	1/1:1633,0:1906.24:191.44	1/1:1343,0:1333.00:191.44	1/1:1868,1:1670.05:191.44	1/1:1531,1:1733.79:191.44	1/1:1943,0:2111.96:191.44	1/1:2164,0:3452.78:191.44	1/1:1094,1:1125.63:191.44	1/1:1120,0:830.23:191.44	1/1:882,0:752.61:191.44	1/1:1199,0:1119.97:191.44	1/1:1424,0:1142.78:191.44	1/1:710,0:382.35:191.44	1/1:2360,0:3383.03:191.44	1/1:1591,0:1918.00:191.44	1/1:1058,0:1019.44:191.44
1	564813	var_2904130	A	C	.	PF_FAIL_REPEAT	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	1/1:1272,0:996.48:193.35	1/1:1296,0:1135.67:193.35	1/1:2851,0:4027.39:193.35	1/1:850,2:831.29:193.35	1/1:2424,1:3417.13:193.35	1/1:1734,0:2232.34:193.35	1/1:1816,1:2282.44:193.35	1/1:1550,1:1497.64:193.35	1/1:1763,2:2504.05:193.35	1/1:2094,2:3465.73:193.35	1/1:1858,0:2359.10:193.35	1/1:760,1:701.81:193.35	1/1:811,0:148.63:193.35	1/1:1229,3:1700.23:193.35	1/1:1623,0:1632.96:193.35	1/1:756,1:164.47:193.35	1/1:1725,0:1552.87:193.35	1/1:696,0:524.17:193.35	1/1:1234,1:1100.04:193.35	1/1:1803,0:1917.96:193.35	1/1:1284,0:1116.91:193.35	1/1:1524,0:1808.91:193.35	1/1:2343,0:2658.21:193.35	1/1:1819,0:1815.44:193.35	1/1:4805,0:8583.56:193.35	1/1:1307,1:1729.63:193.35	1/1:1048,0:912.39:193.35	1/1:1406,0:1199.82:193.35	1/1:1857,1:2406.07:193.35	1/1:1368,0:1275.89:193.35	1/1:1444,0:1009.70:193.35	1/1:5400,2:7949.97:193.35	1/1:1561,1:1468.30:193.35	1/1:2213,0:3109.06:193.35	1/1:2834,0:2231.78:193.35	1/1:2078,0:2648.99:193.35	1/1:1001,0:973.82:193.35	1/1:938,0:824.12:193.35	1/1:2551,1:3219.10:193.35	1/1:880,0:843.77:193.35	1/1:1846,0:1927.21:193.35	1/1:727,1:638.59:193.35	1/1:1677,0:1556.47:193.35	1/1:380,1:487.75:193.35	1/1:1737,0:2016.51:193.35	1/1:1608,3:1960.29:193.35	1/1:1257,1:1326.00:193.35	1/1:1538,0:2190.57:193.35	1/1:2060,0:2773.45:193.35	1/1:2129,1:2455.13:193.35	1/1:1530,0:1743.58:193.35	1/1:1369,3:1344.32:193.35	1/1:1417,0:1398.34:193.35	1/1:1144,1:982.34:193.35	1/1:1439,0:1242.44:193.35	1/1:1881,0:1836.33:193.35	1/1:1542,0:1244.07:193.35	1/1:1604,0:1551.64:193.35	1/1:772,0:585.65:193.35	1/1:1147,0:823.55:193.35	1/1:1990,0:2117.35:193.35	1/1:624,0:386.42:193.35	1/1:1002,0:1068.39:193.35	1/1:1726,0:2110.17:193.35	1/1:1358,0:1362.92:193.35	1/1:1996,0:1910.45:193.35	1/1:1630,2:1951.95:193.35	1/1:1971,1:2176.02:193.35	1/1:2299,0:3807.05:193.35	1/1:1146,0:1226.94:193.35	1/1:1025,0:669.29:193.35	1/1:868,0:726.83:193.35	1/1:1244,1:1212.84:193.35	1/1:1507,0:1294.52:193.35	1/1:674,0:328.07:193.35	1/1:2477,0:3670.40:193.35	1/1:1675,0:2105.22:193.35	1/1:1092,1:1091.62:193.35
1	564813	var_5328377	G	C	.	MAPQ,PF_FAIL_REPEAT;MISMAPPED_UNPLACEABLE	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	0/0:0,0:0.00:1.76	1/1:0,2:1.38:1.76	0/0:0,0:0.00:1.76	1/1:0,1:0.69:1.76	1/1:0,1:0.70:1.76	0/0:0,0:0.00:1.76	0/0:3,0:2.08:1.76	0/0:0,0:0.00:1.76	0/0:0,0:0.00:1.76	0/0:2,0:1.38:1.76	0/0:0,0:0.00:1.76	0/0:2,0:1.39:1.76	0/0:0,0:0.00:1.76	0/0:1,0:0.69:1.76	0/0:0,0:0.00:1.76	0/0:0,0:0.00:1.76	0/0:0,0:0.00:1.76	0/0:0,0:0.00:1.76	0/0:0,0:0.00:1.76	0/0:0,0:0.00:1.76	0/0:0,0:0.00:1.76	0/0:0,0:0.00:1.76	0/0:0,0:0.00:1.76	0/0:1,0:0.69:1.76	0/0:0,0:0.00:1.76	0/0:1,0:0.69:1.76	0/0:0,0:0.00:1.76	0/0:0,0:0.00:1.76	1/1:0,1:0.69:1.76	0/0:0,0:0.00:1.76	0/0:1,0:0.70:1.76	0/1:8,3:8.96:1.76	0/0:0,0:0.00:1.76	0/0:0,0:0.00:1.76	0/1:3,2:8.17:1.76	0/0:1,0:0.69:1.76	0/0:0,0:0.00:1.76	0/0:0,0:0.00:1.76	0/0:0,0:0.00:1.76	0/0:0,0:0.00:1.76	0/0:0,0:0.00:1.76	1/1:0,1:0.69:1.76	0/0:1,0:0.69:1.76	1/1:0,1:0.70:1.76	0/0:0,0:0.00:1.76	1/1:0,1:0.69:1.76	1/1:0,1:0.69:1.76	0/0:0,0:0.00:1.76	0/0:0,0:0.00:1.76	0/0:0,0:0.00:1.76	0/0:0,0:0.00:1.76	0/0:0,0:0.00:1.76	0/0:0,0:0.00:1.76	1/1:0,1:0.69:1.76	0/0:0,0:0.00:1.76	0/0:0,0:0.00:1.76	0/0:0,0:0.00:1.76	0/0:0,0:0.00:1.76	0/0:0,0:0.00:1.76	0/0:0,0:0.00:1.76	0/0:0,0:0.00:1.76	0/0:0,0:0.00:1.76	0/0:0,0:0.00:1.76	0/0:2,0:1.39:1.76	0/0:0,0:0.00:1.76	0/1:1,1:4.26:1.76	1/1:0,1:0.70:1.76	0/0:0,0:0.00:1.76	0/0:2,0:1.39:1.76	0/0:0,0:0.00:1.76	0/0:0,0:0.00:1.76	0/0:0,0:0.00:1.76	0/0:1,0:0.69:1.76	0/0:0,0:0.00:1.76	0/0:0,0:0.00:1.76	1/1:0,1:0.70:1.76	0/0:1,0:0.70:1.76	0/0:0,0:0.00:1.76
1	564814	var_107433	G	A	.	MAPQ,PF_FAIL_REPEAT	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	1/1:1199,0:868.66:190.66	1/1:1200,0:959.48:190.66	1/1:2660,3:3588.27:190.66	1/1:793,0:712.48:190.66	1/1:2130,0:2723.06:190.66	1/1:1647,0:2035.76:190.66	1/1:1672,1:1964.06:190.66	1/1:1422,0:1246.80:190.66	1/1:1675,0:2284.53:190.66	1/1:1975,0:3144.69:190.66	1/1:1759,0:2137.31:190.66	1/1:719,2:628.57:190.66	1/1:699,0:24.74:190.66	1/1:1241,0:1716.29:190.66	1/1:1583,0:1553.32:190.66	1/1:702,0:95.92:190.66	1/1:1515,0:1167.67:190.66	1/1:667,0:474.09:190.66	1/1:1106,0:860.54:190.66	1/1:1770,1:1855.67:190.66	1/1:1191,0:946.75:190.66	1/1:1442,1:1637.20:190.66	1/1:2657,0:3348.04:190.66	1/1:1747,0:1673.19:190.66	1/1:4547,1:7877.67:190.66	1/1:1215,0:1514.96:190.66	1/1:1020,0:860.50:190.66	1/1:1338,0:1075.65:190.66	1/1:1798,0:2266.63:190.66	1/1:1260,0:1071.86:190.66	1/1:1261,0:711.36:190.66	1/1:5733,9:8813.03:190.66	1/1:1671,1:1684.88:190.66	1/1:2020,0:2653.95:190.66	1/1:2808,1:2191.63:190.66	1/1:1853,0:2150.27:190.66	1/1:977,0:926.85:190.66	1/1:841,0:647.49:190.66	1/1:2338,0:2741.71:190.66	1/1:877,0:837.92:190.66	1/1:1765,0:1763.63:190.66	1/1:700,2:592.73:190.66	1/1:1522,0:1265.39:190.66	1/1:374,0:470.54:190.66	1/1:1716,1:1976.61:190.66	1/1:1435,0:1574.22:190.66	1/1:1197,0:1199.51:190.66	1/1:1461,1:2010.98:190.66	1/1:1888,0:2377.62:190.66	1/1:2024,0:2226.65:190.66	1/1:1459,0:1593.53:190.66	1/1:1232,0:1067.72:190.66	1/1:1280,1:1138.66:190.66	1/1:1084,0:867.72:190.66	1/1:1406,0:1181.42:190.66	1/1:1599,0:1301.93:190.66	1/1:1619,0:1384.88:190.66	1/1:1452,0:1260.42:190.66	1/1:756,0:557.75:190.66	1/1:1058,0:674.50:190.66	1/1:2011,0:2160.75:190.66	1/1:578,0:313.94:190.66	1/1:941,0:944.48:190.66	1/1:1628,0:1895.43:190.66	1/1:1331,0:1309.17:190.66	1/1:1813,0:1561.34:190.66	1/1:1544,1:1761.48:190.66	1/1:1959,0:2145.38:190.66	1/1:2146,0:3406.18:190.66	1/1:1096,0:1124.69:190.66	1/1:1181,0:937.86:190.66	1/1:895,0:776.74:190.66	1/1:1177,0:1077.69:190.66	1/1:1394,0:1089.11:190.66	1/1:692,0:354.97:190.66	1/1:2338,0:3329.65:190.66	1/1:1507,0:1735.21:190.66	1/1:1048,0:999.89:190.66
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1	564817	var_3240644	T	G	.	MAPQ;MISMAPPED_UNPLACEABLE	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	0/0:1,0:0.70:4.50	0/0:1,0:0.70:4.50	0/0:2,0:1.39:4.50	0/0:2,0:1.39:4.50	1/1:0,2:1.38:4.50	0/0:0,0:0.00:4.50	0/0:0,0:0.00:4.50	0/0:0,0:0.00:4.50	0/0:1,0:0.70:4.50	0/1:2,1:2.92:4.50	0/0:2,0:1.38:4.50	0/0:2,0:1.39:4.50	0/0:0,0:0.00:4.50	0/0:2,0:1.39:4.50	0/0:0,0:0.00:4.50	0/0:3,0:2.08:4.50	0/1:1,1:4.17:4.50	0/0:0,0:0.00:4.50	0/0:0,0:0.00:4.50	0/0:4,0:2.77:4.50	0/0:3,0:2.08:4.50	0/0:2,0:1.39:4.50	0/0:1,0:0.69:4.50	0/0:0,0:0.00:4.50	0/1:1,1:4.30:4.50	0/0:0,0:0.00:4.50	0/0:2,0:1.38:4.50	0/0:1,0:0.69:4.50	0/1:1,1:3.85:4.50	0/0:1,0:0.69:4.50	0/0:0,0:0.00:4.50	0/1:5,9:16.13:4.50	0/0:1,0:0.70:4.50	0/0:0,0:0.00:4.50	0/1:2,3:8.17:4.50	0/0:1,0:0.69:4.50	0/0:1,0:0.70:4.50	0/0:3,0:2.08:4.50	0/0:0,0:0.00:4.50	0/0:1,0:0.69:4.50	1/1:0,1:0.70:4.50	0/0:1,0:0.69:4.50	0/0:0,0:0.00:4.50	0/0:1,0:0.70:4.50	0/0:3,0:2.08:4.50	0/0:2,0:1.39:4.50	0/0:0,0:0.00:4.50	0/0:0,0:0.00:4.50	0/0:0,0:0.00:4.50	0/1:1,1:4.13:4.50	1/1:0,1:0.70:4.50	0/0:6,0:4.16:4.50	0/0:2,0:1.38:4.50	0/0:0,0:0.00:4.50	0/0:0,0:0.00:4.50	0/0:1,0:0.70:4.50	0/0:0,0:0.00:4.50	0/0:2,0:1.39:4.50	0/0:2,0:1.39:4.50	0/0:0,0:0.00:4.50	0/1:1,1:4.15:4.50	0/0:2,0:1.39:4.50	0/0:4,0:2.77:4.50	0/0:0,0:0.00:4.50	0/0:2,0:1.39:4.50	0/1:2,2:7.82:4.50	0/1:4,1:1.74:4.50	0/0:7,0:4.85:4.50	0/0:1,0:0.69:4.50	0/0:1,0:0.69:4.50	0/0:1,0:0.70:4.50	0/0:0,0:0.00:4.50	0/0:0,0:0.00:4.50	0/0:0,0:0.00:4.50	0/0:0,0:0.00:4.50	0/1:2,1:3.25:4.50	0/0:1,0:0.70:4.50	0/0:0,0:0.00:4.50
1	564819	var_727189	G	C	.	MAPQ,PF_FAIL_REPEAT;MISMAPPED_UNPLACEABLE	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	0/0:0,0:0.00:6.71	0/0:1,0:0.70:6.71	0/1:1,1:4.15:6.71	1/1:0,1:0.69:6.71	0/0:0,0:0.00:6.71	0/0:0,0:0.00:6.71	1/1:0,1:0.70:6.71	0/0:0,0:0.00:6.71	0/0:0,0:0.00:6.71	0/0:0,0:0.00:6.71	0/0:0,0:0.00:6.71	1/1:0,1:0.69:6.71	0/0:1,0:0.70:6.71	0/1:1,1:3.36:6.71	0/0:0,0:0.00:6.71	0/0:1,0:0.69:6.71	0/0:0,0:0.00:6.71	0/0:1,0:0.69:6.71	0/0:0,0:0.00:6.71	0/0:0,0:0.00:6.71	0/0:0,0:0.00:6.71	0/0:0,0:0.00:6.71	0/0:1,0:0.69:6.71	0/0:2,0:1.38:6.71	0/0:1,0:0.69:6.71	1/1:0,2:1.39:6.71	0/0:0,0:0.00:6.71	1/1:0,1:0.69:6.71	0/1:1,1:3.85:6.71	0/0:0,0:0.00:6.71	0/0:0,0:0.00:6.71	0/1:8,2:4.63:6.71	0/0:0,0:0.00:6.71	0/0:0,0:0.00:6.71	0/1:2,2:8.86:6.71	1/1:0,1:0.69:6.71	0/0:0,0:0.00:6.71	0/0:0,0:0.00:6.71	1/1:0,1:0.69:6.71	1/1:0,1:0.69:6.71	0/1:1,2:3.40:6.71	0/0:0,0:0.00:6.71	0/0:0,0:0.00:6.71	0/0:0,0:0.00:6.71	0/1:1,1:3.92:6.71	0/1:1,1:3.79:6.71	0/0:1,0:0.69:6.71	1/1:0,1:0.70:6.71	0/1:1,3:2.51:6.71	0/0:0,0:0.00:6.71	0/0:0,0:0.00:6.71	0/0:0,0:0.00:6.71	0/0:0,0:0.00:6.71	0/0:1,0:0.69:6.71	0/0:0,0:0.00:6.71	0/0:0,0:0.00:6.71	1/1:0,1:0.69:6.71	0/0:0,0:0.00:6.71	0/0:0,0:0.00:6.71	0/0:0,0:0.00:6.71	1/1:0,1:0.70:6.71	0/0:0,0:0.00:6.71	0/0:0,0:0.00:6.71	1/1:0,1:0.69:6.71	1/1:0,1:0.69:6.71	0/0:0,0:0.00:6.71	0/0:1,0:0.70:6.71	0/1:1,1:4.10:6.71	0/0:0,0:0.00:6.71	0/0:0,0:0.00:6.71	1/1:0,1:0.70:6.71	0/0:0,0:0.00:6.71	0/0:0,0:0.00:6.71	1/1:0,1:0.69:6.71	0/0:0,0:0.00:6.71	0/0:0,0:0.00:6.71	0/0:0,0:0.00:6.71	0/0:0,0:0.00:6.71
1	564820	var_1925835	T	G	.	PF_FAIL_REPEAT	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	1/1:1232,0:925.90:192.90	1/1:1295,0:1133.79:192.90	1/1:2792,0:3885.76:192.90	1/1:828,0:779.51:192.90	1/1:2360,0:3258.63:192.90	1/1:1743,0:2252.92:192.90	1/1:1798,0:2236.74:192.90	1/1:1535,0:1462.93:192.90	1/1:1719,1:2394.07:192.90	1/1:2085,0:3432.61:192.90	1/1:1854,0:2350.03:192.90	1/1:769,3:726.73:192.90	1/1:794,0:128.77:192.90	1/1:1246,1:1732.95:192.90	1/1:1643,0:1673.16:192.90	1/1:732,0:130.50:192.90	1/1:1685,0:1477.43:192.90	1/1:700,0:531.17:192.90	1/1:1229,0:1085.40:192.90	1/1:1798,1:1913.10:192.90	1/1:1267,0:1085.28:192.90	1/1:1521,0:1802.37:192.90	1/1:2377,0:2730.96:192.90	1/1:1838,0:1853.46:192.90	1/1:4773,0:8494.54:192.90	1/1:1312,0:1736.36:192.90	1/1:1075,0:963.14:192.90	1/1:1380,2:1162.05:192.90	1/1:1829,0:2336.90:192.90	1/1:1338,1:1223.62:192.90	1/1:1386,0:912.49:192.90	1/1:5476,10:8172.74:192.90	1/1:1578,0:1495.86:192.90	1/1:2179,0:3027.62:192.90	1/1:2830,2:2236.27:192.90	1/1:2008,0:2491.10:192.90	1/1:1020,0:1011.41:192.90	1/1:927,0:803.57:192.90	1/1:2531,0:3168.44:192.90	1/1:889,0:861.42:192.90	1/1:1831,0:1896.65:192.90	1/1:752,0:680.97:192.90	1/1:1642,0:1489.44:192.90	1/1:374,0:470.54:192.90	1/1:1730,0:2001.42:192.90	1/1:1557,1:1839.93:192.90	1/1:1244,0:1294.36:192.90	1/1:1522,0:2151.92:192.90	1/1:1986,0:2601.32:192.90	1/1:2106,1:2405.84:192.90	1/1:1520,0:1722.25:192.90	1/1:1361,2:1324.44:192.90	1/1:1391,1:1352.28:192.90	1/1:1153,0:993.85:192.90	1/1:1418,1:1208.93:192.90	1/1:1825,0:1726.63:192.90	1/1:1566,1:1293.10:192.90	1/1:1545,0:1436.81:192.90	1/1:789,0:615.65:192.90	1/1:1127,0:789.44:192.90	1/1:2007,1:2158.00:192.90	1/1:631,0:397.75:192.90	1/1:1010,0:1084.92:192.90	1/1:1689,0:2028.42:192.90	1/1:1370,0:1386.98:192.90	1/1:1960,0:1840.40:192.90	1/1:1609,2:1906.12:192.90	1/1:1960,0:2147.47:192.90	1/1:2249,0:3674.88:192.90	1/1:1125,0:1183.73:192.90	1/1:1042,0:697.46:192.90	1/1:884,0:756.31:192.90	1/1:1241,0:1201.78:192.90	1/1:1472,1:1235.43:192.90	1/1:686,0:345.95:192.90	1/1:2432,3:3573.42:192.90	1/1:1625,0:1993.26:192.90	1/1:1119,0:1140.71:192.90
1	564828	var_1214357	G	C	.	MAPQ,PF_FAIL_REPEAT;MISMAPPED_UNPLACEABLE	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	1/1:0,1:0.70:6.12	0/0:0,0:0.00:6.12	0/0:0,0:0.00:6.12	0/0:0,0:0.00:6.12	0/0:0,0:0.00:6.12	0/0:0,0:0.00:6.12	1/1:0,1:0.70:6.12	0/1:1,1:4.00:6.12	0/0:1,0:0.70:6.12	0/0:1,0:0.69:6.12	0/0:0,0:0.00:6.12	0/1:1,1:3.33:6.12	0/0:0,0:0.00:6.12	0/0:0,0:0.00:6.12	0/0:1,0:0.69:6.12	0/0:0,0:0.00:6.12	0/0:0,0:0.00:6.12	0/0:0,0:0.00:6.12	0/0:0,0:0.00:6.12	0/0:3,0:2.08:6.12	0/0:0,0:0.00:6.12	0/0:0,0:0.00:6.12	0/0:1,0:0.69:6.12	0/0:1,0:0.69:6.12	0/0:1,0:0.69:6.12	0/0:1,0:0.69:6.12	0/0:0,0:0.00:6.12	0/0:0,0:0.00:6.12	0/0:0,0:0.00:6.12	0/0:0,0:0.00:6.12	0/0:0,0:0.00:6.12	0/1:15,6:15.61:6.12	0/0:1,0:0.70:6.12	0/0:0,0:0.00:6.12	0/1:3,1:3.39:6.12	1/1:0,1:0.69:6.12	0/0:0,0:0.00:6.12	0/0:1,0:0.69:6.12	0/0:0,0:0.00:6.12	0/0:0,0:0.00:6.12	0/0:1,0:0.70:6.12	1/1:0,1:0.69:6.12	0/0:0,0:0.00:6.12	0/0:0,0:0.00:6.12	0/0:0,0:0.00:6.12	0/0:1,0:0.69:6.12	1/1:0,1:0.69:6.12	0/0:1,0:0.70:6.12	0/0:0,0:0.00:6.12	0/0:0,0:0.00:6.12	0/0:0,0:0.00:6.12	0/0:1,0:0.70:6.12	1/1:0,1:0.70:6.12	0/0:0,0:0.00:6.12	0/0:0,0:0.00:6.12	0/0:0,0:0.00:6.12	0/0:1,0:0.69:6.12	0/0:0,0:0.00:6.12	0/0:0,0:0.00:6.12	0/0:0,0:0.00:6.12	1/1:0,1:0.70:6.12	0/0:1,0:0.69:6.12	0/0:0,0:0.00:6.12	0/0:0,0:0.00:6.12	0/0:0,0:0.00:6.12	1/1:0,1:0.69:6.12	0/0:1,0:0.70:6.12	0/0:1,0:0.70:6.12	1/1:0,1:0.69:6.12	1/1:0,1:0.69:6.12	0/0:1,0:0.70:6.12	0/0:0,0:0.00:6.12	0/0:0,0:0.00:6.12	0/0:0,0:0.00:6.12	0/0:0,0:0.00:6.12	0/0:1,0:0.70:6.12	0/0:0,0:0.00:6.12	0/1:1,1:3.62:6.12
1	564832	var_977627	G	C	.	PF_FAIL_REPEAT	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	1/1:1092,0:689.41:188.11	1/1:1114,0:808.16:188.11	1/1:2439,0:3065.34:188.11	1/1:789,0:704.91:188.11	1/1:1970,0:2365.00:188.11	1/1:1558,0:1839.43:188.11	1/1:1488,0:1570.22:188.11	1/1:1358,2:1138.40:188.11	1/1:1516,0:1916.86:188.11	1/1:1795,0:2686.93:188.11	1/1:1683,0:1970.80:188.11	1/1:706,1:600.51:188.11	0/0:612,0:59.23:188.11	1/1:1181,1:1579.72:188.11	1/1:1566,0:1519.77:188.11	1/1:621,1:14.57:188.11	1/1:1419,0:1001.05:188.11	1/1:618,0:392.38:188.11	1/1:1007,0:689.43:188.11	1/1:1736,2:1791.29:188.11	1/1:1139,0:854.73:188.11	1/1:1423,0:1591.73:188.11	1/1:2555,0:3119.65:188.11	1/1:1740,0:1659.52:188.11	1/1:4421,0:7529.74:188.11	1/1:1131,0:1329.47:188.11	1/1:966,1:767.69:188.11	1/1:1306,0:1018.41:188.11	1/1:1725,1:2108.51:188.11	1/1:1135,0:847.33:188.11	1/1:1130,1:519.50:188.11	1/1:5813,3:8990.17:188.11	1/1:1654,0:1645.50:188.11	1/1:1870,0:2312.90:188.11	1/1:2560,4:1777.60:188.11	1/1:1726,0:1880.63:188.11	1/1:931,0:838.50:188.11	1/1:802,0:579.55:188.11	1/1:2168,0:2379.00:188.11	1/1:817,0:722.95:188.11	1/1:1668,0:1572.65:188.11	1/1:655,1:507.87:188.11	1/1:1439,0:1115.90:188.11	1/1:381,0:486.35:188.11	1/1:1537,1:1602.08:188.11	1/1:1327,0:1352.22:188.11	1/1:1103,0:1015.41:188.11	1/1:1367,1:1791.27:188.11	1/1:1846,0:2283.29:188.11	1/1:1972,1:2123.74:188.11	1/1:1351,1:1377.17:188.11	1/1:1157,0:930.29:188.11	1/1:1220,0:1021.87:188.11	1/1:978,1:687.79:188.11	1/1:1295,0:981.97:188.11	1/1:1528,0:1174.91:188.11	1/1:1569,1:1298.55:188.11	1/1:1298,0:981.65:188.11	1/1:728,0:509.77:188.11	1/1:936,0:482.48:188.11	1/1:1933,0:2000.64:188.11	1/1:555,0:279.05:188.11	1/1:919,1:905.60:188.11	1/1:1461,2:1553.07:188.11	1/1:1291,0:1230.56:188.11	1/1:1678,0:1315.55:188.11	1/1:1363,0:1380.92:188.11	1/1:1878,0:1977.54:188.11	1/1:1955,0:2921.15:188.11	1/1:1097,0:1126.72:188.11	1/1:1185,0:945.03:188.11	1/1:873,0:736.02:188.11	1/1:1029,1:809.55:188.11	1/1:1325,1:973.60:188.11	1/1:685,0:344.45:188.11	1/1:2211,2:3035.50:188.11	1/1:1390,0:1488.47:188.11	1/1:989,1:891.52:188.11
1	564834	var_4601398	C	T	.	MAPQ,PF_FAIL_REPEAT;MISMAPPED_UNPLACEABLE	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	0/0:0,0:0.00:3.53	0/1:1,2:3.21:3.53	0/0:0,0:0.00:3.53	0/0:0,0:0.00:3.53	1/1:0,1:0.70:3.53	0/0:0,0:0.00:3.53	0/0:0,0:0.00:3.53	1/1:0,1:0.70:3.53	0/0:0,0:0.00:3.53	0/0:0,0:0.00:3.53	0/0:0,0:0.00:3.53	0/0:1,0:0.69:3.53	1/1:0,1:0.70:3.53	0/0:0,0:0.00:3.53	0/0:0,0:0.00:3.53	0/0:0,0:0.00:3.53	0/0:0,0:0.00:3.53	0/0:0,0:0.00:3.53	0/0:0,0:0.00:3.53	0/0:0,0:0.00:3.53	0/0:0,0:0.00:3.53	1/1:0,1:0.69:3.53	0/1:1,1:4.24:3.53	0/0:0,0:0.00:3.53	0/0:0,0:0.00:3.53	0/0:2,0:1.39:3.53	0/0:0,0:0.00:3.53	1/1:0,4:2.77:3.53	0/0:0,0:0.00:3.53	1/1:0,1:0.69:3.53	0/0:1,0:0.70:3.53	0/1:3,6:10.35:3.53	0/0:0,0:0.00:3.53	0/0:1,0:0.69:3.53	1/1:1,8:0.08:3.53	0/0:0,0:0.00:3.53	0/0:0,0:0.00:3.53	0/0:0,0:0.00:3.53	0/0:0,0:0.00:3.53	0/0:0,0:0.00:3.53	0/0:1,0:0.70:3.53	0/0:0,0:0.00:3.53	0/0:0,0:0.00:3.53	0/0:0,0:0.00:3.53	0/0:0,0:0.00:3.53	0/0:1,0:0.69:3.53	0/0:0,0:0.00:3.53	0/0:0,0:0.00:3.53	1/1:0,1:0.69:3.53	0/0:1,0:0.70:3.53	1/1:0,1:0.70:3.53	0/0:0,0:0.00:3.53	0/0:0,0:0.00:3.53	1/1:0,2:1.38:3.53	0/0:0,0:0.00:3.53	0/0:0,0:0.00:3.53	0/0:0,0:0.00:3.53	0/0:0,0:0.00:3.53	0/0:0,0:0.00:3.53	0/0:0,0:0.00:3.53	1/1:0,1:0.70:3.53	0/0:0,0:0.00:3.53	0/0:0,0:0.00:3.53	0/0:0,0:0.00:3.53	0/0:0,0:0.00:3.53	0/0:1,0:0.69:3.53	1/1:0,1:0.70:3.53	0/0:0,0:0.00:3.53	0/0:0,0:0.00:3.53	0/0:0,0:0.00:3.53	0/0:0,0:0.00:3.53	0/0:0,0:0.00:3.53	0/0:0,0:0.00:3.53	1/1:0,1:0.69:3.53	1/1:0,1:0.69:3.53	0/1:1,1:3.95:3.53	0/0:0,0:0.00:3.53	0/0:0,0:0.00:3.53
1	564835	var_3395020	G	A	.	PF_FAIL_REPEAT;MISMAPPED_UNPLACEABLE	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	0/0:1,0:0.70:7.61	0/1:3,2:6.43:7.61	1/1:0,2:1.39:7.61	0/1:3,2:5.40:7.61	0/0:0,0:0.00:7.61	0/1:2,2:6.88:7.61	0/0:3,0:2.08:7.61	0/1:1,1:4.00:7.61	1/1:0,1:0.70:7.61	0/0:3,0:2.08:7.61	0/0:8,0:5.55:7.61	1/1:0,2:1.39:7.61	0/0:0,0:0.00:7.61	0/0:4,0:2.77:7.61	0/0:4,0:2.78:7.61	0/0:1,0:0.69:7.61	0/0:0,0:0.00:7.61	0/1:3,1:2.03:7.61	0/0:0,0:0.00:7.61	0/0:1,0:0.70:7.61	1/1:0,1:0.69:7.61	0/1:6,1:0.29:7.61	0/1:2,1:3.54:7.61	0/0:0,0:0.00:7.61	0/0:2,0:1.39:7.61	0/0:4,0:2.77:7.61	0/0:2,0:1.38:7.61	0/0:1,0:0.69:7.61	0/1:2,1:3.16:7.61	0/0:0,0:0.00:7.61	1/1:0,2:1.39:7.61	0/1:9,6:19.78:7.61	0/0:2,0:1.39:7.61	0/0:1,0:0.69:7.61	0/1:4,2:7.48:7.61	0/1:2,1:3.29:7.61	0/0:2,0:1.39:7.61	0/0:2,0:1.39:7.61	0/0:2,0:1.38:7.61	0/0:0,0:0.00:7.61	0/0:1,0:0.70:7.61	0/0:2,0:1.39:7.61	0/1:1,1:4.12:7.61	0/0:0,0:0.00:7.61	0/0:4,0:2.77:7.61	0/0:1,0:0.69:7.61	0/0:5,0:3.47:7.61	0/1:4,2:4.98:7.61	0/1:1,1:3.90:7.61	0/0:7,1:0.03:7.61	0/1:2,1:3.11:7.61	0/1:1,1:3.87:7.61	0/0:0,0:0.00:7.61	0/1:2,1:3.11:7.61	0/0:0,0:0.00:7.61	0/0:3,0:2.08:7.61	0/1:1,1:4.15:7.61	0/1:1,2:3.34:7.61	0/0:1,0:0.69:7.61	0/0:0,0:0.00:7.61	1/1:0,1:0.70:7.61	0/0:2,0:1.39:7.61	0/1:1,2:2.77:7.61	1/1:0,1:0.69:7.61	0/0:2,0:1.39:7.61	0/0:0,0:0.00:7.61	0/0:3,0:2.08:7.61	0/0:0,0:0.00:7.61	0/0:0,0:0.00:7.61	0/1:2,2:6.49:7.61	0/0:1,0:0.70:7.61	0/0:4,0:2.78:7.61	0/1:2,3:6.16:7.61	0/0:0,0:0.00:7.61	0/0:2,0:1.39:7.61	0/1:1,1:3.95:7.61	0/0:0,0:0.00:7.61	0/0:1,0:0.69:7.61
1	564836	var_725078	T	C	.	PF_FAIL_REPEAT	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	1/1:1087,0:681.28:187.30	1/1:1137,0:848.00:187.30	1/1:2462,0:3117.31:187.30	1/1:808,0:741.02:187.30	1/1:1896,1:2209.11:187.30	1/1:1594,0:1918.24:187.30	1/1:1439,0:1470.46:187.30	1/1:1342,2:1109.26:187.30	1/1:1456,0:1782.36:187.30	1/1:1769,0:2622.26:187.30	1/1:1666,0:1934.03:187.30	1/1:717,1:620.83:187.30	0/0:623,0:49.27:187.30	1/1:1155,0:1514.68:187.30	1/1:1577,1:1546.84:187.30	1/1:615,0:3.12:187.30	1/1:1406,0:978.96:187.30	1/1:647,0:440.29:187.30	1/1:1007,0:689.43:187.30	1/1:1760,0:1829.84:187.30	1/1:1105,0:795.85:187.30	1/1:1456,0:1661.93:187.30	1/1:2582,0:3179.72:187.30	1/1:1749,0:1677.10:187.30	1/1:4458,1:7635.56:187.30	1/1:1156,0:1384.04:187.30	1/1:959,0:750.12:187.30	1/1:1328,0:1057.68:187.30	1/1:1722,0:2096.63:187.30	1/1:1133,0:843.85:187.30	1/1:1099,0:469.37:187.30	1/1:5898,6:9220.52:187.30	1/1:1665,0:1667.46:187.30	1/1:1841,1:2253.62:187.30	1/1:2488,4:1657.35:187.30	1/1:1789,0:2013.26:187.30	1/1:937,0:849.90:187.30	1/1:806,0:586.44:187.30	1/1:2134,1:2313.62:187.30	1/1:861,0:806.85:187.30	1/1:1645,0:1528.18:187.30	1/1:660,0:511.98:187.30	1/1:1435,0:1108.83:187.30	1/1:381,0:486.35:187.30	1/1:1568,1:1665.52:187.30	1/1:1290,1:1283.32:187.30	1/1:1097,0:1003.93:187.30	1/1:1348,0:1742.71:187.30	1/1:1867,0:2330.34:187.30	1/1:1991,2:2168.02:187.30	1/1:1379,0:1428.61:187.30	1/1:1193,0:995.67:187.30	0/0:1,0:0.70:187.30	1/1:962,0:655.63:187.30	1/1:1319,0:1024.31:187.30	1/1:1529,0:1176.67:187.30	1/1:1595,0:1340.59:187.30	1/1:1275,0:941.53:187.30	1/1:717,0:491.21:187.30	1/1:891,0:415.58:187.30	1/1:1943,0:2020.99:187.30	1/1:553,0:276.06:187.30	1/1:953,0:968.55:187.30	1/1:1437,0:1494.20:187.30	1/1:1319,0:1285.46:187.30	1/1:1704,0:1362.06:187.30	1/1:1362,0:1378.91:187.30	1/1:1920,0:2064.14:187.30	1/1:1925,0:2846.63:187.30	1/1:1141,0:1216.62:187.30	1/1:1195,0:963.02:187.30	1/1:894,0:774.88:187.30	1/1:977,1:718.43:187.30	1/1:1311,0:944.03:187.30	1/1:699,0:365.56:187.30	1/1:2200,0:2999.52:187.30	1/1:1359,0:1424.71:187.30	1/1:984,0:877.06:187.30
1	564853	var_2937485	T	A	.	MAPQ,PF_FAIL_REPEAT	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	1/1:1094,0:692.67:187.56	1/1:1191,0:943.35:187.56	1/1:2548,0:3313.54:187.56	1/1:839,0:800.90:187.56	1/1:1878,0:2164.93:187.56	1/1:1614,0:1962.39:187.56	1/1:1367,1:1332.17:187.56	1/1:1347,0:1108.26:187.56	1/1:1328,0:1503.82:187.56	1/1:1633,1:2295.35:187.56	1/1:1712,1:2039.20:187.56	1/1:792,2:767.70:187.56	0/0:650,0:23.99:187.56	1/1:1065,0:1310.56:187.56	1/1:1602,0:1591.03:187.56	0/0:550,0:58.26:187.56	1/1:1463,0:1076.63:187.56	1/1:652,1:453.48:187.56	1/1:1097,0:844.60:187.56	1/1:1797,0:1905.60:187.56	1/1:1097,0:782.14:187.56	1/1:1497,0:1750.18:187.56	1/1:2581,0:3177.49:187.56	1/1:1762,0:1702.59:187.56	1/1:4645,3:8155.88:187.56	1/1:1158,0:1388.43:187.56	1/1:945,0:725.33:187.56	1/1:1303,0:1013.08:187.56	1/1:1741,1:2144.06:187.56	1/1:1137,0:850.82:187.56	1/1:1095,0:463.68:187.56	1/1:6116,9:9794.17:187.56	1/1:1684,0:1705.55:187.56	1/1:1783,1:2125.84:187.56	1/1:2349,1:1415.84:187.56	1/1:1750,0:1930.89:187.56	1/1:993,0:958.10:187.56	1/1:848,0:659.88:187.56	1/1:2186,0:2416.80:187.56	1/1:850,0:785.66:187.56	1/1:1681,0:1597.92:187.56	1/1:686,1:563.24:187.56	1/1:1393,0:1035.10:187.56	1/1:399,0:527.58:187.56	1/1:1599,0:1724.27:187.56	1/1:1220,0:1140.94:187.56	1/1:1131,0:1069.44:187.56	1/1:1287,1:1609.35:187.56	1/1:1889,0:2379.88:187.56	1/1:1942,1:2061.81:187.56	1/1:1448,0:1570.59:187.56	1/1:1235,0:1073.31:187.56	0/0:0,0:0.00:187.56	1/1:880,0:521.67:187.56	1/1:1363,0:1103.07:187.56	1/1:1566,0:1242.49:187.56	1/1:1580,0:1313.09:187.56	1/1:1260,0:915.59:187.56	1/1:754,0:554.29:187.56	1/1:812,0:303.68:187.56	1/1:1878,0:1889.63:187.56	1/1:535,0:249.49:187.56	1/1:952,0:966.54:187.56	1/1:1358,1:1340.72:187.56	1/1:1353,0:1352.93:187.56	1/1:1736,0:1419.87:187.56	1/1:1297,0:1249.87:187.56	1/1:1991,0:2212.61:187.56	1/1:1876,1:2730.99:187.56	1/1:1155,0:1245.59:187.56	1/1:1201,0:973.85:187.56	1/1:903,0:791.68:187.56	1/1:927,0:628.28:187.56	1/1:1336,1:992.64:187.56	1/1:673,0:326.59:187.56	1/1:2218,1:3047.44:187.56	1/1:1172,0:1055.71:187.56	1/1:996,1:904.78:187.56
1	564854	var_360818	T	G	.	MAPQ,PF_FAIL_REPEAT;MISMAPPED_UNPLACEABLE	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	1/1:0,2:1.39:4.61	0/0:0,0:0.00:4.61	0/0:0,0:0.00:4.61	1/1:0,1:0.69:4.61	0/0:0,0:0.00:4.61	0/0:0,0:0.00:4.61	0/0:1,0:0.70:4.61	0/0:0,0:0.00:4.61	0/0:0,0:0.00:4.61	0/0:0,0:0.00:4.61	0/0:1,0:0.69:4.61	0/1:2,2:5.97:4.61	1/1:0,1:0.70:4.61	0/0:0,0:0.00:4.61	0/0:0,0:0.00:4.61	0/0:0,0:0.00:4.61	1/1:0,1:0.69:4.61	1/1:0,1:0.69:4.61	1/1:0,1:0.69:4.61	0/0:0,0:0.00:4.61	0/0:0,0:0.00:4.61	0/0:0,0:0.00:4.61	0/0:0,0:0.00:4.61	1/1:0,1:0.69:4.61	0/0:0,0:0.00:4.61	0/0:0,0:0.00:4.61	0/0:0,0:0.00:4.61	0/0:0,0:0.00:4.61	1/1:0,1:0.69:4.61	0/0:1,0:0.69:4.61	0/0:0,0:0.00:4.61	0/1:7,13:20.49:4.61	0/0:0,0:0.00:4.61	0/0:1,0:0.69:4.61	0/1:3,1:3.39:4.61	0/0:1,0:0.69:4.61	0/0:0,0:0.00:4.61	1/1:0,1:0.69:4.61	0/0:0,0:0.00:4.61	0/0:0,0:0.00:4.61	0/0:2,0:1.39:4.61	0/1:1,1:3.33:4.61	0/1:1,1:4.12:4.61	1/1:0,1:0.70:4.61	0/0:0,0:0.00:4.61	1/1:0,1:0.69:4.61	0/0:0,0:0.00:4.61	1/1:0,1:0.70:4.61	0/0:0,0:0.00:4.61	0/0:0,0:0.00:4.61	0/0:1,0:0.70:4.61	0/0:0,0:0.00:4.61	0/0:0,0:0.00:4.61	0/0:0,0:0.00:4.61	1/1:0,1:0.70:4.61	0/0:0,0:0.00:4.61	0/0:0,0:0.00:4.61	0/0:0,0:0.00:4.61	1/1:0,1:0.69:4.61	0/0:0,0:0.00:4.61	0/0:1,0:0.70:4.61	0/0:0,0:0.00:4.61	0/0:0,0:0.00:4.61	0/0:0,0:0.00:4.61	0/0:0,0:0.00:4.61	0/1:1,1:4.26:4.61	0/0:0,0:0.00:4.61	0/0:0,0:0.00:4.61	0/0:0,0:0.00:4.61	1/1:0,1:0.69:4.61	0/0:0,0:0.00:4.61	0/0:1,0:0.69:4.61	0/0:0,0:0.00:4.61	0/0:0,0:0.00:4.61	0/0:0,0:0.00:4.61	0/0:1,0:0.70:4.61	0/0:1,0:0.70:4.61	0/0:0,0:0.00:4.61
1	564855	var_5702992	G	C	.	MAPQ,PF_FAIL_REPEAT;MISMAPPED_UNPLACEABLE	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	0/0:0,0:0.00:4.06	0/0:0,0:0.00:4.06	0/0:0,0:0.00:4.06	0/0:0,0:0.00:4.06	0/0:0,0:0.00:4.06	0/0:1,0:0.69:4.06	0/0:0,0:0.00:4.06	0/0:1,0:0.00:4.06	0/1:1,1:3.68:4.06	0/0:0,0:0.00:4.06	0/0:0,0:0.00:4.06	0/0:1,0:0.69:4.06	0/0:0,0:0.00:4.06	1/1:0,1:0.69:4.06	0/0:0,0:0.00:4.06	0/0:0,0:0.00:4.06	0/0:0,0:0.00:4.06	0/0:0,0:0.00:4.06	0/0:0,0:0.00:4.06	0/0:0,0:0.00:4.06	1/1:0,1:0.69:4.06	0/0:0,0:0.00:4.06	0/0:1,0:0.69:4.06	0/0:0,0:0.00:4.06	1/1:0,1:0.69:4.06	0/0:0,0:0.00:4.06	0/0:0,0:0.00:4.06	1/1:0,1:0.69:4.06	0/0:0,0:0.00:4.06	1/1:0,2:1.38:4.06	0/0:0,0:0.00:4.06	0/1:12,2:1.85:4.06	0/0:0,0:0.00:4.06	1/1:0,2:1.38:4.06	0/1:3,2:8.17:4.06	0/0:0,0:0.00:4.06	0/0:2,0:1.39:4.06	0/0:0,0:0.00:4.06	0/0:0,0:0.00:4.06	0/0:0,0:0.00:4.06	0/1:1,1:4.10:4.06	0/1:3,3:8.22:4.06	0/0:0,0:0.00:4.06	0/0:0,0:0.00:4.06	1/1:0,1:0.69:4.06	0/0:2,0:1.39:4.06	0/0:0,0:0.00:4.06	0/0:0,0:0.00:4.06	0/0:0,0:0.00:4.06	0/0:0,0:0.00:4.06	0/0:0,0:0.00:4.06	0/0:0,0:0.00:4.06	0/0:0,0:0.00:4.06	1/1:0,1:0.69:4.06	0/0:1,0:0.70:4.06	0/1:1,1:4.18:4.06	0/0:1,0:0.69:4.06	0/0:0,0:0.00:4.06	0/0:0,0:0.00:4.06	0/0:0,0:0.00:4.06	0/0:1,0:0.70:4.06	0/0:0,0:0.00:4.06	0/0:0,0:0.00:4.06	1/1:0,1:0.69:4.06	0/0:0,0:0.00:4.06	0/0:0,0:0.00:4.06	0/0:0,0:0.00:4.06	0/0:0,0:0.00:4.06	0/0:0,0:0.00:4.06	0/0:1,0:0.69:4.06	0/0:0,0:0.00:4.06	0/0:0,0:0.00:4.06	1/1:0,1:0.69:4.06	0/0:0,0:0.00:4.06	0/0:1,0:0.69:4.06	0/0:0,0:0.00:4.06	0/0:0,0:0.00:4.06	0/0:0,0:0.00:4.06
1	564857	var_3160403	A	G	.	MAPQ,PF_FAIL_REPEAT	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	1/1:1131,0:753.58:187.72	1/1:1181,0:925.50:187.72	1/1:2565,0:3352.67:187.72	1/1:842,0:806.75:187.72	1/1:1889,1:2194.01:187.72	1/1:1605,0:1942.50:187.72	1/1:1372,0:1336.77:187.72	1/1:1369,1:1153.87:187.72	1/1:1361,0:1574.49:187.72	1/1:1643,0:2314.37:187.72	1/1:1719,0:2049.26:187.72	1/1:803,0:780.51:187.72	0/0:656,0:18.21:187.72	1/1:1079,0:1341.83:187.72	1/1:1597,0:1581.08:187.72	0/0:546,0:61.80:187.72	1/1:1477,2:1111.38:187.72	1/1:639,0:426.94:187.72	1/1:1107,0:862.31:187.72	1/1:1827,0:1967.60:187.72	1/1:1102,2:800.60:187.72	1/1:1497,0:1750.18:187.72	1/1:2581,0:3177.49:187.72	1/1:1748,0:1675.15:187.72	1/1:4694,2:8286.37:187.72	1/1:1160,0:1392.82:187.72	1/1:923,0:686.80:187.72	1/1:1332,0:1064.86:187.72	1/1:1751,1:2166.35:187.72	1/1:1120,0:821.28:187.72	1/1:1109,1:489.22:187.72	1/1:6133,3:9812.55:187.72	1/1:1705,0:1747.89:187.72	1/1:1814,0:2188.61:187.72	1/1:2367,3:1455.21:187.72	1/1:1774,0:1981.48:187.72	1/1:1004,0:979.73:187.72	1/1:855,2:681.57:187.72	1/1:2199,0:2444.18:187.72	1/1:855,0:795.27:187.72	1/1:1704,0:1642.89:187.72	1/1:690,1:570.48:187.72	1/1:1419,0:1080.59:187.72	1/1:409,0:550.84:187.72	1/1:1656,0:1843.59:187.72	1/1:1243,0:1185.60:187.72	1/1:1167,0:1139.92:187.72	1/1:1288,0:1606.67:187.72	1/1:1921,0:2452.39:187.72	1/1:1917,0:2005.03:187.72	1/1:1464,0:1603.98:187.72	1/1:1272,0:1142.90:187.72	0/0:1,0:0.70:187.72	1/1:896,0:547.23:187.72	1/1:1367,0:1110.30:187.72	1/1:1617,0:1334.65:187.72	1/1:1590,0:1331.41:187.72	1/1:1307,1:1002.87:187.72	1/1:761,1:571.34:187.72	1/1:807,0:296.84:187.72	1/1:1893,0:1919.74:187.72	1/1:536,0:250.94:187.72	1/1:948,0:958.50:187.72	1/1:1348,0:1315.73:187.72	1/1:1349,0:1344.95:187.72	1/1:1766,0:1474.59:187.72	1/1:1289,0:1234.21:187.72	1/1:1999,0:2229.50:187.72	1/1:1896,0:2775.03:187.72	1/1:1179,0:1295.63:187.72	1/1:1191,1:961.10:187.72	1/1:918,0:819.89:187.72	1/1:919,0:614.92:187.72	1/1:1355,0:1020.30:187.72	1/1:660,0:307.47:187.72	1/1:2253,0:3125.32:187.72	1/1:1186,0:1082.36:187.72	1/1:1012,1:935.31:187.72
1	564859	var_1605571	G	T	.	MAPQ,PF_FAIL_REPEAT	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	1/1:1148,1:787.34:188.59	1/1:1186,0:934.42:188.59	1/1:2589,0:3408.12:188.59	1/1:841,1:809.58:188.59	1/1:1921,0:2257.89:188.59	1/1:1601,0:1933.67:188.59	1/1:1369,3:1344.82:188.59	1/1:1376,1:1166.73:188.59	1/1:1348,0:1546.56:188.59	1/1:1640,0:2307.16:188.59	1/1:1716,0:2042.69:188.59	1/1:806,1:791.15:188.59	0/0:653,1:15.59:188.59	1/1:1075,0:1332.87:188.59	1/1:1574,0:1535.53:188.59	0/0:549,0:59.15:188.59	1/1:1494,0:1130.69:188.59	1/1:629,0:410.39:188.59	1/1:1118,2:891.67:188.59	1/1:1840,0:1994.61:188.59	1/1:1114,0:811.33:188.59	1/1:1514,0:1787.11:188.59	1/1:2582,0:3179.72:188.59	1/1:1761,0:1700.62:188.59	1/1:4731,1:8383.71:188.59	1/1:1170,1:1419.70:188.59	1/1:933,0:704.25:188.59	1/1:1336,1:1077.46:188.59	1/1:1760,0:2181.22:188.59	1/1:1135,0:847.33:188.59	1/1:1119,0:498.02:188.59	1/1:6163,6:9904.10:188.59	1/1:1709,2:1766.13:188.59	1/1:1802,0:2162.20:188.59	1/1:2374,4:1471.24:188.59	1/1:1789,1:2018.63:188.59	1/1:1009,0:989.61:188.59	1/1:852,1:671.95:188.59	1/1:2243,0:2537.44:188.59	1/1:860,0:804.92:188.59	1/1:1695,0:1625.26:188.59	1/1:689,4:579.66:188.59	1/1:1430,2:1110.29:188.59	1/1:410,0:553.19:188.59	1/1:1638,0:1805.69:188.59	1/1:1249,1:1202.48:188.59	1/1:1183,0:1171.61:188.59	1/1:1285,0:1599.95:188.59	1/1:1928,0:2468.33:188.59	1/1:1925,0:2021.40:188.59	1/1:1469,1:1619.66:188.59	1/1:1283,0:1163.79:188.59	0/0:1,0:0.70:188.59	1/1:883,1:531.63:188.59	1/1:1374,0:1122.99:188.59	1/1:1635,0:1367.55:188.59	1/1:1594,1:1344.29:188.59	1/1:1319,1:1024.05:188.59	1/1:771,0:583.90:188.59	1/1:823,0:318.81:188.59	1/1:1881,1:1901.17:188.59	1/1:542,1:264.57:188.59	1/1:947,0:956.50:188.59	1/1:1339,0:1297.99:188.59	1/1:1354,1:1360.14:188.59	1/1:1775,0:1491.11:188.59	1/1:1284,2:1234.17:188.59	1/1:2009,1:2256.15:188.59	1/1:1901,0:2787.34:188.59	1/1:1181,0:1299.83:188.59	1/1:1202,0:975.65:188.59	1/1:910,0:804.82:188.59	1/1:912,0:603.30:188.59	1/1:1361,0:1030.82:188.59	1/1:666,1:321.30:188.59	1/1:2295,0:3225.88:188.59	1/1:1184,0:1078.55:188.59	1/1:1002,0:911.20:188.59
1	564860	var_1214358	C	G	.	MAPQ,PF_FAIL_REPEAT;MISMAPPED_UNPLACEABLE	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	0/0:0,0:0.00:1.88	0/0:0,0:0.00:1.88	1/1:0,1:0.69:1.88	0/0:1,0:0.69:1.88	1/1:0,1:0.70:1.88	0/0:0,0:0.00:1.88	0/0:0,0:0.00:1.88	0/0:0,0:0.00:1.88	1/1:0,1:0.70:1.88	1/1:0,1:0.69:1.88	1/1:0,2:1.38:1.88	0/0:0,0:0.00:1.88	0/0:0,0:0.00:1.88	0/0:0,0:0.00:1.88	1/1:0,2:1.38:1.88	0/0:0,0:0.00:1.88	1/1:0,1:0.69:1.88	1/1:0,1:0.69:1.88	0/0:0,0:0.00:1.88	0/0:1,0:0.70:1.88	0/0:0,0:0.00:1.88	0/0:0,0:0.00:1.88	1/1:0,1:0.69:1.88	0/0:0,0:0.00:1.88	1/1:0,1:0.69:1.88	0/0:0,0:0.00:1.88	0/0:1,0:0.69:1.88	0/0:0,0:0.00:1.88	0/0:0,0:0.00:1.88	0/0:0,0:0.00:1.88	1/1:0,1:0.70:1.88	1/1:1,11:2.19:1.88	0/0:1,0:0.70:1.88	1/1:0,1:0.69:1.88	0/1:2,9:4.01:1.88	0/0:0,0:0.00:1.88	0/0:0,0:0.00:1.88	0/0:0,0:0.00:1.88	0/0:0,0:0.00:1.88	0/0:0,0:0.00:1.88	1/1:0,2:1.39:1.88	1/1:0,1:0.69:1.88	0/0:0,0:0.00:1.88	0/0:0,0:0.00:1.88	0/0:0,0:0.00:1.88	0/1:1,2:3.10:1.88	0/0:0,0:0.00:1.88	0/0:2,0:1.38:1.88	0/0:0,0:0.00:1.88	0/0:0,0:0.00:1.88	0/0:0,0:0.00:1.88	0/0:0,0:0.00:1.88	0/0:0,0:0.00:1.88	1/1:0,1:0.69:1.88	1/1:0,1:0.70:1.88	1/1:0,1:0.70:1.88	1/1:0,1:0.69:1.88	0/0:1,0:0.69:1.88	1/1:0,1:0.69:1.88	0/0:0,0:0.00:1.88	1/1:0,1:0.70:1.88	1/1:0,2:1.39:1.88	0/0:0,0:0.00:1.88	0/0:0,0:0.00:1.88	0/0:0,0:0.00:1.88	0/0:0,0:0.00:1.88	0/0:3,0:2.08:1.88	0/0:0,0:0.00:1.88	1/1:0,1:0.69:1.88	0/0:0,0:0.00:1.88	0/0:0,0:0.00:1.88	0/0:0,0:0.00:1.88	1/1:0,1:0.69:1.88	0/0:0,0:0.00:1.88	0/0:0,0:0.00:1.88	0/0:0,0:0.00:1.88	1/1:0,1:0.70:1.88	0/0:0,0:0.00:1.88
1	564861	var_58917	G	C	.	MAPQ,PF_FAIL_REPEAT	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	1/1:1166,0:812.32:187.81	1/1:1186,0:934.42:187.81	1/1:2613,0:3463.78:187.81	1/1:841,0:804.80:187.81	1/1:1944,0:2308.01:187.81	1/1:1610,0:1953.54:187.81	1/1:1375,0:1330.86:187.81	1/1:1400,0:1205.75:187.81	1/1:1348,0:1546.56:187.81	1/1:1652,0:2336.06:187.81	1/1:1721,0:2053.64:187.81	1/1:807,2:797.14:187.81	1/1:680,0:5.43:187.81	1/1:1076,1:1339.86:187.81	1/1:1581,0:1549.36:187.81	0/0:551,0:59.15:187.81	1/1:1503,0:1146.50:187.81	1/1:629,0:410.39:187.81	1/1:1154,0:946.74:187.81	1/1:1855,1:2031.33:187.81	1/1:1127,0:833.84:187.81	1/1:1530,0:1822.03:187.81	1/1:2617,0:3258.00:187.81	1/1:1788,0:1753.84:187.81	1/1:4752,0:8436.24:187.81	1/1:1177,0:1430.31:187.81	1/1:945,0:725.33:187.81	1/1:1344,1:1091.87:187.81	1/1:1760,0:2181.22:187.81	1/1:1152,0:877.09:187.81	1/1:1147,0:538.73:187.81	1/1:6228,4:10064.69:187.81	1/1:1730,0:1798.64:187.81	1/1:1802,0:2162.20:187.81	1/1:2387,1:1476.89:187.81	1/1:1802,0:2040.91:187.81	1/1:1009,0:989.61:187.81	1/1:856,0:674.10:187.81	1/1:2262,0:2577.98:187.81	1/1:861,1:811.67:187.81	1/1:1721,0:1676.33:187.81	1/1:691,0:567.57:187.81	1/1:1448,0:1131.89:187.81	1/1:415,0:564.92:187.81	1/1:1651,0:1833.04:187.81	1/1:1256,0:1211.02:187.81	1/1:1186,0:1177.58:187.81	1/1:1287,0:1604.43:187.81	1/1:1945,0:2507.13:187.81	1/1:1931,0:2033.70:187.81	1/1:1487,0:1652.31:187.81	1/1:1297,0:1190.52:187.81	0/0:1,0:0.70:187.81	1/1:884,0:528.03:187.81	1/1:1390,0:1152.11:187.81	1/1:1663,0:1419.14:187.81	1/1:1604,0:1357.16:187.81	1/1:1338,0:1052.38:187.81	1/1:771,0:583.90:187.81	1/1:829,1:332.46:187.81	1/1:1883,0:1899.65:187.81	1/1:550,0:271.59:187.81	1/1:948,0:958.50:187.81	1/1:1354,0:1327.57:187.81	1/1:1368,0:1382.97:187.81	1/1:1807,0:1550.20:187.81	1/1:1298,0:1251.83:187.81	1/1:2009,0:2250.66:187.81	1/1:1903,0:2792.27:187.81	1/1:1192,0:1322.95:187.81	1/1:1214,0:997.42:187.81	1/1:913,0:810.46:187.81	1/1:912,0:603.30:187.81	1/1:1374,0:1053.68:187.81	1/1:664,0:316.26:187.81	1/1:2306,1:3257.68:187.81	1/1:1199,1:1112.43:187.81	1/1:1003,0:913.10:187.81
1	564865	var_585913	G	C	.	PF_FAIL_REPEAT;MISMAPPED_UNPLACEABLE	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	0/0:0,0:0.00:1.98	0/0:0,0:0.00:1.98	0/0:2,0:1.39:1.98	0/0:1,0:0.69:1.98	0/0:0,0:0.00:1.98	0/0:0,0:0.00:1.98	1/1:0,2:1.39:1.98	0/0:0,0:0.00:1.98	0/0:1,0:0.70:1.98	0/0:1,0:0.69:1.98	0/0:1,0:0.69:1.98	0/1:2,3:5.29:1.98	0/0:0,0:0.00:1.98	0/0:1,0:0.69:1.98	0/0:0,0:0.00:1.98	0/0:0,0:0.00:1.98	0/0:0,0:0.00:1.98	0/0:0,0:0.00:1.98	0/0:0,0:0.00:1.98	0/0:1,0:0.70:1.98	0/0:0,0:0.00:1.98	1/1:0,1:0.69:1.98	0/0:0,0:0.00:1.98	0/0:0,0:0.00:1.98	0/0:1,0:0.69:1.98	0/0:0,0:0.00:1.98	0/0:0,0:0.00:1.98	0/0:0,0:0.00:1.98	0/0:0,0:0.00:1.98	0/0:0,0:0.00:1.98	0/0:1,0:0.70:1.98	0/1:7,2:5.32:1.98	0/0:0,0:0.00:1.98	0/1:1,1:3.91:1.98	0/1:2,2:8.86:1.98	0/0:0,0:0.00:1.98	0/0:1,0:0.70:1.98	0/0:0,0:0.00:1.98	0/0:0,0:0.00:1.98	0/0:1,0:0.69:1.98	1/1:0,3:2.08:1.98	0/1:1,1:3.33:1.98	0/0:0,0:0.00:1.98	0/0:0,0:0.00:1.98	0/0:0,0:0.00:1.98	1/1:0,1:0.69:1.98	0/0:0,0:0.00:1.98	0/0:0,0:0.00:1.98	0/1:1,1:3.90:1.98	0/0:1,0:0.70:1.98	0/0:0,0:0.00:1.98	0/0:1,0:0.70:1.98	0/0:0,0:0.00:1.98	0/0:0,0:0.00:1.98	0/0:0,0:0.00:1.98	0/0:1,0:0.70:1.98	0/0:1,0:0.69:1.98	0/0:1,0:0.69:1.98	0/0:0,0:0.00:1.98	0/0:0,0:0.00:1.98	0/0:1,0:0.70:1.98	0/0:1,0:0.69:1.98	1/1:0,2:1.39:1.98	0/0:0,0:0.00:1.98	0/0:1,0:0.69:1.98	0/0:1,0:0.69:1.98	0/0:0,0:0.00:1.98	0/0:0,0:0.00:1.98	0/0:0,0:0.00:1.98	1/1:0,1:0.69:1.98	0/0:2,0:1.38:1.98	0/0:0,0:0.00:1.98	0/0:2,0:1.38:1.98	0/0:0,0:0.00:1.98	0/0:0,0:0.00:1.98	0/0:1,0:0.70:1.98	0/0:1,0:0.70:1.98	0/0:0,0:0.00:1.98
1	564866	var_5695654	G	C	.	MISMAPPED_UNPLACEABLE	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	0/0:1,0:0.70:45.05	0/0:0,0:0.00:45.05	0/0:1,0:0.69:45.05	0/0:0,0:0.00:45.05	1/1:0,1:0.70:45.05	0/0:0,0:0.00:45.05	0/0:0,0:0.00:45.05	1/1:0,1:0.70:45.05	0/0:0,0:0.00:45.05	0/0:2,0:1.38:45.05	0/0:0,0:0.00:45.05	0/1:2,1:2.64:45.05	0/0:0,0:0.00:45.05	0/1:1,1:3.36:45.05	0/0:0,0:0.00:45.05	0/0:0,0:0.00:45.05	1/1:0,1:0.69:45.05	0/0:0,0:0.00:45.05	0/0:0,0:0.00:45.05	0/0:0,0:0.00:45.05	0/0:1,0:0.69:45.05	0/0:0,0:0.00:45.05	1/1:0,1:0.69:45.05	0/0:0,0:0.00:45.05	0/0:2,0:1.39:45.05	0/0:0,0:0.00:45.05	1/1:0,1:0.69:45.05	0/0:0,0:0.00:45.05	0/0:0,0:0.00:45.05	0/0:0,0:0.00:45.05	0/0:0,0:0.00:45.05	0/1:8,3:8.96:45.05	0/0:0,0:0.00:45.05	0/0:1,0:0.69:45.05	0/1:1,2:4.08:45.05	0/0:0,0:0.00:45.05	0/0:0,0:0.00:45.05	0/0:0,0:0.00:45.05	0/0:1,0:0.69:45.05	1/1:0,1:0.69:45.05	0/0:0,0:0.00:45.05	0/0:1,0:0.69:45.05	1/1:0,1:0.69:45.05	0/0:0,0:0.00:45.05	0/0:0,0:0.00:45.05	1/1:0,1:0.69:45.05	0/0:0,0:0.00:45.05	0/0:0,0:0.00:45.05	0/0:1,0:0.69:45.05	0/0:0,0:0.00:45.05	0/0:0,0:0.00:45.05	0/0:0,0:0.00:45.05	1/1:1374,0:1313.69:45.05	0/0:0,0:0.00:45.05	0/0:0,0:0.00:45.05	0/0:0,0:0.00:45.05	0/0:1,0:0.69:45.05	0/0:0,0:0.00:45.05	0/0:0,0:0.00:45.05	0/0:0,0:0.00:45.05	0/1:2,1:3.45:45.05	0/0:1,0:0.69:45.05	1/1:0,1:0.70:45.05	0/0:1,0:0.69:45.05	0/0:0,0:0.00:45.05	0/0:0,0:0.00:45.05	0/0:0,0:0.00:45.05	1/1:0,1:0.70:45.05	0/0:0,0:0.00:45.05	0/0:0,0:0.00:45.05	0/0:0,0:0.00:45.05	0/0:0,0:0.00:45.05	0/0:0,0:0.00:45.05	0/0:1,0:0.69:45.05	0/0:0,0:0.00:45.05	0/0:0,0:0.00:45.05	0/0:0,0:0.00:45.05	0/0:0,0:0.00:45.05
1	564870	var_3798565	G	A	.	PF_FAIL_REPEAT;MISMAPPED_UNPLACEABLE	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	0/0:0,0:0.00:3.42	1/1:0,1:0.70:3.42	0/1:1,2:3.47:3.42	1/1:0,2:1.39:3.42	1/1:0,1:0.70:3.42	0/0:0,0:0.00:3.42	0/0:0,0:0.00:3.42	1/1:0,1:0.70:3.42	0/0:0,0:0.00:3.42	0/0:0,0:0.00:3.42	1/1:0,2:1.38:3.42	0/1:3,1:1.95:3.42	0/0:0,0:0.00:3.42	0/0:0,0:0.00:3.42	1/1:0,1:0.69:3.42	0/0:0,0:0.00:3.42	0/0:0,0:0.00:3.42	0/0:0,0:0.00:3.42	0/0:1,0:0.69:3.42	0/0:1,0:0.70:3.42	0/0:0,0:0.00:3.42	0/0:1,0:0.69:3.42	0/0:0,0:0.00:3.42	0/0:0,0:0.00:3.42	0/0:0,0:0.00:3.42	0/0:0,0:0.00:3.42	1/1:0,1:0.69:3.42	0/0:0,0:0.00:3.42	1/1:0,1:0.69:3.42	0/0:1,0:0.69:3.42	0/0:0,0:0.00:3.42	0/1:8,7:23.95:3.42	0/0:0,0:0.00:3.42	1/1:0,2:1.38:3.42	0/1:9,13:27.42:3.42	0/0:0,0:0.00:3.42	0/0:0,0:0.00:3.42	0/0:0,0:0.00:3.42	0/0:1,0:0.69:3.42	1/1:0,2:1.38:3.42	1/1:0,1:0.70:3.42	0/1:2,2:5.98:3.42	1/1:0,1:0.69:3.42	0/0:0,0:0.00:3.42	0/0:0,0:0.00:3.42	0/1:1,1:3.79:3.42	0/0:0,0:0.00:3.42	0/0:0,0:0.00:3.42	0/0:1,0:0.69:3.42	1/1:0,1:0.70:3.42	0/0:0,0:0.00:3.42	0/0:0,0:0.00:3.42	1/1:0,1:0.70:3.42	0/0:0,0:0.00:3.42	1/1:0,1:0.70:3.42	1/1:0,3:2.08:3.42	0/0:0,0:0.00:3.42	0/0:0,0:0.00:3.42	0/0:0,0:0.00:3.42	0/0:1,0:0.69:3.42	0/0:0,0:0.00:3.42	0/0:1,0:0.69:3.42	1/1:0,2:1.39:3.42	0/0:1,0:0.69:3.42	0/0:0,0:0.00:3.42	0/1:1,2:3.57:3.42	0/0:0,0:0.00:3.42	0/1:1,1:4.10:3.42	0/0:0,0:0.00:3.42	1/1:0,2:1.39:3.42	0/0:0,0:0.00:3.42	0/0:0,0:0.00:3.42	0/0:0,0:0.00:3.42	0/0:0,0:0.00:3.42	1/1:0,2:1.39:3.42	0/0:1,0:0.70:3.42	0/0:0,0:0.00:3.42	0/0:0,0:0.00:3.42
1	564874	var_5023261	T	G	.	MAPQ,PF_FAIL_REPEAT	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	1/1:1048,0:618.69:187.41	1/1:1164,1:900.66:187.41	1/1:2455,1:3107.02:187.41	1/1:814,0:752.52:187.41	1/1:1848,0:2100.66:187.41	1/1:1596,0:1922.65:187.41	1/1:1449,0:1490.69:187.41	1/1:1340,0:1095.55:187.41	1/1:1371,1:1601.14:187.41	1/1:1740,1:2555.58:187.41	1/1:1671,2:1954.65:187.41	1/1:767,1:715.24:187.41	0/0:635,2:27.82:187.41	1/1:1117,1:1432.35:187.41	1/1:1551,0:1490.32:187.41	0/0:561,0:48.40:187.41	1/1:1418,0:999.34:187.41	1/1:637,1:428.42:187.41	1/1:1034,0:735.17:187.41	1/1:1762,0:1833.91:187.41	1/1:1077,0:748.15:187.41	1/1:1443,0:1634.18:187.41	1/1:2588,0:3193.10:187.41	1/1:1713,1:1612.56:187.41	1/1:4554,0:7891.10:187.41	1/1:1155,0:1381.85:187.41	1/1:952,0:737.70:187.41	1/1:1318,1:1045.19:187.41	1/1:1728,1:2115.17:187.41	1/1:1124,0:828.21:187.41	1/1:1072,0:431.27:187.41	1/1:5997,1:9450.49:187.41	1/1:1660,0:1657.47:187.41	1/1:1833,1:2235.90:187.41	1/1:2342,2:1410.13:187.41	1/1:1766,0:1964.58:187.41	1/1:940,0:855.61:187.41	1/1:804,0:582.99:187.41	1/1:2129,1:2303.23:187.41	1/1:836,0:758.90:187.41	1/1:1662,0:1561.02:187.41	1/1:663,0:517.30:187.41	1/1:1423,0:1087.63:187.41	1/1:384,0:493.16:187.41	1/1:1553,2:1639.35:187.41	1/1:1247,1:1198.57:187.41	1/1:1105,0:1019.24:187.41	1/1:1300,0:1633.66:187.41	1/1:1880,0:2359.58:187.41	1/1:1930,0:2031.65:187.41	1/1:1390,3:1464.82:187.41	1/1:1216,0:1038.01:187.41	1/1:0,0:0.00:187.41	1/1:939,0:617.33:187.41	1/1:1304,0:997.80:187.41	1/1:1526,0:1171.38:187.41	1/1:1583,0:1318.58:187.41	1/1:1245,2:899.96:187.41	1/1:731,0:514.85:187.41	1/1:829,1:332.46:187.41	1/1:1902,0:1937.87:187.41	1/1:538,0:253.87:187.41	1/1:963,0:988.73:187.41	1/1:1386,0:1391.23:187.41	1/1:1345,0:1336.98:187.41	1/1:1702,0:1358.47:187.41	1/1:1370,3:1408.84:187.41	1/1:1941,0:2107.79:187.41	1/1:1938,1:2883.95:187.41	1/1:1145,1:1229.86:187.41	1/1:1179,0:934.28:187.41	1/1:877,3:756.39:187.41	1/1:963,0:689.21:187.41	1/1:1317,0:954.34:187.41	1/1:654,0:298.75:187.41	1/1:2192,0:2980.64:187.41	1/1:1256,0:1218.04:187.41	1/1:985,0:878.95:187.41
1	564874	var_5158106	T	C	.	PF_FAIL_REPEAT	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	1/1:1292,0:1032.23:192.09	1/1:1295,0:1133.79:192.09	1/1:2829,0:3974.44:192.09	1/1:878,0:877.84:192.09	1/1:2159,1:2794.66:192.09	1/1:1630,1:2003.06:192.09	1/1:1388,1:1373.66:192.09	1/1:1497,0:1389.29:192.09	1/1:1435,2:1745.29:192.09	1/1:1773,0:2632.18:192.09	1/1:1771,1:2169.16:192.09	1/1:873,0:921.19:192.09	1/1:759,0:89.04:192.09	1/1:1087,0:1359.78:192.09	1/1:1628,0:1642.99:192.09	1/1:647,0:35.91:192.09	1/1:1619,1:1360.59:192.09	1/1:640,0:428.61:192.09	1/1:1260,1:1149.30:192.09	1/1:2004,0:2343.12:192.09	1/1:1269,0:1088.99:192.09	1/1:1608,0:1994.67:192.09	1/1:2736,0:3527.62:192.09	1/1:1799,0:1775.65:192.09	1/1:5042,0:9249.46:192.09	1/1:1222,0:1530.68:192.09	1/1:1034,0:886.34:192.09	1/1:1395,0:1179.51:192.09	1/1:1772,0:2208.11:192.09	1/1:1266,0:1082.96:192.09	1/1:1373,0:891.02:192.09	1/1:6452,5:10658.24:192.09	1/1:1805,0:1953.04:192.09	1/1:1910,0:2402.71:192.09	1/1:2809,2:2198.88:192.09	1/1:1990,0:2450.88:192.09	1/1:1014,0:999.50:192.09	1/1:882,0:720.85:192.09	1/1:2523,0:3150.45:192.09	1/1:923,1:933.68:192.09	1/1:1821,0:1876.34:192.09	1/1:779,0:732.76:192.09	1/1:1605,1:1424.89:192.09	1/1:430,0:600.48:192.09	1/1:1668,0:1868.96:192.09	1/1:1360,1:1424.33:192.09	1/1:1251,0:1308.64:192.09	1/1:1318,0:1674.35:192.09	1/1:2107,0:2884.16:192.09	1/1:1951,0:2074.82:192.09	1/1:1500,1:1684.97:192.09	1/1:1381,0:1354.03:192.09	1/1:1455,0:1474.24:192.09	1/1:979,1:689.49:192.09	1/1:1469,1:1303.97:192.09	1/1:1806,0:1689.79:192.09	1/1:1647,0:1437.00:192.09	1/1:1479,0:1311.04:192.09	1/1:810,0:653.21:192.09	1/1:1074,0:700.76:192.09	1/1:2033,0:2206.47:192.09	1/1:598,0:345.01:192.09	1/1:1004,0:1072.51:192.09	1/1:1566,0:1762.59:192.09	1/1:1418,0:1484.27:192.09	1/1:1985,0:1888.98:192.09	1/1:1405,0:1465.99:192.09	1/1:2089,0:2421.68:192.09	1/1:2001,0:3036.33:192.09	1/1:1255,0:1457.30:192.09	1/1:1264,0:1089.35:192.09	1/1:936,0:854.07:192.09	1/1:995,0:744.52:192.09	1/1:1507,1:1299.99:192.09	1/1:740,1:434.00:192.09	1/1:2453,0:3610.99:192.09	1/1:1379,0:1465.76:192.09	1/1:1101,0:1104.58:192.09
1	564875	var_5272098	T	C	.	PF_FAIL_REPEAT;MISMAPPED_UNPLACEABLE	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	0/0:0,0:0.00:3.71	0/0:0,0:0.00:3.71	1/1:0,1:0.69:3.71	0/0:0,0:0.00:3.71	0/0:0,0:0.00:3.71	0/0:1,0:0.69:3.71	0/0:0,0:0.00:3.71	0/0:0,0:0.00:3.71	0/0:0,0:0.00:3.71	0/0:0,0:0.00:3.71	0/0:0,0:0.00:3.71	0/1:1,2:2.64:3.71	0/0:0,0:0.00:3.71	1/1:0,1:0.69:3.71	0/0:0,0:0.00:3.71	0/0:1,0:0.69:3.71	0/0:0,0:0.00:3.71	0/0:0,0:0.00:3.71	0/0:1,0:0.69:3.71	0/0:0,0:0.00:3.71	0/0:0,0:0.00:3.71	0/0:0,0:0.00:3.71	0/0:0,0:0.00:3.71	0/0:0,0:0.00:3.71	0/0:0,0:0.00:3.71	0/0:0,0:0.00:3.71	0/0:0,0:0.00:3.71	0/0:0,0:0.00:3.71	0/0:0,0:0.00:3.71	1/1:0,1:0.69:3.71	0/0:0,0:0.00:3.71	0/1:8,5:16.82:3.71	0/0:0,0:0.00:3.71	0/0:0,0:0.00:3.71	0/1:6,3:10.47:3.71	0/0:0,0:0.00:3.71	0/0:0,0:0.00:3.71	0/0:0,0:0.00:3.71	0/0:0,0:0.00:3.71	0/0:0,0:0.00:3.71	0/1:1,1:4.10:3.71	0/0:0,0:0.00:3.71	0/0:0,0:0.00:3.71	0/0:0,0:0.00:3.71	0/0:1,0:0.69:3.71	0/0:0,0:0.00:3.71	1/1:0,1:0.69:3.71	0/0:0,0:0.00:3.71	0/0:0,0:0.00:3.71	0/0:0,0:0.00:3.71	0/0:0,0:0.00:3.71	0/1:1,1:3.87:3.71	0/0:0,0:0.00:3.71	1/1:0,2:1.38:3.71	1/1:0,1:0.70:3.71	1/1:0,1:0.70:3.71	0/0:0,0:0.00:3.71	0/0:0,0:0.00:3.71	0/0:0,0:0.00:3.71	0/0:0,0:0.00:3.71	0/0:0,0:0.00:3.71	0/0:0,0:0.00:3.71	0/0:0,0:0.00:3.71	0/0:0,0:0.00:3.71	0/0:0,0:0.00:3.71	0/0:0,0:0.00:3.71	0/0:0,0:0.00:3.71	0/0:0,0:0.00:3.71	0/0:0,0:0.00:3.71	0/0:0,0:0.00:3.71	0/0:0,0:0.00:3.71	0/0:0,0:0.00:3.71	0/0:0,0:0.00:3.71	0/0:0,0:0.00:3.71	0/0:0,0:0.00:3.71	0/0:0,0:0.00:3.71	0/0:0,0:0.00:3.71	0/0:0,0:0.00:3.71
1	564879	var_786198	G	A	.	PF_FAIL_REPEAT;MISMAPPED_UNPLACEABLE	SVLEN=0;SVTYPE=SNP	GT:COV:GT_CONF:SITE_CONF	0/0:0,0:0.00:7.65	0/0:0,0:0.00:7.65	1/1:0,2:1.39:7.65	0/0:0,0:0.00:7.65	0/0:1,0:0.70:7.65	0/0:1,0:0.69:7.65	0/0:0,0:0.00:7.65	0/0:0,0:0.00:7.65	0/1:2,1:2.98:7.65	0/0:0,0:0.00:7.65	0/0:1,0:0.69:7.65	1/1:0,2:1.39:7.65	1/1:0,1:0.70:7.65	0/0:0,0:0.00:7.65	0/0:0,0:0.00:7.65	0/0:0,0:0.00:7.65	0/0:1,0:0.69:7.65	0/0:0,0:0.00:7.65	0/0:0,0:0.00:7.65	0/1:1,1:4.05:7.65	0/1:1,1:3.91:7.65	0/0:1,0:0.69:7.65	0/0:0,0:0.00:7.65	0/0:0,0:0.00:7.65	0/1:2,2:7.91:7.65	0/0:0,0:0.00:7.65	0/0:0,0:0.00:7.65	0/0:0,0:0.00:7.65	1/1:0,1:0.69:7.65	1/1:0,1:0.69:7.65	0/0:0,0:0.00:7.65	0/1:6,12:17.69:7.65	0/0:0,0:0.00:7.65	0/0:1,0:0.69:7.65	0/1:7,12:21.45:7.65	1/1:0,1:0.69:7.65	0/0:0,0:0.00:7.65	0/0:1,0:0.69:7.65	0/0:1,0:0.69:7.65	0/0:0,0:0.00:7.65	1/1:0,1:0.70:7.65	0/1:2,4:4.59:7.65	1/1:0,1:0.69:7.65	0/0:0,0:0.00:7.65	0/0:0,0:0.00:7.65	0/0:0,0:0.00:7.65	1/1:0,2:1.38:7.65	0/0:0,0:0.00:7.65	0/1:1,1:3.90:7.65	0/0:0,0:0.00:7.65	0/0:0,0:0.00:7.65	0/0:0,0:0.00:7.65	0/0:0,0:0.00:7.65	0/0:0,0:0.00:7.65	1/1:0,1:0.70:7.65	1/1:0,1:0.70:7.65	0/0:1,0:0.69:7.65	0/0:0,0:0.00:7.65	0/0:0,0:0.00:7.65	0/0:1,0:0.69:7.65	1/1:0,1:0.70:7.65	1/1:0,1:0.69:7.65	0/0:0,0:0.00:7.65	0/0:0,0:0.00:7.65	0/1:1,1:3.82:7.65	0/0:0,0:0.00:7.65	0/0:0,0:0.00:7.65	0/0:2,0:1.39:7.65	0/0:0,0:0.00:7.65	0/0:1,0:0.69:7.65	0/0:0,0:0.00:7.65	0/0:0,0:0.00:7.65	0/0:0,0:0.00:7.65	0/1:1,2:3.38:7.65	0/0:0,0:0.00:7.65	1/1:0,1:0.70:7.65	0/0:0,0:0.00:7.65	0/0:0,0:0.00:7.65